| 2017-10-31 |
gmungoc | Merge branch 'bug/JAL-2791selectVisibleFeatures' into
|
commit | commitdiff | tree |
| 2017-10-31 |
gmungoc | Merge branch 'develop' into features/JAL-1793VCF
|
commit | commitdiff | tree |
| 2017-10-31 |
gmungoc | JAL-2791 select columns by _visible_ features
|
commit | commitdiff | tree |
| 2017-10-31 |
gmungoc | JAL-2808 revised util.matcher package, 2 filter conditions...
|
commit | commitdiff | tree |
| 2017-10-31 |
gmungoc | JAL-2792 test updated for 3 column table
|
commit | commitdiff | tree |
| 2017-10-31 |
gmungoc | JAL-2808 reduce code with WindowAdapter
|
commit | commitdiff | tree |
| 2017-10-30 |
gmungoc | JAL-2791 check feature visibility when selecting columns
|
commit | commitdiff | tree |
| 2017-10-30 |
gmungoc | JAL-2808 add attribute filter options to graduate colour...
|
commit | commitdiff | tree |
| 2017-10-30 |
gmungoc | JAL-2792 Javadoc updates
|
commit | commitdiff | tree |
| 2017-10-30 |
gmungoc | JAL-2808 add attribute filter(s) to FeatureColour
|
commit | commitdiff | tree |
| 2017-10-30 |
gmungoc | JAL-2808 remember attribute keys by feature type
|
commit | commitdiff | tree |
| 2017-10-30 |
gmungoc | JAL-2808 classes to support filtering by attribute...
|
commit | commitdiff | tree |
| 2017-10-27 |
gmungoc | JAL-2526 updated javadoc
|
commit | commitdiff | tree |
| 2017-10-27 |
gmungoc | JAL-2754 renamed proguard.jar to include version number
|
commit | commitdiff | tree |
| 2017-10-27 |
gmungoc | JAL-2754 updated proguard.jar to 5.3.3
|
commit | commitdiff | tree |
| 2017-10-27 |
gmungoc | JAL-2792 include source in copy constructor; null pointer...
|
commit | commitdiff | tree |
| 2017-10-27 |
gmungoc | JAL-2754 update to specify Java 1.8(+)
|
commit | commitdiff | tree |
| 2017-10-27 |
gmungoc | Merge branch 'develop' into features/JAL-1793VCF
|
commit | commitdiff | tree |
| 2017-10-27 |
gmungoc | JAL-2792 capture feature metadata and render in Feature...
|
commit | commitdiff | tree |
| 2017-10-26 |
gmungoc | Merge branch 'develop' into features/JAL-1793VCF
|
commit | commitdiff | tree |
| 2017-10-26 |
gmungoc | JAL-2792 html table for Feature Details report
|
commit | commitdiff | tree |
| 2017-10-25 |
gmungoc | JAL-2743 fall back to parsing description if chromosome...
|
commit | commitdiff | tree |
| 2017-10-24 |
gmungoc | JAL-2743 slightly fancier species/assembly matching...
|
commit | commitdiff | tree |
| 2017-10-24 |
gmungoc | JAL-2738 tidy Javadoc, remove debug logging
|
commit | commitdiff | tree |
| 2017-10-24 |
gmungoc | JAL-2743 look up species and gene loci for Ensembl...
|
commit | commitdiff | tree |
| 2017-10-24 |
gmungoc | JAL-1739 Javadoc updated for Lambda expression parser...
|
commit | commitdiff | tree |
| 2017-10-24 |
gmungoc | Merge branch 'develop' into features/JAL-1793VCF; lambda...
|
commit | commitdiff | tree |
| 2017-10-24 |
gmungoc | JAL-2788 corrected merge error in propertyChange
|
commit | commitdiff | tree |
| 2017-10-24 |
gmungoc | JAL-2787 set start/end seq explicitly for test
|
commit | commitdiff | tree |
| 2017-10-23 |
gmungoc | JAL-2776 repaint everything on toggle group colour
|
commit | commitdiff | tree |
| 2017-10-23 |
gmungoc | JAL-1854 keep fallthrough but with comment to suppress...
|
commit | commitdiff | tree |
| 2017-10-23 |
gmungoc | JAL-1854 remove fallthrough of switch case (Checkstyle...
|
commit | commitdiff | tree |
| 2017-10-23 |
gmungoc | JAL-2737 JAL-1854 corrected package suppressions, updated...
|
commit | commitdiff | tree |
| 2017-10-20 |
gmungoc | JAL-2253 pull up constant, additional unit test
|
commit | commitdiff | tree |
| 2017-10-20 |
gmungoc | JAL-2755 update caller for method rename!
|
commit | commitdiff | tree |
| 2017-10-20 |
gmungoc | JAL-2609 fully erase scale above, tidy code change
|
commit | commitdiff | tree |
| 2017-10-19 |
gmungoc | JAL-2609 adjustments for test findings
|
commit | commitdiff | tree |
| 2017-10-19 |
gmungoc | JAL-2755 find gene loci for fetched xrefs where possible
|
commit | commitdiff | tree |
| 2017-10-19 |
gmungoc | JAL-2755 put chromosomal dbref first in report
|
commit | commitdiff | tree |
| 2017-10-19 |
gmungoc | JAL-2755 add lookup of cds/cdna gene loci
|
commit | commitdiff | tree |
| 2017-10-19 |
gmungoc | JAL-2755 add species lookup
|
commit | commitdiff | tree |
| 2017-10-19 |
gmungoc | JAL-2755 add missing Javadoc
|
commit | commitdiff | tree |
| 2017-10-19 |
gmungoc | JAL-2755 rename EnsemblInfo as EnsemblData, add 'true...
|
commit | commitdiff | tree |
| 2017-10-11 |
gmungoc | JAL-2609 tests updated for revised label width
|
commit | commitdiff | tree |
| 2017-10-11 |
gmungoc | JAL-2772 check array bounds for sequence access
|
commit | commitdiff | tree |
| 2017-10-11 |
gmungoc | JAL-2609 tidy label width code, some checkstyle warnings
|
commit | commitdiff | tree |
| 2017-10-11 |
gmungoc | Merge branch 'bug/JAL-2742' into develop
|
commit | commitdiff | tree |
| 2017-10-11 |
gmungoc | JAL-2742 set HiddenColumns null for no hidden coluns...
|
commit | commitdiff | tree |
| 2017-10-11 |
gmungoc | Merge branch 'bug/JAL-2757_uniprotftsbadquery' into...
|
commit | commitdiff | tree |
| 2017-10-11 |
gmungoc | JAL-2757 fix PDB also; suppress stack trace and compiler...
|
commit | commitdiff | tree |
| 2017-10-11 |
gmungoc | JAL-2738 javadoc correction
|
commit | commitdiff | tree |
| 2017-10-10 |
gmungoc | Merge branch 'develop' into features/JAL-1793VCF
|
commit | commitdiff | tree |
| 2017-10-09 |
gmungoc | JAL-2480 use interface type for sequenceFeatureStore
|
commit | commitdiff | tree |
| 2017-10-09 |
gmungoc | JAL-2523 basic sleep and retry (3 times) on 429 response...
|
commit | commitdiff | tree |
| 2017-10-09 |
gmungoc | JAL-2523 convenience method to get model organisms
|
commit | commitdiff | tree |
| 2017-10-09 |
gmungoc | JAL-2738 ensure variant feature is in forward sense
|
commit | commitdiff | tree |
| 2017-10-09 |
gmungoc | JAL-2738 assertion for derived protein variant added
|
commit | commitdiff | tree |
| 2017-10-09 |
gmungoc | JAL-2738 remove commented code, unit test coverage
|
commit | commitdiff | tree |
| 2017-10-06 |
gmungoc | JAL-2753 add new jar to lib folder!
|
commit | commitdiff | tree |
| 2017-10-06 |
gmungoc | JAL-2753 update to htsjdk 2.12.0 (requires Java 8)
|
commit | commitdiff | tree |
| 2017-10-06 |
gmungoc | JAL-2754 update to Java 1.8
|
commit | commitdiff | tree |
| 2017-10-06 |
gmungoc | JAL-2738 unit test for mapping failure case
|
commit | commitdiff | tree |
| 2017-10-05 |
gmungoc | JAL-2738 warn (in console) when non chromosomal coordinates...
|
commit | commitdiff | tree |
| 2017-10-05 |
gmungoc | JAL-2738 helper method for convolving mappings
|
commit | commitdiff | tree |
| 2017-10-05 |
gmungoc | JAL-2755 transfer chromosomal reference from transcript...
|
commit | commitdiff | tree |
| 2017-10-05 |
gmungoc | JAL-2738 method to compound / traverse / convolve two...
|
commit | commitdiff | tree |
| 2017-10-05 |
gmungoc | JAL-2744 add score to feature details report, description...
|
commit | commitdiff | tree |
| 2017-10-04 |
gmungoc | JAL-2738 fix bug of premature exit from adding attributes
|
commit | commitdiff | tree |
| 2017-10-04 |
gmungoc | JAL-2523 start of refactoring...
|
commit | commitdiff | tree |
| 2017-10-04 |
gmungoc | JAL-2738 match consequence "Allele" to VCF allele;...
|
commit | commitdiff | tree |
| 2017-10-04 |
gmungoc | JAL-2744 handle null features list
|
commit | commitdiff | tree |
| 2017-10-03 |
gmungoc | JAL-2738 update test for threaded VCFLoader
|
commit | commitdiff | tree |
| 2017-10-03 |
gmungoc | JAL-2738 code formatting
|
commit | commitdiff | tree |
| 2017-10-02 |
gmungoc | JAL-2738 code tidy up, null checks &c
|
commit | commitdiff | tree |
| 2017-10-02 |
gmungoc | Merge branch 'develop' into features/JAL-1793VCF
|
commit | commitdiff | tree |
| 2017-10-02 |
gmungoc | JAL-2525 lookup transcript features by Ontology
|
commit | commitdiff | tree |
| 2017-10-02 |
gmungoc | JAL-2738 filter VEP consequence data to that for current...
|
commit | commitdiff | tree |
| 2017-09-29 |
gmungoc | JAL-2738 one sequence feature per (SNP) VCF allele
|
commit | commitdiff | tree |
| 2017-09-29 |
gmungoc | JAL-2744 indent CSQ lines to catch the eye
|
commit | commitdiff | tree |
| 2017-09-28 |
gmungoc | JAL-2745 update www.ebi.ac.uk to https
|
commit | commitdiff | tree |
| 2017-09-28 |
gmungoc | JAL-2738 separate thread to load VCF; update FeatureSettings...
|
commit | commitdiff | tree |
| 2017-09-28 |
gmungoc | Merge branch 'develop' into features/JAL-1793VCF
|
commit | commitdiff | tree |
| 2017-09-28 |
gmungoc | JAL-2036 set menus after fully loading AlignFrame
|
commit | commitdiff | tree |
| 2017-09-28 |
gmungoc | JAL-1796 GeneLociI as distinguished DBRefEntry
|
commit | commitdiff | tree |
| 2017-09-28 |
gmungoc | JAL-2744 simple Feature Details report from Popup menu
|
commit | commitdiff | tree |
| 2017-09-28 |
gmungoc | JAL-2744 refactor PopupMenu constructor to enable adding...
|
commit | commitdiff | tree |
| 2017-09-26 |
gmungoc | JAL-2738 transfer VCF variant features to CDS sequences
|
commit | commitdiff | tree |
| 2017-09-26 |
gmungoc | JAL-2738 JAL-2154 add DBRef from transcript to synthesized...
|
commit | commitdiff | tree |
| 2017-09-26 |
gmungoc | JAL-2738 unit test for reverse strand gene
|
commit | commitdiff | tree |
| 2017-09-26 |
gmungoc | JAL-2738 promote setGeneLoci to SequenceI!
|
commit | commitdiff | tree |
| 2017-09-25 |
gmungoc | JAL-2738 use complement base for a VCF variant on reverse...
|
commit | commitdiff | tree |
| 2017-09-25 |
gmungoc | JAL-2738 getGeneLoci promoted to SequenceI
|
commit | commitdiff | tree |
| 2017-09-25 |
gmungoc | Merge branch 'develop' into features/JAL-1793VCF
|
commit | commitdiff | tree |
| 2017-09-25 |
gmungoc | JAL-2525 return no features if none matches ontology...
|
commit | commitdiff | tree |
| 2017-09-25 |
gmungoc | JAL-2738 query unindexed file, unit test for VCFLoader
|
commit | commitdiff | tree |
| 2017-09-25 |
gmungoc | JAL-2738 one constant in codebase for "alleles" attribute of
|
commit | commitdiff | tree |
| 2017-09-25 |
gmungoc | JAL-2738 extract SNP variants from SNP or MIXED variant...
|
commit | commitdiff | tree |
| 2017-09-22 |
gmungoc | JAL-2738 extract utility method to MappingUtils
|
commit | commitdiff | tree |
| 2017-09-22 |
gmungoc | JAL-2738 correct handling of reverse strand genes
|
commit | commitdiff | tree |
| 2017-09-22 |
gmungoc | JAL-2738 lookup GRCh38/37 gene mapping
|
commit | commitdiff | tree |
| next |
git://source.jalview.org / jalview.git / search