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2015-07-08	gmungoc	JAL-1759 merge from develop	commit \| commitdiff \| tree
2015-07-03	gmungoc	JAL-1759 updated Jmol version in nbproject, install...	commit \| commitdiff \| tree
2015-07-01	gmungoc	Merge branch 'develop' into features/JAL-1759jmolUpdate	commit \| commitdiff \| tree
2015-07-01	gmungoc	JAL-1799 deduct more space for decorators on Windows	commit \| commitdiff \| tree
2015-07-01	gmungoc	JAL-1619 align the added sequences to match what they...	commit \| commitdiff \| tree
2015-06-30	gmungoc	JAL=1759 fix Jmol state command bug; remove debug output	commit \| commitdiff \| tree
2015-06-30	gmungoc	JAL-1759 unused JmolPopup removed, code tidy for generics	commit \| commitdiff \| tree
2015-06-30	gmungoc	JAL-1759 deprecated EnfinEnvision2OneWay removed	commit \| commitdiff \| tree
2015-06-30	gmungoc	JAL-1759 JMol now Jmol !	commit \| commitdiff \| tree
2015-06-30	gmungoc	JAL-1759 unused field / methods removed	commit \| commitdiff \| tree
2015-06-30	gmungoc	JAL-1691 trackpad scrolling goes to full width even...	commit \| commitdiff \| tree
2015-06-29	gmungoc	JAL-1799 adjusted annotation height calculation	commit \| commitdiff \| tree
2015-06-29	gmungoc	JAL-1759 correct conversion of Jmol Chain.chainId ...	commit \| commitdiff \| tree
2015-06-26	gmungoc	JAL-1759 changed to non-deprecated Viewer.renderScreenImage()	commit \| commitdiff \| tree
2015-06-26	gmungoc	Merge branch 'develop' into features/JAL-1759jmolUpdate	commit \| commitdiff \| tree
2015-06-26	gmungoc	JAL-1759 updates for Jmol 14.2.14_25.06.11	commit \| commitdiff \| tree
2015-06-22	gmungoc	JAL-892 tidy Varna panel names; JAL-1789 simplified...	commit \| commitdiff \| tree
2015-06-22	gmungoc	JAL-893 upgrade to VARNAv3-93.jar	commit \| commitdiff \| tree
2015-06-19	gmungoc	JAL-892 check viewer is linked to alignment panel on...	commit \| commitdiff \| tree
2015-06-18	gmungoc	JAL-1270 test added	commit \| commitdiff \| tree
2015-06-18	gmungoc	JAL-1544 typos in comments	commit \| commitdiff \| tree
2015-06-18	gmungoc	JAL-892 JAL-1779 save/restore Varna viewer to/from...	commit \| commitdiff \| tree
2015-06-18	gmungoc	JAL-1695 default ENABLE_SPLIT_FRAME to true for desktop	commit \| commitdiff \| tree
2015-06-18	gmungoc	JAL-892 schema changes (rnaViewer) for save Varna to...	commit \| commitdiff \| tree
2015-06-18	gmungoc	JAL-1781 annotation.sequenceRef now sequence id not...	commit \| commitdiff \| tree
2015-06-17	gmungoc	JAL-1588 restore ChimeraViewFrame geometry as well	commit \| commitdiff \| tree
2015-06-17	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-06-17	gmungoc	JAL-1778 reinstated this.ssm to handle 'close all windows...	commit \| commitdiff \| tree
2015-06-15	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-06-15	gmungoc	JAL-1778 deregister as a listener when panel closed	commit \| commitdiff \| tree
2015-06-10	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-06-10	gmungoc	Merge remote-tracking branch	commit \| commitdiff \| tree
2015-06-10	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-06-10	gmungoc	JAL-1764 save Chimera/Jmol state as separate entries...	commit \| commitdiff \| tree
2015-06-08	gmungoc	JAl-1421 fix method reflection argument (properly this...	commit \| commitdiff \| tree
2015-06-08	gmungoc	JAL-1421 undid premature 'improvement' of method parameter...	commit \| commitdiff \| tree
2015-06-05	gmungoc	JAL-1752 structure highlight scoped to only its mapped...	commit \| commitdiff \| tree
2015-06-05	gmungoc	JAL-1588 error dialog if Chimera project opened on...	commit \| commitdiff \| tree
2015-06-05	gmungoc	JAL-1622 fix bug computing superposition + associated...	commit \| commitdiff \| tree
2015-06-05	gmungoc	JAL-1746 return empty string rather than null in getStateInfo	commit \| commitdiff \| tree
2015-06-05	gmungoc	JAL-1622 Chimera command timeout increased to 5 secs...	commit \| commitdiff \| tree
2015-06-05	gmungoc	JAL-1622 duplicate assignment removed (no functional...	commit \| commitdiff \| tree
2015-06-05	gmungoc	JAL-1753 JAL-1596 asynchronous command to Chimera ...	commit \| commitdiff \| tree
2015-06-05	gmungoc	JAL-1622 code tidy only, no functional change	commit \| commitdiff \| tree
2015-06-05	gmungoc	JAL-1749 correcting snafu in last commit	commit \| commitdiff \| tree
2015-06-04	gmungoc	Clear status bar message when initialisation complete	commit \| commitdiff \| tree
2015-06-04	gmungoc	JAL-1750 small tidy of AlignSeq.printMapping (+Junit)	commit \| commitdiff \| tree
2015-06-04	gmungoc	JAL-1544 spelling in javadoc only	commit \| commitdiff \| tree
2015-06-04	gmungoc	JAL-1622 code tidy (+Junit) of collateForPdb()	commit \| commitdiff \| tree
2015-06-04	gmungoc	JAL-1747 close all windows on Quit (+small bug fix)	commit \| commitdiff \| tree
2015-06-04	gmungoc	toString method added to aid viewing in the debugger	commit \| commitdiff \| tree
2015-06-04	gmungoc	JAL-1270 testToString added	commit \| commitdiff \| tree
2015-06-04	gmungoc	JAL-1750 View Mapping scoped to that viewer's mappings...	commit \| commitdiff \| tree
2015-06-04	gmungoc	JAL-1743 new Chimera menu option to 'fit to window'	commit \| commitdiff \| tree
2015-06-04	gmungoc	JAL-1743 View Chain sub-menu now being populated	commit \| commitdiff \| tree
2015-06-04	gmungoc	JAL-1753 statusPanel added (for ProgressBar); 'Fit...	commit \| commitdiff \| tree
2015-06-04	gmungoc	JAL-1753 ChimeraViewFrame hosts its own ProgressBar	commit \| commitdiff \| tree
2015-06-04	gmungoc	JAL-1742 don't offer to align another chain to the...	commit \| commitdiff \| tree
2015-06-04	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-06-04	gmungoc	JAL-1757 match only first altloc CA in PDB structure...	commit \| commitdiff \| tree
2015-06-04	gmungoc	JAL-1421 generic collections in MCView package (+unit...	commit \| commitdiff \| tree
2015-05-29	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-05-29	gmungoc	JAL-1753 declare field with interface type; check for...	commit \| commitdiff \| tree
2015-05-29	gmungoc	JAL-1753 Junit for new class	commit \| commitdiff \| tree
2015-05-29	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-05-29	gmungoc	JAL-1753 duplicated code refactored to new class ProgressBar	commit \| commitdiff \| tree
2015-05-20	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-05-20	gmungoc	JAL-1741 nucleotide-aware colour schemes applied to...	commit \| commitdiff \| tree
2015-05-20	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-05-20	gmungoc	JAL-796 JAL-1652 better implementation (key binding...	commit \| commitdiff \| tree
2015-05-18	gmungoc	JAL-1663 detect tab out of RGB value; correct field...	commit \| commitdiff \| tree
2015-05-18	gmungoc	JAL-1663 apply new colour correctly; source formatting	commit \| commitdiff \| tree
2015-05-18	gmungoc	JAL-1652 Escape key now closes Find dialog	commit \| commitdiff \| tree
2015-05-18	gmungoc	JAL-1737 updated JUnit so it creates positional annotations	commit \| commitdiff \| tree
2015-05-15	gmungoc	JAL-1270 main method converted to JUnit test	commit \| commitdiff \| tree
2015-05-15	gmungoc	JAL-1270 main method converted to JUnit test 'as seen'	commit \| commitdiff \| tree
2015-05-15	gmungoc	JAL-1270 main method converted 'as seen' to JUnit	commit \| commitdiff \| tree
2015-05-15	gmungoc	JAL-1737 ignore non-positional annotations for display	commit \| commitdiff \| tree
2015-05-15	gmungoc	JAL-1270 added test for regex actually used; include...	commit \| commitdiff \| tree
2015-05-15	gmungoc	JAL-1270 main methods converted to JUnit	commit \| commitdiff \| tree
2015-05-14	gmungoc	JAL-1727 JAL-1270 obsolete DAS registry URL updated...	commit \| commitdiff \| tree
2015-05-14	gmungoc	JAL-1270 set Cache properties in setUp to ensure test...	commit \| commitdiff \| tree
2015-05-13	gmungoc	JAL-1575 no-cache headers added to (empty) rest response	commit \| commitdiff \| tree
2015-05-13	gmungoc	JAL-1712 fixes/tests for Castor binding of EMBL XML...	commit \| commitdiff \| tree
2015-05-13	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-05-13	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-05-12	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-05-12	gmungoc	JAL-1712 fixes/tests for Castor binding and 'show flanking...	commit \| commitdiff \| tree
2015-05-07	gmungoc	JAL-1575 bare bones RestHandler added	commit \| commitdiff \| tree
2015-05-06	gmungoc	Merge branch 'Release_2_9_Branch' of https://source...	commit \| commitdiff \| tree
2015-05-06	gmungoc	JAL-1725 broadcast empty selection (to clear selection)	commit \| commitdiff \| tree
2015-05-06	gmungoc	JAL-1725 limit thread pool size; prefix /jalview to...	commit \| commitdiff \| tree
2015-05-06	gmungoc	JAL-1725 parse atomSpec with submodel; debug output...	commit \| commitdiff \| tree
2015-05-06	gmungoc	JAL-1725 fix for redirect of POST to GET, debug output...	commit \| commitdiff \| tree
2015-05-05	gmungoc	JAL-1725 jetty libraries added to classpath	commit \| commitdiff \| tree
2015-05-05	gmungoc	JAL-1725 first version of Jetty server / chimera selection...	commit \| commitdiff \| tree
2015-05-01	gmungoc	JAL-1684 hook added to test for fields ignored in copy...	commit \| commitdiff \| tree
2015-05-01	gmungoc	JAL-1690 refining 'copy format from' as applied to...	commit \| commitdiff \| tree
2015-05-01	gmungoc	JAL-1690 unused fields removed	commit \| commitdiff \| tree
2015-04-29	gmungoc	JAL-1690 preserve scaling in New View, synch id width...	commit \| commitdiff \| tree
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