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JAL-2010 refactoring todo
2016-04-01 tcofoegbuJAL-2048 Update to structureviz2 package from cytoscape
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2016-04-01 tcofoegbuJAL-2045 JAL-2047 improvement for sorting PDB quality...
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2016-03-31 tcofoegbuJAL-2035 improvement to add binding to multiple model
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2016-03-30 tcofoegbuJAL-1668 further clean-up of popup menu and NPE check...
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2016-03-30 tcofoegbuJAL-2038 bug fix for NPE while setting progress message...
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2016-03-28 tcofoegbumerge
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2016-03-28 tcofoegbuJAL-1919 Fixed broken test in DBRefUtilsTest
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2016-03-28 tcofoegbuJAL-1668 removed redundant UI elements in PopupMenu...
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2016-03-25 tcofoegbuJAL-2035 improvement to bind Jalview to Chimera model...
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2016-03-24 tcofoegbuJAL-1919 Settings to disable duplicate generation of...
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2016-03-24 tcofoegbuJAL-1479 Commented out debug sysout's for SiftsClient
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2016-03-24 tcofoegbuJAL-1919 Added ability to generate temprature factor...
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2016-03-24 tcofoegbumerge
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2016-03-24 tcofoegbufixed applet build
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2016-03-24 tcofoegbuJAL-1919 set DEFUALT_STRUCTURE_FORMAT to PDB
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2016-03-23 tcofoegbumerge
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2016-03-23 tcofoegbuJAL-2009 added programmatic custom feature setting...
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2016-03-22 tcofoegburesolve conflict with Mungo's merge
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2016-03-22 tcofoegbuJAL-1919 code improvement to make PDB sequence fetcher...
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2016-03-21 tcofoegbuJAL-1919 refactor moved StructureViewerSettings
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2016-03-21 tcofoegbumerged features/JAL-1919_mmCIF-Support to develop
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2016-03-21 tcofoegbudevelop merge
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2016-03-21 tcofoegbuJAL-2028 added improvement for preconfigured ordering...
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2016-03-21 tcofoegbudevelop merge
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2016-03-21 tcofoegbumerge
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2016-03-21 tcofoegbumungo merge
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2016-03-21 tcofoegbudevelop merge
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2016-03-21 tcofoegbuJAL-1667 Changed PDBSearchPanel's search result layout...
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2016-03-16 tcofoegbuJAL-2028 improvment to the displayed column customisation
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2016-03-15 tcofoegbuJAL-1919 refined structure view annotation settings...
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2016-03-11 tcofoegbuJAL-1478 Fixed ArrayIndexOutOfBoundsException while...
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2016-03-11 tcofoegbumerge
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2016-03-11 tcofoegbuJAL-2026 Bug fix for best quality filter
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2016-03-11 tcofoegbuJAL-1818 reimplemented sequence and annotation processing...
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2016-03-10 tcofoegbudevelop merge
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2016-03-10 tcofoegbuJAL-2025 added code to stanitise query for structure...
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2016-03-10 tcofoegbuJAL-2024 code to enforce case insensitivity for manual...
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2016-03-03 tcofoegbuJAL-1919 fixed bug causing PDBfile test failure
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2016-03-03 tcofoegbudevelop merge
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2016-03-03 tcofoegbuJAL-1919 updated unicode mapping symbol
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2016-03-03 tcofoegbuJAL-1919 updated unicode symbol for mapping
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2016-03-03 tcofoegbuJAL-1919 PDBfile and JmolParser refactor
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2016-02-26 tcofoegbudevelop merge
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2016-02-26 tcofoegbuJAL-2009 reverted 'RES NUM' feature back to 'RESNUM'
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2016-02-26 tcofoegbuJAL-1994 updated implementation for broken tests
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2016-02-26 tcofoegbuJAL-1994 fix for broken tests
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2016-02-25 tcofoegbuJAL-1919 initial support for mmCIF using JMol API....
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2016-02-23 tcofoegbudevelop merge
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2016-02-23 tcofoegbuJAL-1720 renamed Structure Chooser filters according...
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2016-02-22 tcofoegbuJAL-1720 JAL-2002 improvement for 'uniprot coverage...
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2016-02-22 tcofoegbuJAL-1944 bugfix for error when exporting hidden sequences...
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2016-02-19 tcofoegbuJAL-2009 Codes to enable storing inserted residues...
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2016-02-09 tcofoegbumerge develop
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2016-02-09 tcofoegbuJAL-1976 catch and handle OOM Error
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2016-02-09 tcofoegbuJAL-1976 Added progress indicators for HTML_SVG and...
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2016-02-09 tcofoegbuJAL-1975 updated image export pipeline to produce more...
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2016-02-09 tcofoegbuJAL-1957 deleted stale comment
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2016-02-09 tcofoegbumerge
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2016-02-09 tcofoegbuJAL-1957 enabled multi-chain mapping and highlight...
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2016-01-29 tcofoegbumerge from develop
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2016-01-29 tcofoegbuJAL-1979 refactor out duplicated similar block of code...
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2016-01-27 tcofoegbuJAL-1479 fixed off-by-one error in SIFTS mapping output...
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2016-01-26 tcofoegbudevelop merge
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2016-01-26 tcofoegbuJAL-1999 JAL-1479 implemented configurable fail-safe...
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2016-01-25 tcofoegbuJAL-1998 bugfix for division by zero error for PDB...
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2016-01-21 tcofoegbuJAL-1479 JAL-1979 bugfix to check entire annotation...
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2016-01-21 tcofoegbuJAL-1479 JAL-1979 updated the modified-aminoacid triplet...
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2016-01-21 tcofoegbumerge
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2016-01-21 tcofoegbuJAL-1986 JAL-1996 separated out appletDeploment page...
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2016-01-21 tcofoegbumerge
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2016-01-21 tcofoegbumerge
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2016-01-21 tcofoegbuJAL-1994 bugfix in build.xml to prevent proguard from...
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2016-01-21 tcofoegbuJAL-1919 basic support for importing and viewing mmCIF...
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2016-01-11 tcofoegbuJAL-1990 added a progress indicator for Structure Chooser...
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2016-01-11 tcofoegbumerge
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2016-01-11 tcofoegbuJAL-1991 bug fix for some flat-file printers to check...
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2016-01-07 tcofoegbumerge
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2016-01-07 tcofoegbuJAL-1479 implemented timestamp based caching of SIFTS...
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2015-11-25 tcofoegbuJAL-1479 refactored DBRef fetching code to StructureChooser...
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2015-11-25 tcofoegbuJAL-1479 applet build debug
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2015-11-25 tcofoegbuJAL-1479 bugfix after decoupling SIFTS preference settings
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2015-11-23 tcofoegbuJAL-1479 commented out DBRef fetching code from SIFTS...
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2015-11-17 tcofoegbuJAL-1479 Refactored Sifts configuration preference...
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2015-11-16 tcofoegbuJAL-1967 JAL-1479 refactored sequence<->structure mapping...
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2015-11-13 tcofoegbuJAL-1479 added transfer of residue annotation for SIFTS...
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2015-11-11 tcofoegbuJAL-1479 JAL-1957 Added code to enable simultaneous...
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2015-11-11 tcofoegbumerge of SIFTs Branch
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2015-11-11 tcofoegbumerge
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2015-11-11 tcofoegbuJAL-1957 JAL-1479 Further optimisation of SIFTs Client...
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2015-11-10 tcofoegbuJAL 1960 added code to restrict structure chooser to...
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2015-11-05 tcofoegbuJAL-1479 SiftClient house keeping
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2015-11-05 tcofoegbuJAL-1942 JAL-1479 refactored SequenceI.getDBRef/SequenceI...
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2015-11-02 tcofoegbuJAL-1955 Uniprot sequence fetcher refactor
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2015-10-29 tcofoegbuJAL-1926 JAL-1479 updated PDBfile fetcher to add sourceDBRef...
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2015-10-28 tcofoegbuJAL-1479 added support for SIFTs mapping output viewing...
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2015-10-28 tcofoegbuJAL-1952 bugfix
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2015-10-28 tcofoegbuJAL-1887 JAL-1479 bugfix for incorrect start/end for...
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2015-10-22 tcofoegbuJAL-1479 added basic support for SIFTs mapping - more...
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2015-10-22 tcofoegbuJAL-1479 implemented preferences for SIFTs / Needleman...
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2015-10-22 tcofoegbuJAL-1942 JAL-1479 DBRefFetcher refactor
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