git://source.jalview.org / jalview.git / search
? search:
summary | shortlog | log | commit | commitdiff | tree
first ⋅ prev ⋅ next
JAL-2089 update Uniprot to UniProt in help docs.
2016-09-05 Jim ProcterJAL-2089 update Uniprot to UniProt in help docs.
 commit | commitdiff | tree
2016-09-05 Jim ProcterJAL-2089 drop MCView documentation from contents.
 commit | commitdiff | tree
2016-09-05 Jim ProcterJAL-1919 revised mmCIF documentation
 commit | commitdiff | tree
2016-09-05 Jim ProcterJAL-2089 bump release date for 2.10
 commit | commitdiff | tree
2016-09-01 Jim ProcterMerge branch 'bug/JAL-2034_fix' into develop
 commit | commitdiff | tree
2016-09-01 Jim ProcterJAL-2034 - remember to reset needsOverviewUpdate at...
commit | commitdiff | tree
2016-09-01 Jim ProcterJAL-2034 check context of selection group to catch...
commit | commitdiff | tree
2016-08-31 Jim ProcterJAL-2034 fix logic so recalcConservation(true) returns...
commit | commitdiff | tree
2016-08-31 Jim ProcterJAL-2034 moved ‘isDefinedGroup’ flag to a test method...
commit | commitdiff | tree
2016-08-31 Jim ProcterJAL-2034 remove todo - answer is yes!
 commit | commitdiff | tree
2016-08-02 Jim ProcterJAL-2046 additional logic to suppress spurious implementatio...
commit | commitdiff | tree
2016-08-02 Jim ProcterMerge branch 'efficiency/JAL-2034_JAL-1421' into develop
 commit | commitdiff | tree
2016-08-02 Jim ProcterJAL-2034 show greyed out image during overview update
 commit | commitdiff | tree
2016-08-02 Jim ProcterMerge branch 'develop' into efficiency/JAL-2034_JAL...
commit | commitdiff | tree
2016-08-02 Jim ProcterJAL-2068 reinstated false return value for notifyWorking
 commit | commitdiff | tree
2016-08-02 Jim ProcterMerge branch 'develop' into efficiency/JAL-2034_JAL...
commit | commitdiff | tree
2016-08-01 Jim ProcterJAL-2164 TODO: make test pass for JMOL_PARSER
 commit | commitdiff | tree
2016-08-01 Jim ProcterJAL-2164 JAL-1919 JAL-1270 use structure import settings...
commit | commitdiff | tree
2016-08-01 Jim ProcterMerge branch 'develop' of http://source.jalview.org...
commit | commitdiff | tree
2016-08-01 Jim ProcterMerge branch 'bug/JAL-2154projectMappings' into develop
 commit | commitdiff | tree
2016-08-01 Jim ProcterMerge branch 'task/JAL-2164_mcviewforoldjalviewprojects...
commit | commitdiff | tree
2016-08-01 Jim ProcterJAL-2164 prevent jalview news from opening
 commit | commitdiff | tree
2016-08-01 Jim ProcterJAL-2164 clear the desktop before testStoreAndRecoverExpande...
commit | commitdiff | tree
2016-08-01 Jim ProcterMerge branch 'task/JAL-2164_mcviewforoldjalviewprojects...
commit | commitdiff | tree
2016-08-01 Jim ProcterJAL-1772 make sure we actually return reference to...
commit | commitdiff | tree
2016-07-29 Jim ProcterJAL-1772 JAL-2164 make expanded view save/restore test...
commit | commitdiff | tree
2016-07-29 Jim ProcterJAL-2164 JAL-1772 explodeViews can be static, so make...
commit | commitdiff | tree
2016-07-29 Jim ProcterJAL-2164 revert tests depending on import of legacy...
commit | commitdiff | tree
2016-07-29 Jim ProcterJAL-2154 disable visual delay only after completed...
commit | commitdiff | tree
2016-07-29 Jim ProcterJAL-2154 register any new dataset codon frames only...
commit | commitdiff | tree
2016-07-29 Jim ProcterJAL-2154 only include mappings in dbref/alcodon in...
commit | commitdiff | tree
2016-07-27 Jim ProcterJAL-2154 toString for forward references
 commit | commitdiff | tree
2016-07-27 Jim ProcterMerge branch 'patch/JAL-2156_JAL-2163_saveSplitFrameFromSave...
commit | commitdiff | tree
2016-07-27 Jim ProcterJAL-2163 set title for the alignframe from restored...
commit | commitdiff | tree
2016-07-27 Jim ProcterJAL-2156 resolve and add complementary views for saveAlignment
 commit | commitdiff | tree
2016-07-27 Jim ProcterJAL-2156 refactor saveState & saveAlignment to common...
commit | commitdiff | tree
2016-07-27 Jim ProcterJAL-2156 getter for AlignFrame(s) held in a splitframe
 commit | commitdiff | tree
2016-07-26 Jim ProcterJAL-2157 todo: verify parser/file format enums and...
commit | commitdiff | tree
2016-07-24 Jim ProcterJAL-2154 formatting
 commit | commitdiff | tree
2016-07-24 Jim ProcterJAL-2154 keep track of incomplete sequences and report...
commit | commitdiff | tree
2016-07-24 Jim ProcterJAL-2154 systematic pattern for defining/resolving...
commit | commitdiff | tree
2016-07-23 Jim ProcterJAL-2154 patch the hack (Jalview2XML tests pass)
 commit | commitdiff | tree
2016-07-21 Jim ProcterMerge branch 'apifix/JAL-1926_JAL-2106' into develop
 commit | commitdiff | tree
2016-07-20 Jim ProcterJAL-1926 JAL-2106 fix name for flag controlling addition...
commit | commitdiff | tree
2016-07-20 Jim ProcterJAL-1926 JAL-2106 don’t use PDB database constant as...
commit | commitdiff | tree
2016-07-20 Jim ProcterJAL-1926 JAL-2106 use enum for ‘DEFAULT_STRUCTURE_FORMAT...
commit | commitdiff | tree
2016-07-20 Jim ProcterJAL-1926 JAL-2106 remove startRes/endRes fields - not...
commit | commitdiff | tree
2016-07-19 Jim ProcterMerge branch 'develop' into efficiency/JAL-2034_JAL...
commit | commitdiff | tree
2016-07-18 Jim ProcterMerge branch 'develop' of http://source.jalview.org...
commit | commitdiff | tree
2016-07-18 Jim ProcterJAL-666 patch JAL-1947 in applet where overview is...
commit | commitdiff | tree
2016-07-18 Jim ProcterJAL-2068 clearer instructions on how to use script...
commit | commitdiff | tree
2016-07-18 Jim ProcterJAL-2068 clarify comments
 commit | commitdiff | tree
2016-07-18 Jim ProcterJAL-2068 scale annotation display character to width...
commit | commitdiff | tree
2016-07-18 Jim ProcterJAL-2121 cleanup TODO
 commit | commitdiff | tree
2016-07-18 Jim ProcterJAL-2110 JAL-2145 fix out of date test for 2baee069f9edaef28...
commit | commitdiff | tree
2016-07-18 Jim ProcterMerge branch 'features/JAL-2068groovyAnnotationWorker...
commit | commitdiff | tree
2016-07-18 Jim ProcterJAL-2145 improvement: ensure conservation calculation...
commit | commitdiff | tree
2016-07-18 Jim ProcterJAL-2145 documentation of getWidth()
 commit | commitdiff | tree
2016-07-18 Jim ProcterJAL-2145 JAL-1551 formatting
 commit | commitdiff | tree
2016-07-18 Jim ProcterJAL-2145 fix: build alignments before building AlignFrame...
commit | commitdiff | tree
2016-07-14 Jim Procterfix for JAL-2147
 commit | commitdiff | tree
2016-07-14 Jim ProcterJAL-2147 findMappingsBetweenSequenceAndOthers for scoping...
commit | commitdiff | tree
2016-07-14 Jim ProcterJAL-1115 change implementation to avoid possibility...
commit | commitdiff | tree
2016-07-14 Jim ProcterJAL-1270 test coverage TODO Alignment.append(AlignmentI)
 commit | commitdiff | tree
2016-07-14 Jim ProcterJAL-2110 JAL-2147 JAL-2145 - pad CDS alignment reconstructed...
commit | commitdiff | tree
2016-07-13 Jim ProcterMerge branch 'features/JAL-2110_crossRefDuplications...
commit | commitdiff | tree
2016-07-13 Jim ProcterMerge branch 'develop' into features/JAL-2110_crossRefDuplic...
commit | commitdiff | tree
2016-07-12 Jim ProcterJAL-2144 TODO - new methods for canonicalisation and...
commit | commitdiff | tree
2016-07-12 Jim ProcterJAL-2110 avoid potential race condition where user...
commit | commitdiff | tree
2016-07-12 Jim ProcterJAL-2110 TODO for JAL-2131
 commit | commitdiff | tree
2016-07-12 Jim ProcterJAL-2110 note about use case for when alignAsSameSequences...
commit | commitdiff | tree
2016-07-12 Jim ProcterJAL-2110 test demonstrating limitation of current implementa...
commit | commitdiff | tree
2016-07-12 Jim ProcterJAL-2110 javadoc and TODO re shortcomings of implementation
 commit | commitdiff | tree
2016-07-12 Jim ProcterJAL-2110 javadoc
 commit | commitdiff | tree
2016-07-12 Jim ProcterJAL-2110 scalability todo
 commit | commitdiff | tree
2016-07-12 Jim ProcterJAL-1381 JAL-2110 efficiency TODO
 commit | commitdiff | tree
2016-07-12 Jim ProcterMerge branch 'develop' of http://source.jalview.org...
commit | commitdiff | tree
2016-07-12 Jim ProcterJAL-1369 release notes for patch of save/restore representat...
commit | commitdiff | tree
2016-06-23 Jim ProcterMerge branch 'develop' into merge_JAL-2110
 commit | commitdiff | tree
2016-06-23 Jim ProcterJAL-1270 test group fix
 commit | commitdiff | tree
2016-06-23 Jim ProcterJAL-2110 make indirect xref searches work by not filtering...
commit | commitdiff | tree
2016-06-23 Jim ProcterJAL-2110 warning message when routine finds non-ds...
commit | commitdiff | tree
2016-06-23 Jim ProcterJAL-2110 clarify javadoc
 commit | commitdiff | tree
2016-06-23 Jim ProcterJAL-2110 refactor to split SequenceFetcher from x-ref...
commit | commitdiff | tree
2016-06-23 Jim ProcterJAL-2110 JAL-1551 formatting
 commit | commitdiff | tree
2016-06-23 Jim ProcterJAL-2110 enable and fix failing tests
 commit | commitdiff | tree
2016-06-23 Jim ProcterJAL-2110 enable and fix test
 commit | commitdiff | tree
2016-06-23 Jim ProcterJAL-2110 refactor sequenceFetcherTest to allow verifying...
commit | commitdiff | tree
2016-06-23 Jim ProcterJAL-2110 use SequenceI.isProtein()
 commit | commitdiff | tree
2016-06-23 Jim ProcterJAL-2110 SequenceI.isProtein method
 commit | commitdiff | tree
2016-06-22 Jim ProcterJAL-2110 remove hardwired detection of search context...
commit | commitdiff | tree
2016-06-21 Jim ProcterMerge branch 'features/JAL-2110_crossRefDuplications...
commit | commitdiff | tree
2016-06-21 Jim ProcterMerge branch 'develop' of http://source.jalview.org...
commit | commitdiff | tree
2016-06-21 Jim ProcterMerge branch 'features/JAL-1956_featureStyles' into...
commit | commitdiff | tree
2016-06-21 Jim ProcterJAL-1270 ensure before/after clauses have at least...
commit | commitdiff | tree
2016-06-21 Jim ProcterJAL-2089 cleared out old ‘What’s new’
 commit | commitdiff | tree
2016-06-21 Jim ProcterJAL-192 JAL-1369 release notes
 commit | commitdiff | tree
2016-06-21 Jim ProcterMerge branch 'features/JAL-1369_refseqproject' into...
commit | commitdiff | tree
2016-06-21 Jim ProcterJAL-1369 make sure desktop is cleared before test starts
 commit | commitdiff | tree
2016-06-21 Jim ProcterJAL-1369 jalview2xml tests need to be run sequentially
 commit | commitdiff | tree
next