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jalview.git
2019-07-08
gmungoc
JAL-3187 derived peptide variants tweaks and tests
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2019-07-05
gmungoc
JAL-3187 initial refactoring towards peptide variant...
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2019-07-05
gmungoc
JAL-1793 apply URL decoding when saving VCF attribute...
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2019-06-18
gmungoc
JAL-3187 javadoc
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2019-06-18
gmungoc
JAL-3304 option to export linked features also for...
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2019-06-18
gmungoc
JAL-3304 option to export linked features in Jalview...
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2019-06-18
gmungoc
JAL-3187 i18n show linked features checkboxes
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2019-06-18
gmungoc
JAL-3305 mirror popup menu column selections in split...
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2019-06-17
gmungoc
JAL-2792 JAL-3187 linked features (if shown) in Feature...
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2019-06-17
gmungoc
JAL-3187 update alignAs code and unit tests for 'shared...
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2019-06-17
gmungoc
JAL-3187 update unit test - protein variants not now...
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2019-06-17
gmungoc
JAL-3187 add sequence to feature details table (and...
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2019-06-14
gmungoc
JAL-3302 transfer visible 'linked' features to Chimera
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2019-06-13
gmungoc
JAL-3303 ignore deletions when computing peptide variants
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2019-06-11
gmungoc
Merge branch 'develop' into feature/JAL-3187linkedFeatures
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2019-06-11
gmungoc
JAL-3143 also parse "phase" from JSON response if present
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2019-06-11
gmungoc
Merge branch 'develop' into feature/JAL-3187linkedFeatures
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2019-06-11
gmungoc
JAL-3111 update release date placeholder
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2019-06-11
gmungoc
JAL-3288 fixes for gain/lose focus
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2019-06-11
gmungoc
JAL-3187 CDS has same dataset sequence as transcript
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2019-06-10
Ben Soares
JAL-3248 quick fix for build.gradle when pandoc not...
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2019-06-10
Ben Soares
JAL-3248 building.html now generated by pandoc 'brew...
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2019-06-10
Ben Soares
JAL-3248 added conversion of building.md to building...
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2019-06-10
Ben Soares
Merge branch 'develop' into task/JAL-3248_rewritten_bui...
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2019-06-10
Ben Soares
Merge branch 'task/JAL-3248_rewritten_building_md_instr...
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2019-06-10
Ben Soares
JAL-3248 Building from source documentation in markdown...
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2019-06-10
Ben Soares
JAL-3248 Building from source documentation in markdown...
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2019-06-07
Ben Soares
JAL-3248 Almost completed building doc
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2019-06-07
gmungoc
JAL-3187 save and restore flags for show complement...
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2019-06-07
gmungoc
JAL-3187 change fields to local variables
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2019-06-07
gmungoc
Merge branch 'develop' into feature/JAL-3187linkedFeatures
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2019-06-07
gmungoc
Merge branch 'bug/JAL-3288splitFrameMenusJava11' into...
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2019-06-07
Ben Soares
JAL-3248 a bit more
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2019-06-07
gmungoc
JAL-3187 Viewport schema attributes for showComplementF...
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2019-06-07
gmungoc
JAL-3251 added optional attributes Sequence.biotype...
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2019-06-07
gmungoc
JAL-2738 use GeneLocus extends DBRefEntry to hold chrom...
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2019-06-07
Ben Soares
Merge branch 'develop' into task/JAL-3248_rewritten_bui...
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2019-06-07
Ben Soares
JAL-3225 removing slightly misleading rewrite of .class...
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2019-06-06
Ben Soares
JAL-3225 Classpath now made in eclipse.classpath.file...
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2019-06-06
gmungoc
Merge branch 'bug/JAL-3288splitFrameMenusJava11' into...
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2019-06-06
gmungoc
JAL-3187 deletions (of Castor code) after merge from...
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2019-06-06
gmungoc
Merge branch 'develop' into trialMerge
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2019-06-06
gmungoc
JAL-3187 commit to enable merge from develop
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2019-06-05
gmungoc
JAL-3288 override JInternalFrame.setSelected() to avoid...
bug/JAL-3288splitFrameMenusJava11
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2019-06-04
Ben Soares
JAL-3287 correct local file URI for appbase and getdown...
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2019-06-04
Ben Soares
JAL-3287 adjustment to HelpLinksChecker
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2019-06-04
Ben Soares
JAL-3287 adjustment to HelpLinksChecker to run in Windo...
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2019-06-04
Ben Soares
JAL-3248 small edits
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2019-05-31
Ben Soares
JAL-3247 Adjusted Uninstall Old Jalview.app to just...
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2019-05-31
Ben Soares
JAL-3248 extra tl;dr
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2019-05-30
Ben Soares
JAL-3248 Essential tl;dr :)
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2019-05-30
Ben Soares
Merge branch 'develop' into task/JAL-3248_rewritten_bui...
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2019-05-29
gmungoc
JAL-2738 error logging if no ##reference found
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2019-05-29
gmungoc
JAL-2738 accept .csi, default to GRCh37:homo_sapiens...
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2019-05-28
Ben Soares
JAL-3277 Fixed getdown splashscreen. For unknown reason...
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2019-05-28
Ben Soares
JAL-1988 Some TEST code accidentally left in now remove...
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2019-05-28
Jalview Development...
JAL-3247 sign the AppleScript uninstaller
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2019-05-28
Ben Soares
JAL-3141 deleted TODO comment in Messages_es
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2019-05-28
Ben Soares
Merge branch 'develop' into task/JAL-3141_JAL-3247_merge
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2019-05-28
Ben Soares
JAL-3248 saving
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2019-05-27
Ben Soares
JAL-3141 Added HashMap types for Java 1.8 compatibility
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2019-05-27
Ben Soares
Merge branch 'task/JAL-3141_Customise_checkbox' into...
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2019-05-27
Ben Soares
JAL-3141 Object array cast missing
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2019-05-27
Ben Soares
Merge branch 'task/JAL-3247_JAL-3246_JAL-3254_JAL-3236_...
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2019-05-27
Ben Soares
Merge branch 'develop' into task/JAL-3247_JAL-3246_JAL...
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2019-05-27
Ben Soares
JAL-3247 Added AppleScript based App to run old Jalview...
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2019-05-27
Ben Soares
JAL-3141 Generified the JvUtils.buildComboWithTooltips...
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2019-05-27
gmungoc
JAL-3141 test file in test folder not examples
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2019-05-25
Ben Soares
JAL-3141 One more error log fix
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2019-05-25
Ben Soares
JAL-3141 Added tooltips on Schemes dropdown and Customi...
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2019-05-24
Ben Soares
JAL-3141 Fixes recommended from gmc's test
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2019-05-24
gmungoc
JAL-1988 Spanish typo corrección
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2019-05-24
Ben Soares
JAL-3141 Fixed vertical size of the example filenames...
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2019-05-24
Ben Soares
JAL-3141 Fixed tests
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2019-05-24
Ben Soares
JAL-3141 Reworked a lot of BackupFiles to allow the...
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2019-05-22
Ben Soares
Merge branch 'bug/JAL-3141_backupfiles_prefs_widget_dis...
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2019-05-22
gmungoc
JAL-3111 help file spelling correction
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2019-05-21
Ben Soares
JAL-3247 Launcher start improvements. RPM and DEB no...
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2019-05-21
gmungoc
JAL-3273 small correction to expected result calculation
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2019-05-20
Ben Soares
Merge branch 'task/JAL-3254_improved_max_memory_stack_s...
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2019-05-20
Ben Soares
JAL-3247 Unix shell installer and tar archive corrected...
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2019-05-20
Ben Soares
JAL-3254 Improved memory setting (allows mem for OS...
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2019-05-13
Jim Procter
Merge branch 'task/JAL-3247_Install4j_improvements...
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2019-05-13
Ben Soares
Merge branch 'task/JAL-3236_install4j_linux_unix_userla...
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2019-05-13
Ben Soares
JAL-3247 nogradle option on this mac build/install...
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2019-05-13
Ben Soares
JAL-3247 JAL-3254 JAL-3260 Fixed: JVL file jalview...
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2019-05-10
Jim Procter
Merge branch 'task/JAL-3246_local_getdown_files' into...
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2019-05-10
Ben Soares
JAL-3246 JAL-3247 Reworked JVL files as getdown.txt...
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2019-05-10
Jim Procter
Merge branch 'task/JAL-3236_install4j_linux_unix_userla...
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2019-05-09
Ben Soares
JAL-3236 Added unixInstaller to install4jMediaTypes...
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2019-05-09
Jim Procter
Merge branch 'task/JAL-3246_local_getdown_files' into...
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2019-05-09
Ben Soares
JAL-3247 JAL-3254 Ensure .jvp and .jvl appear first...
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2019-05-09
Ben Soares
JAL-3247 JAL-3254 Fixed file association launch behavio...
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2019-05-08
Ben Soares
JAL-3246 add -Pgetdown_local=true to use local files
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2019-05-08
Ben Soares
JAL-3247 JAL-3254 changing default location of jalview...
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2019-05-08
Ben Soares
JAL-3247 JAL-3254 Getdown now opening any files thrown...
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2019-05-08
Ben Soares
JAL-3247 JAL-3254 Automatically creating correct file...
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2019-05-08
Ben Soares
JAL-3247 JAL-3254 Automatically creating correct file...
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2019-05-08
Ben Soares
JAL-3247 Script to produce auto file association files...
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2019-05-08
Ben Soares
JAL-3247 Note in launcher.log when using a JVL file
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