| 2006-07-25 |
amwaterhouse | If seq has a dataset, dont clear it
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commit | commitdiff | tree |
| 2006-07-25 |
amwaterhouse | Extends AlignFile, dataset has PDBEntry added
|
commit | commitdiff | tree |
| 2006-07-25 |
amwaterhouse | Can load PDB file from disk
|
commit | commitdiff | tree |
| 2006-07-21 |
amwaterhouse | correct icon draw bug
|
commit | commitdiff | tree |
| 2006-07-21 |
amwaterhouse | Corrected hidden row feature render bug
|
commit | commitdiff | tree |
| 2006-07-21 |
amwaterhouse | Put DBRefFether in a new thread
|
commit | commitdiff | tree |
| 2006-07-21 |
amwaterhouse | Remove start end for now??
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commit | commitdiff | tree |
| 2006-07-21 |
amwaterhouse | Add pdb ref
|
commit | commitdiff | tree |
| 2006-07-21 |
amwaterhouse | getViewAsString can ignore sequenceGroup
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commit | commitdiff | tree |
| 2006-07-21 |
amwaterhouse | this.seqs = seqs
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commit | commitdiff | tree |
| 2006-07-21 |
amwaterhouse | hidden seqs added
|
commit | commitdiff | tree |
| 2006-07-21 |
amwaterhouse | dbrefs added
|
commit | commitdiff | tree |
| 2006-07-21 |
amwaterhouse | show hide stuff moved from columnSelection
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commit | commitdiff | tree |
| 2006-07-21 |
amwaterhouse | Saves hidden seqs and DBRefs
|
commit | commitdiff | tree |
| 2006-07-21 |
amwaterhouse | av.showHiddenMarkers check
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commit | commitdiff | tree |
| 2006-07-21 |
amwaterhouse | Show hide cols and rows
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commit | commitdiff | tree |
| 2006-07-21 |
amwaterhouse | Hide Selected Cols
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commit | commitdiff | tree |
| 2006-07-21 |
amwaterhouse | DBRefs now array
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commit | commitdiff | tree |
| 2006-07-21 |
amwaterhouse | getFullAlignment
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commit | commitdiff | tree |
| 2006-07-21 |
amwaterhouse | Remove note
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commit | commitdiff | tree |
| 2006-07-21 |
amwaterhouse | DBRef is an array, not vector
|
commit | commitdiff | tree |
| 2006-07-21 |
amwaterhouse | DBRefs and HiddenRegions saved
|
commit | commitdiff | tree |
| 2006-07-21 |
amwaterhouse | Load tree from file constructor fixed
|
commit | commitdiff | tree |
| 2006-07-19 |
amwaterhouse | Make new seq[] when modifying hidden bits
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commit | commitdiff | tree |
| 2006-07-19 |
amwaterhouse | Remove b keystroke
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commit | commitdiff | tree |
| 2006-07-19 |
amwaterhouse | showTranslation is not a checkbox
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commit | commitdiff | tree |
| 2006-07-19 |
amwaterhouse | Merge new frame buttons added
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commit | commitdiff | tree |
| 2006-07-19 |
amwaterhouse | Output to text window added
|
commit | commitdiff | tree |
| 2006-07-19 |
amwaterhouse | Correct highlighted res height
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commit | commitdiff | tree |
| 2006-07-19 |
amwaterhouse | Save output use whole alignment
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commit | commitdiff | tree |
| 2006-07-19 |
amwaterhouse | Original tree data output in PFAM format
|
commit | commitdiff | tree |
| 2006-07-19 |
amwaterhouse | Count uniprot refs
|
commit | commitdiff | tree |
| 2006-07-19 |
amwaterhouse | Highlight hidden columns after revealing
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commit | commitdiff | tree |
| 2006-07-19 |
amwaterhouse | datasetSeq bug
|
commit | commitdiff | tree |
| 2006-07-19 |
amwaterhouse | Check for all gapped seqs
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commit | commitdiff | tree |
| 2006-07-19 |
amwaterhouse | Use Selection group to define sequence range to fetch...
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commit | commitdiff | tree |
| 2006-07-19 |
amwaterhouse | Copy works with selection area
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commit | commitdiff | tree |
| 2006-07-18 |
amwaterhouse | Modified for hidden region/group calculation
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commit | commitdiff | tree |
| 2006-07-18 |
amwaterhouse | Use selection area with hidden columns in calculations
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commit | commitdiff | tree |
| 2006-07-18 |
amwaterhouse | omitHiddenColumns
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commit | commitdiff | tree |
| 2006-07-18 |
amwaterhouse | Button to view original data
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commit | commitdiff | tree |
| 2006-07-18 |
amwaterhouse | Takes strings, not seqs
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commit | commitdiff | tree |
| 2006-07-18 |
amwaterhouse | getSelectionAsNewSequence added
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commit | commitdiff | tree |
| 2006-07-18 |
amwaterhouse | Takes a string, not sequence
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commit | commitdiff | tree |
| 2006-07-18 |
amwaterhouse | Works on strings, not seqs
|
commit | commitdiff | tree |
| 2006-07-18 |
amwaterhouse | Takes string[] instead of seq[]
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commit | commitdiff | tree |
| 2006-07-17 |
amwaterhouse | Towards an auto dbref fetcher
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commit | commitdiff | tree |
| 2006-07-17 |
amwaterhouse | Dasobert updates, labels and prefix changes
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commit | commitdiff | tree |
| 2006-07-14 |
amwaterhouse | Just fetch features for selected seqs
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commit | commitdiff | tree |
| 2006-07-13 |
amwaterhouse | DAS feature retrieval updated
|
commit | commitdiff | tree |
| 2006-07-13 |
amwaterhouse | Selected DAS sources may differ from default
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commit | commitdiff | tree |
| 2006-07-13 |
amwaterhouse | Sequence is private
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commit | commitdiff | tree |
| 2006-07-12 |
amwaterhouse | Launch full app parameter takes servlet URL
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commit | commitdiff | tree |
| 2006-07-12 |
amwaterhouse | Das source browser
|
commit | commitdiff | tree |
| 2006-07-12 |
amwaterhouse | Authority, type and labels
|
commit | commitdiff | tree |
| 2006-07-12 |
amwaterhouse | sequences are private in SequenceGroup
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commit | commitdiff | tree |
| 2006-07-12 |
amwaterhouse | Append start and end
|
commit | commitdiff | tree |
| 2006-07-07 |
amwaterhouse | Dont discard label if different to H or E
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commit | commitdiff | tree |
| 2006-07-07 |
amwaterhouse | Redundant Remove Redundancy Removed
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commit | commitdiff | tree |
| 2006-07-07 |
amwaterhouse | Sequence numbering maintained
|
commit | commitdiff | tree |
| 2006-07-07 |
amwaterhouse | Changeable background colour
|
commit | commitdiff | tree |
| 2006-07-07 |
amwaterhouse | Make sure bond has a colour
|
commit | commitdiff | tree |
| 2006-07-07 |
amwaterhouse | Make sure atom has a colour
|
commit | commitdiff | tree |
| 2006-07-07 |
amwaterhouse | Highlight sequences before seleting
|
commit | commitdiff | tree |
| 2006-07-07 |
amwaterhouse | Corrected for hidden rows
|
commit | commitdiff | tree |
| 2006-07-07 |
amwaterhouse | Row might have height of zero
|
commit | commitdiff | tree |
| 2006-07-07 |
amwaterhouse | check control down if c pressed in cursor mode
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commit | commitdiff | tree |
| 2006-07-07 |
amwaterhouse | changeColour is public
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commit | commitdiff | tree |
| 2006-07-07 |
amwaterhouse | Coms might be null
|
commit | commitdiff | tree |
| 2006-07-07 |
amwaterhouse | New panel layouts
|
commit | commitdiff | tree |
| 2006-07-07 |
amwaterhouse | Offsets
|
commit | commitdiff | tree |
| 2006-07-07 |
amwaterhouse | Optimised PID method
|
commit | commitdiff | tree |
| 2006-07-07 |
amwaterhouse | Make 1.1 compatible
|
commit | commitdiff | tree |
| 2006-07-07 |
amwaterhouse | Move position of stopLoading for 1.5 people
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commit | commitdiff | tree |
| 2006-07-07 |
amwaterhouse | make 1.1 compatible
|
commit | commitdiff | tree |
| 2006-07-07 |
amwaterhouse | Dont write graph type twice
|
commit | commitdiff | tree |
| 2006-07-07 |
amwaterhouse | Checks on drawing characters and if sequence ref has...
|
commit | commitdiff | tree |
| 2006-07-07 |
amwaterhouse | Colour argument added, to mirror applet view
|
commit | commitdiff | tree |
| 2006-07-07 |
amwaterhouse | Prepare for launchFullApplication
|
commit | commitdiff | tree |
| 2006-07-07 |
amwaterhouse | Highlight sequences to be deleted before deleting,...
|
commit | commitdiff | tree |
| 2006-07-07 |
amwaterhouse | Check row.annotations is not null
|
commit | commitdiff | tree |
| 2006-07-07 |
amwaterhouse | SelectionGroup is initially null
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commit | commitdiff | tree |
| 2006-07-07 |
amwaterhouse | Replaced by AnnotationFile
|
commit | commitdiff | tree |
| 2006-06-23 |
amwaterhouse | Uniprot may have several accession ids
|
commit | commitdiff | tree |
| 2006-06-23 |
amwaterhouse | Parse HTML links from jalview features file
|
commit | commitdiff | tree |
| 2006-06-23 |
amwaterhouse | DBRefFetcher replaces SequenceFeatureFetcher
|
commit | commitdiff | tree |
| 2006-06-23 |
amwaterhouse | Check if featuresDisplayed is null
|
commit | commitdiff | tree |
| 2006-06-23 |
amwaterhouse | Case wrapped jar file, wrapped preference true dealt...
|
commit | commitdiff | tree |
| 2006-06-23 |
amwaterhouse | No need for repaint
|
commit | commitdiff | tree |
| 2006-06-23 |
amwaterhouse | Uses FeaturesFile parser, GFF and Jalview
|
commit | commitdiff | tree |
| 2006-06-23 |
amwaterhouse | ++ --
|
commit | commitdiff | tree |
| 2006-06-22 |
amwaterhouse | Check featureLinks is not null
|
commit | commitdiff | tree |
| 2006-06-22 |
amwaterhouse | ParseFeaturesFile takes protocol as arg
|
commit | commitdiff | tree |
| 2006-06-22 |
amwaterhouse | Takes AlignFrame as arg, to update progressbar
|
commit | commitdiff | tree |
| 2006-06-22 |
amwaterhouse | AlignFrame is now the FeatureListener
|
commit | commitdiff | tree |
| 2006-06-22 |
amwaterhouse | Fetch DBRefs
|
commit | commitdiff | tree |
| 2006-06-22 |
amwaterhouse | Ye olde SequenceFeatureFetcher
|
commit | commitdiff | tree |
| 2006-06-22 |
amwaterhouse | Renamed to DBRefFetcher
|
commit | commitdiff | tree |
| 2006-06-22 |
amwaterhouse | Not used in Jalview
|
commit | commitdiff | tree |
| 2006-06-15 |
amwaterhouse | Use spice-3d das1 source list for nowjalview/gui/DasSourceBr...
|
commit | commitdiff | tree |
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