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2006-07-12	amwaterhouse	sequences are private in SequenceGroup	commit \| commitdiff \| tree
2006-07-12	amwaterhouse	Append start and end	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	Dont discard label if different to H or E	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	Redundant Remove Redundancy Removed	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	Sequence numbering maintained	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	Changeable background colour	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	Make sure bond has a colour	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	Make sure atom has a colour	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	Highlight sequences before seleting	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	Corrected for hidden rows	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	Row might have height of zero	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	check control down if c pressed in cursor mode	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	changeColour is public	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	Coms might be null	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	New panel layouts	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	Offsets	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	Optimised PID method	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	Make 1.1 compatible	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	Move position of stopLoading for 1.5 people	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	make 1.1 compatible	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	Dont write graph type twice	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	Checks on drawing characters and if sequence ref has...	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	Colour argument added, to mirror applet view	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	Prepare for launchFullApplication	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	Highlight sequences to be deleted before deleting,...	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	Check row.annotations is not null	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	SelectionGroup is initially null	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	Replaced by AnnotationFile	commit \| commitdiff \| tree
2006-06-23	amwaterhouse	Uniprot may have several accession ids	commit \| commitdiff \| tree
2006-06-23	amwaterhouse	Parse HTML links from jalview features file	commit \| commitdiff \| tree
2006-06-23	amwaterhouse	DBRefFetcher replaces SequenceFeatureFetcher	commit \| commitdiff \| tree
2006-06-23	amwaterhouse	Check if featuresDisplayed is null	commit \| commitdiff \| tree
2006-06-23	amwaterhouse	Case wrapped jar file, wrapped preference true dealt...	commit \| commitdiff \| tree
2006-06-23	amwaterhouse	No need for repaint	commit \| commitdiff \| tree
2006-06-23	amwaterhouse	Uses FeaturesFile parser, GFF and Jalview	commit \| commitdiff \| tree
2006-06-23	amwaterhouse	++ --	commit \| commitdiff \| tree
2006-06-22	amwaterhouse	Check featureLinks is not null	commit \| commitdiff \| tree
2006-06-22	amwaterhouse	ParseFeaturesFile takes protocol as arg	commit \| commitdiff \| tree
2006-06-22	amwaterhouse	Takes AlignFrame as arg, to update progressbar	commit \| commitdiff \| tree
2006-06-22	amwaterhouse	AlignFrame is now the FeatureListener	commit \| commitdiff \| tree
2006-06-22	amwaterhouse	Fetch DBRefs	commit \| commitdiff \| tree
2006-06-22	amwaterhouse	Ye olde SequenceFeatureFetcher	commit \| commitdiff \| tree
2006-06-22	amwaterhouse	Renamed to DBRefFetcher	commit \| commitdiff \| tree
2006-06-22	amwaterhouse	Not used in Jalview	commit \| commitdiff \| tree
2006-06-15	amwaterhouse	Use spice-3d das1 source list for nowjalview/gui/DasSourceBr...	commit \| commitdiff \| tree
2006-06-15	amwaterhouse	Fixed to trial registry at the moment	commit \| commitdiff \| tree
2006-06-15	amwaterhouse	new files	commit \| commitdiff \| tree
2006-06-15	amwaterhouse	Not using AxisDasRegistry	commit \| commitdiff \| tree
2006-06-15	amwaterhouse	Not needed	commit \| commitdiff \| tree
2006-06-15	amwaterhouse	check helperUrl is not null	commit \| commitdiff \| tree
2006-06-15	amwaterhouse	Das client files	commit \| commitdiff \| tree
2006-06-15	amwaterhouse	Correction - use start and end	commit \| commitdiff \| tree
2006-06-15	amwaterhouse	Dont add start and end for the moment	commit \| commitdiff \| tree
2006-06-15	amwaterhouse	Wrap alignment moved to alignFrame	commit \| commitdiff \| tree
2006-06-15	amwaterhouse	Non positional features shown as mouse over	commit \| commitdiff \| tree
2006-06-15	amwaterhouse	fr.findAllFeatures on init	commit \| commitdiff \| tree
2006-06-15	amwaterhouse	Correct citation	commit \| commitdiff \| tree
2006-06-15	amwaterhouse	Unnecessary import	commit \| commitdiff \| tree
2006-06-15	amwaterhouse	FeatureRenderer synchronized featuresAdded method	commit \| commitdiff \| tree
2006-06-15	amwaterhouse	Maintain status and position only for uniprot parsing	commit \| commitdiff \| tree
2006-06-14	amwaterhouse	Fileloading progressbar	commit \| commitdiff \| tree
2006-06-14	amwaterhouse	Status is now in otherData of feature	commit \| commitdiff \| tree
2006-06-14	amwaterhouse	Sequence checks for duplicate features	commit \| commitdiff \| tree
2006-06-14	amwaterhouse	parseAppletParam	commit \| commitdiff \| tree
2006-06-14	amwaterhouse	parseAppletParameter	commit \| commitdiff \| tree
2006-06-09	amwaterhouse	Retrieve multiple EMBL ids	commit \| commitdiff \| tree
2006-06-09	amwaterhouse	Size adjustments for MacOSX	commit \| commitdiff \| tree
2006-06-09	amwaterhouse	Remove unnecessary lines	commit \| commitdiff \| tree
2006-06-09	amwaterhouse	createColourFromName if not specified	commit \| commitdiff \| tree
2006-06-09	amwaterhouse	Export annotations as Jalview format	commit \| commitdiff \| tree
2006-06-09	amwaterhouse	Feature and annotation parsing moved to io	commit \| commitdiff \| tree
2006-06-09	amwaterhouse	otherDetails	commit \| commitdiff \| tree
2006-06-09	amwaterhouse	Remove getsfarray	commit \| commitdiff \| tree
2006-06-09	amwaterhouse	getSequencesArray	commit \| commitdiff \| tree
2006-06-09	amwaterhouse	setAcceptAllFileFilter fixes bug on MacOSX	commit \| commitdiff \| tree
2006-06-09	amwaterhouse	Export features / annotations	commit \| commitdiff \| tree
2006-06-09	amwaterhouse	Save text to file	commit \| commitdiff \| tree
2006-06-09	amwaterhouse	createColourFromName	commit \| commitdiff \| tree
2006-06-09	amwaterhouse	Function not used	commit \| commitdiff \| tree
2006-06-09	amwaterhouse	readAnnotationFile	commit \| commitdiff \| tree
2006-06-09	amwaterhouse	parseFeaturesFile	commit \| commitdiff \| tree
2006-06-09	amwaterhouse	Annotation/feature exporter	commit \| commitdiff \| tree
2006-06-07	amwaterhouse	New link image	commit \| commitdiff \| tree
2006-06-07	amwaterhouse	Wrap alignment added to preferences	commit \| commitdiff \| tree
2006-06-07	amwaterhouse	Checks in case DasSource is null	commit \| commitdiff \| tree
2006-06-07	amwaterhouse	Smaller file size	commit \| commitdiff \| tree
2006-06-07	amwaterhouse	New link image	commit \| commitdiff \| tree
2006-06-07	amwaterhouse	DAS client libraries	commit \| commitdiff \| tree
2006-06-07	amwaterhouse	Remove unnecessary ints	commit \| commitdiff \| tree
2006-06-07	amwaterhouse	DAS sources added	commit \| commitdiff \| tree
2006-06-07	amwaterhouse	PopupMenu displays URL links	commit \| commitdiff \| tree
2006-06-07	amwaterhouse	ignore begin==0 and end==0 for the moment	commit \| commitdiff \| tree
2006-06-07	amwaterhouse	Create random colour only if Colour is not specified	commit \| commitdiff \| tree
2006-06-07	amwaterhouse	Implements FeatureListener	commit \| commitdiff \| tree
2006-06-07	amwaterhouse	new DasSequenceFetcher	commit \| commitdiff \| tree
2006-06-07	amwaterhouse	DAS Settings tab added	commit \| commitdiff \| tree
2006-06-07	amwaterhouse	Use a label with html instead of textarea	commit \| commitdiff \| tree
2006-06-07	amwaterhouse	Remove position, add score and links	commit \| commitdiff \| tree
2006-06-07	amwaterhouse	Parameter to show feature settings	commit \| commitdiff \| tree
2006-06-07	amwaterhouse	Tooltips for features, links for features added	commit \| commitdiff \| tree
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