| 2016-02-12 |
gmungoc | JAL-1270 remove trailing space + test
|
commit | commitdiff | tree |
| 2016-02-12 |
gmungoc | JAL-1705 various refactoring towards Uniprot-to-Ensembl...
|
commit | commitdiff | tree |
| 2016-02-12 |
gmungoc | JAL-1191 additions to SOLite, tweak to test
|
commit | commitdiff | tree |
| 2016-02-12 |
gmungoc | JAL-1705 take feature ID for description if nothing...
|
commit | commitdiff | tree |
| 2016-02-12 |
gmungoc | JAL-282 wrap very long id in tooltip
|
commit | commitdiff | tree |
| 2016-02-12 |
gmungoc | JAL-1705 JAL-1686 stronger SequenceFeature.equals(...
|
commit | commitdiff | tree |
| 2016-02-12 |
gmungoc | JAL-2010 simple prototype of 'Highlight Selection'...
|
commit | commitdiff | tree |
| 2016-02-12 |
gmungoc | JAL-2008 updates for String[] to List<String> change
|
commit | commitdiff | tree |
| 2016-02-12 |
gmungoc | JAL-2008 avoid unnecessary repaints; signatures changed...
|
commit | commitdiff | tree |
| 2016-02-12 |
gmungoc | JAL-265 updated help text
|
commit | commitdiff | tree |
| 2016-02-12 |
gmungoc | Merge branch 'develop' into
|
commit | commitdiff | tree |
| 2016-02-05 |
gmungoc | JAL-2006 scale even very small score ranges to a usable...
|
commit | commitdiff | tree |
| 2016-02-04 |
gmungoc | JAL-1544 spelling fix
|
commit | commitdiff | tree |
| 2016-02-04 |
gmungoc | Merge branch 'develop' into features/JAL-653_JAL-1766_htslib...
|
commit | commitdiff | tree |
| 2016-02-04 |
gmungoc | JAL-2005 added (stable) sort methods parameterised by
|
commit | commitdiff | tree |
| 2016-02-04 |
gmungoc | JAL-599 bug fixed so array of visible types is populated
|
commit | commitdiff | tree |
| 2016-02-04 |
gmungoc | JAL-1705 temporary variable to aid inspection in debugger
|
commit | commitdiff | tree |
| 2016-02-04 |
gmungoc | JAL-1705 additional tests, validation regexp tweaks...
|
commit | commitdiff | tree |
| 2016-02-04 |
gmungoc | JAL-2003 export features on alignment, not alignment...
|
commit | commitdiff | tree |
| 2016-02-01 |
gmungoc | JAL-1705 further unit tests
|
commit | commitdiff | tree |
| 2016-02-01 |
gmungoc | JAL-1705 set Uniprot xref as 'source dbref' (for SIFTS...
|
commit | commitdiff | tree |
| 2016-02-01 |
gmungoc | JAL-1191 more terms added to SequenceOntologyLite
|
commit | commitdiff | tree |
| 2016-02-01 |
gmungoc | Merge branch 'develop' into features/JAL-653_JAL-1766_htslib...
|
commit | commitdiff | tree |
| 2016-02-01 |
gmungoc | JAL-1705 tests added
|
commit | commitdiff | tree |
| 2016-02-01 |
gmungoc | JAL-1705 JAL-1191 SequenceOntologyLite added as hard...
|
commit | commitdiff | tree |
| 2016-01-30 |
gmungoc | JAL-1705 refactored cross-reference fetching (CCDS...
|
commit | commitdiff | tree |
| 2016-01-29 |
gmungoc | JAL-1705 fetch Uniprot and PDB xrefs for Ensembl protein...
|
commit | commitdiff | tree |
| 2016-01-29 |
gmungoc | JAL-1705 copy feature settings when opening a split...
|
commit | commitdiff | tree |
| 2016-01-28 |
gmungoc | JAL-1705 more correct title (CDS not cDNA) on split...
|
commit | commitdiff | tree |
| 2016-01-28 |
gmungoc | JAL-1705 refine feature copying to including 5' and...
|
commit | commitdiff | tree |
| 2016-01-28 |
gmungoc | JAL-1705 tests added, minor bugfix and refactoring
|
commit | commitdiff | tree |
| 2016-01-28 |
gmungoc | Merge branch 'develop' into JAL-1705_trialMerge
|
commit | commitdiff | tree |
| 2016-01-28 |
gmungoc | JAL-1551 wrap enum declarations
|
commit | commitdiff | tree |
| 2016-01-28 |
gmungoc | JAL-1705 merge contiguous ranges when constructing...
|
commit | commitdiff | tree |
| 2016-01-27 |
gmungoc | JAL-1705 add exon name to features and render on peptide...
|
commit | commitdiff | tree |
| 2016-01-27 |
gmungoc | JAL-1705 use GET for single queries; set gene name...
|
commit | commitdiff | tree |
| 2016-01-26 |
gmungoc | JAL-1705 derive transcript sequences from gene sequence...
|
commit | commitdiff | tree |
| 2016-01-25 |
gmungoc | JAL-1705 EnsemblGene added, and related refactoring
|
commit | commitdiff | tree |
| 2016-01-25 |
gmungoc | JAL-1997 database browser support tooltip if available
|
commit | commitdiff | tree |
| 2016-01-23 |
gmungoc | JAL-1355 get dialog title from message bundle
|
commit | commitdiff | tree |
| 2016-01-23 |
gmungoc | JAL-1705 copy 'show sequence features' setting in ...
|
commit | commitdiff | tree |
| 2016-01-23 |
gmungoc | JAL-1705 todo comment re writing DBRefEntry/SequenceFeature...
|
commit | commitdiff | tree |
| 2016-01-23 |
gmungoc | JAL-1705 compute peptide variants from dna; add "consequence...
|
commit | commitdiff | tree |
| 2016-01-21 |
gmungoc | JAL-1705 transfer features to the dataset sequence...
|
commit | commitdiff | tree |
| 2016-01-21 |
gmungoc | JAL-1705 reworked Ensembl clients now fetching and...
|
commit | commitdiff | tree |
| 2016-01-21 |
gmungoc | JAL-653 refactor / tidy
|
commit | commitdiff | tree |
| 2016-01-21 |
gmungoc | JAL-653 JAL-1705 set strand for GFF sequence feature
|
commit | commitdiff | tree |
| 2016-01-21 |
gmungoc | JAL-1705 removed (only) usage of otherwise unused constant
|
commit | commitdiff | tree |
| 2016-01-21 |
gmungoc | JAL-653 comments/javadoc tidy only
|
commit | commitdiff | tree |
| 2016-01-21 |
gmungoc | JAL-1796 parse ensembl genomic coordinates to set start...
|
commit | commitdiff | tree |
| 2016-01-21 |
gmungoc | JAL-1705 AlignmentUtils method renamed
|
commit | commitdiff | tree |
| 2016-01-21 |
gmungoc | JAL-1705 ENSEMBL added, unused constants removed
|
commit | commitdiff | tree |
| 2016-01-21 |
gmungoc | JAL-1705 features transferred to CDS sequence; makeExon...
|
commit | commitdiff | tree |
| 2016-01-21 |
gmungoc | JAL-1705 redundant comment removed
|
commit | commitdiff | tree |
| 2016-01-21 |
gmungoc | JAL-1705 suppress jvsuffix (for sequence id matching...
|
commit | commitdiff | tree |
| 2016-01-21 |
gmungoc | JAL-1705 unused import removed
|
commit | commitdiff | tree |
| 2016-01-21 |
gmungoc | JAL-1705 include dummy sequences in returned alignment
|
commit | commitdiff | tree |
| 2016-01-21 |
gmungoc | JAL-1705 tidy and todo comment, no functional change
|
commit | commitdiff | tree |
| 2016-01-21 |
gmungoc | JAL-1705 tests for amended toString
|
commit | commitdiff | tree |
| 2016-01-21 |
gmungoc | JAL-1705 added isSequenceVariant(), commonly used SO...
|
commit | commitdiff | tree |
| 2016-01-21 |
gmungoc | JAL-1705 isFromForwardStrand added; toString (for debug...
|
commit | commitdiff | tree |
| 2016-01-21 |
gmungoc | JAL-1705 canonicalise ENSEMBL name; code tidy
|
commit | commitdiff | tree |
| 2016-01-21 |
gmungoc | JAL-1705 get xrefs only for dna/peptide; code tidy
|
commit | commitdiff | tree |
| 2016-01-21 |
gmungoc | JAL-1705 toString() added (for debugging)
|
commit | commitdiff | tree |
| 2016-01-21 |
gmungoc | JAL-1705 isEmpty() and (debug) toString() methods added
|
commit | commitdiff | tree |
| 2016-01-12 |
gmungoc | JAL-1191 cache isA (great-)grandparents as well for...
|
commit | commitdiff | tree |
| 2016-01-11 |
gmungoc | Merge branch 'develop' of https://source.jalview.org...
|
commit | commitdiff | tree |
| 2016-01-11 |
gmungoc | JAL-1989 additional ways to 'mirror' show/hide columns...
|
commit | commitdiff | tree |
| 2016-01-11 |
gmungoc | JAL-1989 map hidden column ranges
|
commit | commitdiff | tree |
| 2016-01-11 |
gmungoc | JAL-1989 more unit tests and encapsulation for ColumnSelection
|
commit | commitdiff | tree |
| 2016-01-11 |
gmungoc | JAL-1544 "more than" not "more that"
|
commit | commitdiff | tree |
| 2016-01-08 |
gmungoc | JAL-1705 DbSourceProxy properties converted to methods...
|
commit | commitdiff | tree |
| 2016-01-05 |
gmungoc | JAL-653 updating 'align as' tests to match latest tweaks...
|
commit | commitdiff | tree |
| 2016-01-05 |
gmungoc | Merge remote-tracking branch 'origin/features/JAL-1705_ensem...
|
commit | commitdiff | tree |
| 2016-01-05 |
gmungoc | JAL-653 typed map for feature colours in method signature
|
commit | commitdiff | tree |
| 2016-01-05 |
gmungoc | JAL-1191 check for obsolete term when descriptions...
|
commit | commitdiff | tree |
| 2015-12-23 |
gmungoc | JAL-1191 unzipped OBO file removed
|
commit | commitdiff | tree |
| 2015-12-23 |
gmungoc | JAL-1191 zipped SO OBO file added to /resources, more...
|
commit | commitdiff | tree |
| 2015-12-22 |
gmungoc | JAL-1191 more test cases
|
commit | commitdiff | tree |
| 2015-12-22 |
gmungoc | JAL-1191 and provide the SO OBO file in /resources :-)
|
commit | commitdiff | tree |
| 2015-12-22 |
gmungoc | JAL-1191 SequenceOntology wrapping/caching SO.OBO via...
|
commit | commitdiff | tree |
| 2015-12-22 |
gmungoc | JAL-1191 stub class for a SequenceOntology wrapper
|
commit | commitdiff | tree |
| 2015-12-22 |
gmungoc | JAL-1551 don't autoformat /* comments */
|
commit | commitdiff | tree |
| 2015-12-22 |
gmungoc | JAL-1421 parameterised map constructor used
|
commit | commitdiff | tree |
| 2015-12-22 |
gmungoc | JAL-653 encapsulate Strand, Attributes, Status of SequenceFe...
|
commit | commitdiff | tree |
| 2015-12-22 |
gmungoc | JAL-653 realise virtual mappings and align when adding...
|
commit | commitdiff | tree |
| 2015-12-22 |
gmungoc | JAL-391 new Calculate options to Reverse, Reverse Complement...
|
commit | commitdiff | tree |
| 2015-12-22 |
gmungoc | JAL-653 AlignedCodonFrame collections changed from...
|
commit | commitdiff | tree |
| 2015-12-22 |
gmungoc | JAL-653 set showSequenceFeatures=true on loading a...
|
commit | commitdiff | tree |
| 2015-12-22 |
gmungoc | JAL-653 GFF new/refactored helper classes
|
commit | commitdiff | tree |
| 2015-12-22 |
gmungoc | JAL-653 AlignedCodonFrame internal refactor, merge...
|
commit | commitdiff | tree |
| 2015-12-22 |
gmungoc | JAL-653 hold AlignedCodonFrame collections as list...
|
commit | commitdiff | tree |
| 2015-12-03 |
gmungoc | JAL-653 code tidy / tests for 'realise gff mappings'
|
commit | commitdiff | tree |
| 2015-12-03 |
gmungoc | JAL-653 handle reverse strand mapping in SearchResults...
|
commit | commitdiff | tree |
| 2015-12-03 |
gmungoc | JAL-653 mappings always reside on the dataset alignment...
|
commit | commitdiff | tree |
| 2015-12-03 |
gmungoc | JAL-653 handle reverse strand mappings also
|
commit | commitdiff | tree |
| 2015-12-03 |
gmungoc | JAL-1827 code and comment tidy up
|
commit | commitdiff | tree |
| 2015-12-02 |
gmungoc | JAL-1827 refactored to handle missing residues better
|
commit | commitdiff | tree |
| 2015-12-02 |
gmungoc | JAL-1827 added overloaded method for convenience
|
commit | commitdiff | tree |
| 2015-12-02 |
gmungoc | JAL-1827 reverted text on generic sequence fetcher...
|
commit | commitdiff | tree |
| next |
git://source.jalview.org / jalview.git / search