JAL-3247 Script to produce auto file association files for mac and windows installer...

diff --git a/build.gradle b/build.gradle
index 2f50c3d..0088845 100644 (file)
--- a/build.gradle
+++ b/build.gradle
@@ -1,4 +1,5 @@
 import org.apache.tools.ant.filters.ReplaceTokens
+//import org.apache.tools.ant.filters.ReplaceRegexp
 import org.gradle.internal.os.OperatingSystem
 
 buildscript {
@@ -823,15 +824,37 @@ task copyInstall4jTemplate(type: Copy) {
     include install4jTemplate
     rename (install4jTemplate, install4jConfFile)
     filter(ReplaceTokens, beginToken: '', endToken: '', tokens: ['9999999999': JAVA_VERSION])
-    filter(ReplaceTokens, beginToken: '$$', endToken: '$$', tokens: ['JAVA_VERSION': JAVA_VERSION, 'JAVA_INTEGER_VERSION': JAVA_INTEGER_VERSION, 'VERSION': JALVIEW_VERSION, 'MACOS_JAVA_VM_DIR': macosJavaVMDir, 'MACOS_JAVA_VM_TGZ': macosJavaVMTgz, 'WINDOWS_JAVA_VM_DIR': windowsJavaVMDir, 'WINDOWS_JAVA_VM_TGZ': windowsJavaVMTgz])
+    filter(ReplaceTokens, beginToken: '$$', endToken: '$$',
+      tokens: [
+        'JAVA_VERSION': JAVA_VERSION,
+        'JAVA_INTEGER_VERSION': JAVA_INTEGER_VERSION,
+        'VERSION': JALVIEW_VERSION,
+        'MACOS_JAVA_VM_DIR': macosJavaVMDir,
+        'MACOS_JAVA_VM_TGZ': macosJavaVMTgz,
+        'WINDOWS_JAVA_VM_DIR': windowsJavaVMDir,
+        'WINDOWS_JAVA_VM_TGZ': windowsJavaVMTgz,
+        'INSTALL4JINFOPLISTFILEASSOCIATIONS': install4jInfoPlistFileAssociations
+      ]
+    )
     if (OSX_KEYPASS=="") {
       filter(ReplaceTokens, beginToken: 'codeSigning macEnabled="', endToken: '"', tokens: ['true':'codeSigning macEnabled="false"'])
       filter(ReplaceTokens, beginToken: 'runPostProcessor="true" ',endToken: 'Processor', tokens: ['post':'runPostProcessor="false" postProcessor'])
     }
   }
   into install4jDir
-  inputs.files("$install4jDir/$install4jTemplate")
   outputs.files(install4jConf)
+
+  doLast {
+    def installerFileAssociationsXml = file("$install4jDir/$install4jInstallerFileAssociations").text
+    ant.replaceregexp(
+      byline: false,
+      flags: "s",
+      match: '<action name="EXTENSIONS_REPLACED_BY_GRADLE".*?</action>',
+      //match: '<action.*?EXTENSIONS_REPLACED_BY_GRADLE.*?</action>',
+      replace: installerFileAssociationsXml,
+      file: install4jConf
+    )
+  }
 }
 
 task installers(type: com.install4j.gradle.Install4jTask) {

diff --git a/gradle.properties b/gradle.properties
index ce21a65..8143d44 100644 (file)
--- a/gradle.properties
+++ b/gradle.properties
@@ -96,6 +96,8 @@ j11modules = com.sun.istack.runtime,com.sun.xml.bind,com.sun.xml.fastinfoset,com
 
 install4jResourceDir = utils/install4j
 install4jTemplate = install4j_template.install4j
+install4jInfoPlistFileAssociations = file_associations_auto-Info_plist.xml
+install4jInstallerFileAssociations = file_associations_auto-install4j.xml
 install4jBuildDir = build/install4j
 install4jMediaTypes = windows,macosArchive,linuxRPM,linuxDeb,unixArchive
 OSX_KEYSTORE =

diff --git a/utils/auto_file_associations_info_plist.sh b/utils/auto_file_associations_info_plist.sh
deleted file mode 100644 (file)
index dd00e40..0000000
--- a/utils/auto_file_associations_info_plist.sh
+++ /dev/null
@@ -1 +0,0 @@
-perl -n -e 's/\s+/ /g;if(m/^ ?(\w+) ?\( ?"([^"]*)" ?, ?"([^"]*)" ?, ?(true|false) ?, ?(true|false) ?\) ?$/){$m=lc($1); $n=$2; $e=$3; @es=split(m/\s*,\s*/,$e); print "<dict>\n<key>CFBundleTypeExtensions</key>\n<array>\n";for $e (@es){print"<string>$e</string>\n";}print"</array>\n<key>CFBundleTypeName</key>\n<string>$n File</string>\n<key>CFBundleTypeIconFile</key>\n<string>Jalview-File.icns</string>\n<key>CFBundleTypeRole</key>\n<string>Editor</string>\n<key>CFBundleTypeMIMETypes</key>\n<array>\n<string>application/x-jalview-$m</string>\n</array>\n<key>LSIsAppleDefaultForType</key>\n<true/>\n</dict>\n\n";}' src/jalview/io/FileFormat.java

diff --git a/utils/install4j/auto_file_associations.pl b/utils/install4j/auto_file_associations.pl
new file mode 100755 (executable)
index 0000000..b46e274
--- /dev/null
+++ b/utils/install4j/auto_file_associations.pl
@@ -0,0 +1,81 @@
+#!/usr/bin/env perl
+
+use strict;
+
+my $fileformats = $ARGV[0];
+$fileformats = "./src/jalview/io/FileFormats.java" unless $fileformats;
+
+my $mactemplatefile = "file_associations_template-Info_plist.xml";
+my $i4jtemplatefile = "file_associations_template-install4j.xml";
+my $mactemplate;
+my $i4jtemplate;
+open(MT,"<$mactemplatefile") or dir("Could not open '$mactemplatefile' for reading");
+while(<MT>){
+  $mactemplate .= $_;
+}
+close(MT);
+open(IT,"<$i4jtemplatefile") or dir("Could not open '$i4jtemplatefile' for reading");
+while(<IT>){
+  $i4jtemplate .= $_;
+}
+close(IT);
+my $macauto;
+my $i4jauto;
+
+my $macautofile = $mactemplatefile;
+$macautofile =~ s/template/auto$1/;
+my $i4jautofile = $i4jtemplatefile;
+$i4jautofile =~ s/template/auto$1/;
+
+open(MA,">$macautofile") or die ("Could not open '$macautofile' for writing");
+print MA "<key>CFBundleDocumentTypes</key>\n<array>\n\n";
+open(IA,">$i4jautofile") or die ("Could not open '$i4jautofile' for writing");
+
+open(IN, "<$fileformats") or die ("Could not open '$fileformats' for reading");
+my $id = 10000;
+while(my $line = <IN>) {
+  $line =~ s/\s+/ /g;
+  $line =~ s/(^ | $)//g;
+  if ($line =~ m/^(\w+) ?\( ?"([^"]*)" ?, ?"([^"]*)" ?, ?(true|false) ?, ?(true|false) ?\)$/i) {
+    my $shortname = lc($1);
+    my $name = $2;
+    my $extensions = $3;
+    $extensions =~ s/\s+//g;
+    my @extensions = split(m/,/,$extensions);
+    #warn("LINE: $line\nFound extensions '".join("', '", @extensions)."' for $name Files ($shortname)'n");
+
+    my $macentry = $mactemplate;
+    my $i4jentry = $i4jtemplate;
+
+    $macentry =~ s/\$\$NAME\$\$/$name/g;
+    $macentry =~ s/\$\$SHORTNAME\$\$/$shortname/g;
+
+    $i4jentry =~ s/\$\$NAME\$\$/$name/g;
+    $i4jentry =~ s/\$\$SHORTNAME\$\$/$shortname/g;
+
+    while ($macentry =~ m/\$\$([^\$]*)EXTENSIONS([^\$]*)\$\$/) {
+      my $pre = $1;
+      my $post = $2;
+      my $macextensions;
+      for my $ext (@extensions) {
+        $macextensions .= $pre.$ext.$post;
+      }
+      $macentry =~ s/\$\$${pre}EXTENSIONS${post}\$\$/$macextensions/g;
+    }
+    print MA $macentry;
+
+    for my $ext (@extensions) {
+      my $i4jextentry = $i4jentry;
+      $i4jextentry =~ s/\$\$EXTENSION\$\$/$ext/g;
+      $i4jextentry =~ s/\$\$ID\$\$/$id/g;
+      $id++;
+
+      print IA $i4jextentry;
+    }
+
+  }
+}
+close(IN);
+close(IA);
+print MA "</array>\n";
+close(MA);

diff --git a/utils/install4j/Info_plist_file_associations-AUTO.xml b/utils/install4j/file_associations_auto-Info_plist.xml
similarity index 99%
rename from utils/install4j/Info_plist_file_associations-AUTO.xml
rename to utils/install4j/file_associations_auto-Info_plist.xml
index ce2e549..f799885 100644 (file)
--- a/utils/install4j/Info_plist_file_associations-AUTO.xml
+++ b/utils/install4j/file_associations_auto-Info_plist.xml
@@ -1,3 +1,6 @@
+<key>CFBundleDocumentTypes</key>
+<array>
+
 <dict>
 <key>CFBundleTypeExtensions</key>
 <array>
@@ -365,3 +368,4 @@
 <true/>
 </dict>
 
+</array>

diff --git a/utils/install4j/file_associations_auto-install4j.xml b/utils/install4j/file_associations_auto-install4j.xml
new file mode 100644 (file)
index 0000000..d82eff3
--- /dev/null
+++ b/utils/install4j/file_associations_auto-install4j.xml
@@ -0,0 +1,875 @@
+              <action name="" id="10000" customizedId="" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" enabled="true" commentSet="false" comment="" actionElevationType="elevated" rollbackBarrier="false" rollbackBarrierExitCode="0" multiExec="false" failureStrategy="1" errorMessage="Could not make .fa file association">
+                <serializedBean>
+                  <java class="java.beans.XMLDecoder">
+                    <object class="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction">
+                      <void property="description">
+                        <string>Fasta File</string>
+                      </void>
+                      <void property="extension">
+                        <string>fa</string>
+                      </void>
+                      <void property="launcherId">
+                        <string>737</string>
+                      </void>
+                      <void property="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.icns</string>
+                        </object>
+                      </void>
+                      <void property="macRole">
+                        <object class="java.lang.Enum" method="valueOf">
+                          <class>com.install4j.runtime.beans.actions.desktop.MacAssociationRole</class>
+                          <string>EDITOR</string>
+                        </object>
+                      </void>
+                      <void property="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.ico</string>
+                        </object>
+                      </void>
+                    </object>
+                  </java>
+                </serializedBean>
+                <condition />
+              </action>
+
+              <action name="" id="10001" customizedId="" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" enabled="true" commentSet="false" comment="" actionElevationType="elevated" rollbackBarrier="false" rollbackBarrierExitCode="0" multiExec="false" failureStrategy="1" errorMessage="Could not make .fasta file association">
+                <serializedBean>
+                  <java class="java.beans.XMLDecoder">
+                    <object class="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction">
+                      <void property="description">
+                        <string>Fasta File</string>
+                      </void>
+                      <void property="extension">
+                        <string>fasta</string>
+                      </void>
+                      <void property="launcherId">
+                        <string>737</string>
+                      </void>
+                      <void property="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.icns</string>
+                        </object>
+                      </void>
+                      <void property="macRole">
+                        <object class="java.lang.Enum" method="valueOf">
+                          <class>com.install4j.runtime.beans.actions.desktop.MacAssociationRole</class>
+                          <string>EDITOR</string>
+                        </object>
+                      </void>
+                      <void property="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.ico</string>
+                        </object>
+                      </void>
+                    </object>
+                  </java>
+                </serializedBean>
+                <condition />
+              </action>
+
+              <action name="" id="10002" customizedId="" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" enabled="true" commentSet="false" comment="" actionElevationType="elevated" rollbackBarrier="false" rollbackBarrierExitCode="0" multiExec="false" failureStrategy="1" errorMessage="Could not make .mfa file association">
+                <serializedBean>
+                  <java class="java.beans.XMLDecoder">
+                    <object class="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction">
+                      <void property="description">
+                        <string>Fasta File</string>
+                      </void>
+                      <void property="extension">
+                        <string>mfa</string>
+                      </void>
+                      <void property="launcherId">
+                        <string>737</string>
+                      </void>
+                      <void property="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.icns</string>
+                        </object>
+                      </void>
+                      <void property="macRole">
+                        <object class="java.lang.Enum" method="valueOf">
+                          <class>com.install4j.runtime.beans.actions.desktop.MacAssociationRole</class>
+                          <string>EDITOR</string>
+                        </object>
+                      </void>
+                      <void property="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.ico</string>
+                        </object>
+                      </void>
+                    </object>
+                  </java>
+                </serializedBean>
+                <condition />
+              </action>
+
+              <action name="" id="10003" customizedId="" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" enabled="true" commentSet="false" comment="" actionElevationType="elevated" rollbackBarrier="false" rollbackBarrierExitCode="0" multiExec="false" failureStrategy="1" errorMessage="Could not make .fastq file association">
+                <serializedBean>
+                  <java class="java.beans.XMLDecoder">
+                    <object class="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction">
+                      <void property="description">
+                        <string>Fasta File</string>
+                      </void>
+                      <void property="extension">
+                        <string>fastq</string>
+                      </void>
+                      <void property="launcherId">
+                        <string>737</string>
+                      </void>
+                      <void property="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.icns</string>
+                        </object>
+                      </void>
+                      <void property="macRole">
+                        <object class="java.lang.Enum" method="valueOf">
+                          <class>com.install4j.runtime.beans.actions.desktop.MacAssociationRole</class>
+                          <string>EDITOR</string>
+                        </object>
+                      </void>
+                      <void property="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.ico</string>
+                        </object>
+                      </void>
+                    </object>
+                  </java>
+                </serializedBean>
+                <condition />
+              </action>
+
+              <action name="" id="10004" customizedId="" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" enabled="true" commentSet="false" comment="" actionElevationType="elevated" rollbackBarrier="false" rollbackBarrierExitCode="0" multiExec="false" failureStrategy="1" errorMessage="Could not make .pfam file association">
+                <serializedBean>
+                  <java class="java.beans.XMLDecoder">
+                    <object class="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction">
+                      <void property="description">
+                        <string>PFAM File</string>
+                      </void>
+                      <void property="extension">
+                        <string>pfam</string>
+                      </void>
+                      <void property="launcherId">
+                        <string>737</string>
+                      </void>
+                      <void property="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.icns</string>
+                        </object>
+                      </void>
+                      <void property="macRole">
+                        <object class="java.lang.Enum" method="valueOf">
+                          <class>com.install4j.runtime.beans.actions.desktop.MacAssociationRole</class>
+                          <string>EDITOR</string>
+                        </object>
+                      </void>
+                      <void property="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.ico</string>
+                        </object>
+                      </void>
+                    </object>
+                  </java>
+                </serializedBean>
+                <condition />
+              </action>
+
+              <action name="" id="10005" customizedId="" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" enabled="true" commentSet="false" comment="" actionElevationType="elevated" rollbackBarrier="false" rollbackBarrierExitCode="0" multiExec="false" failureStrategy="1" errorMessage="Could not make .sto file association">
+                <serializedBean>
+                  <java class="java.beans.XMLDecoder">
+                    <object class="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction">
+                      <void property="description">
+                        <string>Stockholm File</string>
+                      </void>
+                      <void property="extension">
+                        <string>sto</string>
+                      </void>
+                      <void property="launcherId">
+                        <string>737</string>
+                      </void>
+                      <void property="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.icns</string>
+                        </object>
+                      </void>
+                      <void property="macRole">
+                        <object class="java.lang.Enum" method="valueOf">
+                          <class>com.install4j.runtime.beans.actions.desktop.MacAssociationRole</class>
+                          <string>EDITOR</string>
+                        </object>
+                      </void>
+                      <void property="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.ico</string>
+                        </object>
+                      </void>
+                    </object>
+                  </java>
+                </serializedBean>
+                <condition />
+              </action>
+
+              <action name="" id="10006" customizedId="" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" enabled="true" commentSet="false" comment="" actionElevationType="elevated" rollbackBarrier="false" rollbackBarrierExitCode="0" multiExec="false" failureStrategy="1" errorMessage="Could not make .stk file association">
+                <serializedBean>
+                  <java class="java.beans.XMLDecoder">
+                    <object class="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction">
+                      <void property="description">
+                        <string>Stockholm File</string>
+                      </void>
+                      <void property="extension">
+                        <string>stk</string>
+                      </void>
+                      <void property="launcherId">
+                        <string>737</string>
+                      </void>
+                      <void property="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.icns</string>
+                        </object>
+                      </void>
+                      <void property="macRole">
+                        <object class="java.lang.Enum" method="valueOf">
+                          <class>com.install4j.runtime.beans.actions.desktop.MacAssociationRole</class>
+                          <string>EDITOR</string>
+                        </object>
+                      </void>
+                      <void property="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.ico</string>
+                        </object>
+                      </void>
+                    </object>
+                  </java>
+                </serializedBean>
+                <condition />
+              </action>
+
+              <action name="" id="10007" customizedId="" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" enabled="true" commentSet="false" comment="" actionElevationType="elevated" rollbackBarrier="false" rollbackBarrierExitCode="0" multiExec="false" failureStrategy="1" errorMessage="Could not make .pir file association">
+                <serializedBean>
+                  <java class="java.beans.XMLDecoder">
+                    <object class="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction">
+                      <void property="description">
+                        <string>PIR File</string>
+                      </void>
+                      <void property="extension">
+                        <string>pir</string>
+                      </void>
+                      <void property="launcherId">
+                        <string>737</string>
+                      </void>
+                      <void property="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.icns</string>
+                        </object>
+                      </void>
+                      <void property="macRole">
+                        <object class="java.lang.Enum" method="valueOf">
+                          <class>com.install4j.runtime.beans.actions.desktop.MacAssociationRole</class>
+                          <string>EDITOR</string>
+                        </object>
+                      </void>
+                      <void property="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.ico</string>
+                        </object>
+                      </void>
+                    </object>
+                  </java>
+                </serializedBean>
+                <condition />
+              </action>
+
+              <action name="" id="10008" customizedId="" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" enabled="true" commentSet="false" comment="" actionElevationType="elevated" rollbackBarrier="false" rollbackBarrierExitCode="0" multiExec="false" failureStrategy="1" errorMessage="Could not make .BLC file association">
+                <serializedBean>
+                  <java class="java.beans.XMLDecoder">
+                    <object class="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction">
+                      <void property="description">
+                        <string>BLC File</string>
+                      </void>
+                      <void property="extension">
+                        <string>BLC</string>
+                      </void>
+                      <void property="launcherId">
+                        <string>737</string>
+                      </void>
+                      <void property="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.icns</string>
+                        </object>
+                      </void>
+                      <void property="macRole">
+                        <object class="java.lang.Enum" method="valueOf">
+                          <class>com.install4j.runtime.beans.actions.desktop.MacAssociationRole</class>
+                          <string>EDITOR</string>
+                        </object>
+                      </void>
+                      <void property="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.ico</string>
+                        </object>
+                      </void>
+                    </object>
+                  </java>
+                </serializedBean>
+                <condition />
+              </action>
+
+              <action name="" id="10009" customizedId="" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" enabled="true" commentSet="false" comment="" actionElevationType="elevated" rollbackBarrier="false" rollbackBarrierExitCode="0" multiExec="false" failureStrategy="1" errorMessage="Could not make .amsa file association">
+                <serializedBean>
+                  <java class="java.beans.XMLDecoder">
+                    <object class="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction">
+                      <void property="description">
+                        <string>AMSA File</string>
+                      </void>
+                      <void property="extension">
+                        <string>amsa</string>
+                      </void>
+                      <void property="launcherId">
+                        <string>737</string>
+                      </void>
+                      <void property="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.icns</string>
+                        </object>
+                      </void>
+                      <void property="macRole">
+                        <object class="java.lang.Enum" method="valueOf">
+                          <class>com.install4j.runtime.beans.actions.desktop.MacAssociationRole</class>
+                          <string>EDITOR</string>
+                        </object>
+                      </void>
+                      <void property="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.ico</string>
+                        </object>
+                      </void>
+                    </object>
+                  </java>
+                </serializedBean>
+                <condition />
+              </action>
+
+              <action name="" id="10010" customizedId="" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" enabled="true" commentSet="false" comment="" actionElevationType="elevated" rollbackBarrier="false" rollbackBarrierExitCode="0" multiExec="false" failureStrategy="1" errorMessage="Could not make .html file association">
+                <serializedBean>
+                  <java class="java.beans.XMLDecoder">
+                    <object class="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction">
+                      <void property="description">
+                        <string>HTML File</string>
+                      </void>
+                      <void property="extension">
+                        <string>html</string>
+                      </void>
+                      <void property="launcherId">
+                        <string>737</string>
+                      </void>
+                      <void property="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.icns</string>
+                        </object>
+                      </void>
+                      <void property="macRole">
+                        <object class="java.lang.Enum" method="valueOf">
+                          <class>com.install4j.runtime.beans.actions.desktop.MacAssociationRole</class>
+                          <string>EDITOR</string>
+                        </object>
+                      </void>
+                      <void property="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.ico</string>
+                        </object>
+                      </void>
+                    </object>
+                  </java>
+                </serializedBean>
+                <condition />
+              </action>
+
+              <action name="" id="10011" customizedId="" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" enabled="true" commentSet="false" comment="" actionElevationType="elevated" rollbackBarrier="false" rollbackBarrierExitCode="0" multiExec="false" failureStrategy="1" errorMessage="Could not make .xml file association">
+                <serializedBean>
+                  <java class="java.beans.XMLDecoder">
+                    <object class="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction">
+                      <void property="description">
+                        <string>RNAML File</string>
+                      </void>
+                      <void property="extension">
+                        <string>xml</string>
+                      </void>
+                      <void property="launcherId">
+                        <string>737</string>
+                      </void>
+                      <void property="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.icns</string>
+                        </object>
+                      </void>
+                      <void property="macRole">
+                        <object class="java.lang.Enum" method="valueOf">
+                          <class>com.install4j.runtime.beans.actions.desktop.MacAssociationRole</class>
+                          <string>EDITOR</string>
+                        </object>
+                      </void>
+                      <void property="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.ico</string>
+                        </object>
+                      </void>
+                    </object>
+                  </java>
+                </serializedBean>
+                <condition />
+              </action>
+
+              <action name="" id="10012" customizedId="" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" enabled="true" commentSet="false" comment="" actionElevationType="elevated" rollbackBarrier="false" rollbackBarrierExitCode="0" multiExec="false" failureStrategy="1" errorMessage="Could not make .rnaml file association">
+                <serializedBean>
+                  <java class="java.beans.XMLDecoder">
+                    <object class="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction">
+                      <void property="description">
+                        <string>RNAML File</string>
+                      </void>
+                      <void property="extension">
+                        <string>rnaml</string>
+                      </void>
+                      <void property="launcherId">
+                        <string>737</string>
+                      </void>
+                      <void property="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.icns</string>
+                        </object>
+                      </void>
+                      <void property="macRole">
+                        <object class="java.lang.Enum" method="valueOf">
+                          <class>com.install4j.runtime.beans.actions.desktop.MacAssociationRole</class>
+                          <string>EDITOR</string>
+                        </object>
+                      </void>
+                      <void property="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.ico</string>
+                        </object>
+                      </void>
+                    </object>
+                  </java>
+                </serializedBean>
+                <condition />
+              </action>
+
+              <action name="" id="10013" customizedId="" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" enabled="true" commentSet="false" comment="" actionElevationType="elevated" rollbackBarrier="false" rollbackBarrierExitCode="0" multiExec="false" failureStrategy="1" errorMessage="Could not make .json file association">
+                <serializedBean>
+                  <java class="java.beans.XMLDecoder">
+                    <object class="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction">
+                      <void property="description">
+                        <string>JSON File</string>
+                      </void>
+                      <void property="extension">
+                        <string>json</string>
+                      </void>
+                      <void property="launcherId">
+                        <string>737</string>
+                      </void>
+                      <void property="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.icns</string>
+                        </object>
+                      </void>
+                      <void property="macRole">
+                        <object class="java.lang.Enum" method="valueOf">
+                          <class>com.install4j.runtime.beans.actions.desktop.MacAssociationRole</class>
+                          <string>EDITOR</string>
+                        </object>
+                      </void>
+                      <void property="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.ico</string>
+                        </object>
+                      </void>
+                    </object>
+                  </java>
+                </serializedBean>
+                <condition />
+              </action>
+
+              <action name="" id="10014" customizedId="" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" enabled="true" commentSet="false" comment="" actionElevationType="elevated" rollbackBarrier="false" rollbackBarrierExitCode="0" multiExec="false" failureStrategy="1" errorMessage="Could not make .pileup file association">
+                <serializedBean>
+                  <java class="java.beans.XMLDecoder">
+                    <object class="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction">
+                      <void property="description">
+                        <string>PileUp File</string>
+                      </void>
+                      <void property="extension">
+                        <string>pileup</string>
+                      </void>
+                      <void property="launcherId">
+                        <string>737</string>
+                      </void>
+                      <void property="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.icns</string>
+                        </object>
+                      </void>
+                      <void property="macRole">
+                        <object class="java.lang.Enum" method="valueOf">
+                          <class>com.install4j.runtime.beans.actions.desktop.MacAssociationRole</class>
+                          <string>EDITOR</string>
+                        </object>
+                      </void>
+                      <void property="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.ico</string>
+                        </object>
+                      </void>
+                    </object>
+                  </java>
+                </serializedBean>
+                <condition />
+              </action>
+
+              <action name="" id="10015" customizedId="" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" enabled="true" commentSet="false" comment="" actionElevationType="elevated" rollbackBarrier="false" rollbackBarrierExitCode="0" multiExec="false" failureStrategy="1" errorMessage="Could not make .msf file association">
+                <serializedBean>
+                  <java class="java.beans.XMLDecoder">
+                    <object class="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction">
+                      <void property="description">
+                        <string>MSF File</string>
+                      </void>
+                      <void property="extension">
+                        <string>msf</string>
+                      </void>
+                      <void property="launcherId">
+                        <string>737</string>
+                      </void>
+                      <void property="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.icns</string>
+                        </object>
+                      </void>
+                      <void property="macRole">
+                        <object class="java.lang.Enum" method="valueOf">
+                          <class>com.install4j.runtime.beans.actions.desktop.MacAssociationRole</class>
+                          <string>EDITOR</string>
+                        </object>
+                      </void>
+                      <void property="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.ico</string>
+                        </object>
+                      </void>
+                    </object>
+                  </java>
+                </serializedBean>
+                <condition />
+              </action>
+
+              <action name="" id="10016" customizedId="" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" enabled="true" commentSet="false" comment="" actionElevationType="elevated" rollbackBarrier="false" rollbackBarrierExitCode="0" multiExec="false" failureStrategy="1" errorMessage="Could not make .aln file association">
+                <serializedBean>
+                  <java class="java.beans.XMLDecoder">
+                    <object class="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction">
+                      <void property="description">
+                        <string>Clustal File</string>
+                      </void>
+                      <void property="extension">
+                        <string>aln</string>
+                      </void>
+                      <void property="launcherId">
+                        <string>737</string>
+                      </void>
+                      <void property="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.icns</string>
+                        </object>
+                      </void>
+                      <void property="macRole">
+                        <object class="java.lang.Enum" method="valueOf">
+                          <class>com.install4j.runtime.beans.actions.desktop.MacAssociationRole</class>
+                          <string>EDITOR</string>
+                        </object>
+                      </void>
+                      <void property="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.ico</string>
+                        </object>
+                      </void>
+                    </object>
+                  </java>
+                </serializedBean>
+                <condition />
+              </action>
+
+              <action name="" id="10017" customizedId="" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" enabled="true" commentSet="false" comment="" actionElevationType="elevated" rollbackBarrier="false" rollbackBarrierExitCode="0" multiExec="false" failureStrategy="1" errorMessage="Could not make .phy file association">
+                <serializedBean>
+                  <java class="java.beans.XMLDecoder">
+                    <object class="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction">
+                      <void property="description">
+                        <string>PHYLIP File</string>
+                      </void>
+                      <void property="extension">
+                        <string>phy</string>
+                      </void>
+                      <void property="launcherId">
+                        <string>737</string>
+                      </void>
+                      <void property="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.icns</string>
+                        </object>
+                      </void>
+                      <void property="macRole">
+                        <object class="java.lang.Enum" method="valueOf">
+                          <class>com.install4j.runtime.beans.actions.desktop.MacAssociationRole</class>
+                          <string>EDITOR</string>
+                        </object>
+                      </void>
+                      <void property="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.ico</string>
+                        </object>
+                      </void>
+                    </object>
+                  </java>
+                </serializedBean>
+                <condition />
+              </action>
+
+              <action name="" id="10018" customizedId="" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" enabled="true" commentSet="false" comment="" actionElevationType="elevated" rollbackBarrier="false" rollbackBarrierExitCode="0" multiExec="false" failureStrategy="1" errorMessage="Could not make .gff2 file association">
+                <serializedBean>
+                  <java class="java.beans.XMLDecoder">
+                    <object class="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction">
+                      <void property="description">
+                        <string>GFF or Jalview features File</string>
+                      </void>
+                      <void property="extension">
+                        <string>gff2</string>
+                      </void>
+                      <void property="launcherId">
+                        <string>737</string>
+                      </void>
+                      <void property="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.icns</string>
+                        </object>
+                      </void>
+                      <void property="macRole">
+                        <object class="java.lang.Enum" method="valueOf">
+                          <class>com.install4j.runtime.beans.actions.desktop.MacAssociationRole</class>
+                          <string>EDITOR</string>
+                        </object>
+                      </void>
+                      <void property="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.ico</string>
+                        </object>
+                      </void>
+                    </object>
+                  </java>
+                </serializedBean>
+                <condition />
+              </action>
+
+              <action name="" id="10019" customizedId="" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" enabled="true" commentSet="false" comment="" actionElevationType="elevated" rollbackBarrier="false" rollbackBarrierExitCode="0" multiExec="false" failureStrategy="1" errorMessage="Could not make .gff3 file association">
+                <serializedBean>
+                  <java class="java.beans.XMLDecoder">
+                    <object class="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction">
+                      <void property="description">
+                        <string>GFF or Jalview features File</string>
+                      </void>
+                      <void property="extension">
+                        <string>gff3</string>
+                      </void>
+                      <void property="launcherId">
+                        <string>737</string>
+                      </void>
+                      <void property="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.icns</string>
+                        </object>
+                      </void>
+                      <void property="macRole">
+                        <object class="java.lang.Enum" method="valueOf">
+                          <class>com.install4j.runtime.beans.actions.desktop.MacAssociationRole</class>
+                          <string>EDITOR</string>
+                        </object>
+                      </void>
+                      <void property="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.ico</string>
+                        </object>
+                      </void>
+                    </object>
+                  </java>
+                </serializedBean>
+                <condition />
+              </action>
+
+              <action name="" id="10020" customizedId="" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" enabled="true" commentSet="false" comment="" actionElevationType="elevated" rollbackBarrier="false" rollbackBarrierExitCode="0" multiExec="false" failureStrategy="1" errorMessage="Could not make .pdb file association">
+                <serializedBean>
+                  <java class="java.beans.XMLDecoder">
+                    <object class="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction">
+                      <void property="description">
+                        <string>PDB File</string>
+                      </void>
+                      <void property="extension">
+                        <string>pdb</string>
+                      </void>
+                      <void property="launcherId">
+                        <string>737</string>
+                      </void>
+                      <void property="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.icns</string>
+                        </object>
+                      </void>
+                      <void property="macRole">
+                        <object class="java.lang.Enum" method="valueOf">
+                          <class>com.install4j.runtime.beans.actions.desktop.MacAssociationRole</class>
+                          <string>EDITOR</string>
+                        </object>
+                      </void>
+                      <void property="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.ico</string>
+                        </object>
+                      </void>
+                    </object>
+                  </java>
+                </serializedBean>
+                <condition />
+              </action>
+
+              <action name="" id="10021" customizedId="" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" enabled="true" commentSet="false" comment="" actionElevationType="elevated" rollbackBarrier="false" rollbackBarrierExitCode="0" multiExec="false" failureStrategy="1" errorMessage="Could not make .ent file association">
+                <serializedBean>
+                  <java class="java.beans.XMLDecoder">
+                    <object class="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction">
+                      <void property="description">
+                        <string>PDB File</string>
+                      </void>
+                      <void property="extension">
+                        <string>ent</string>
+                      </void>
+                      <void property="launcherId">
+                        <string>737</string>
+                      </void>
+                      <void property="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.icns</string>
+                        </object>
+                      </void>
+                      <void property="macRole">
+                        <object class="java.lang.Enum" method="valueOf">
+                          <class>com.install4j.runtime.beans.actions.desktop.MacAssociationRole</class>
+                          <string>EDITOR</string>
+                        </object>
+                      </void>
+                      <void property="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.ico</string>
+                        </object>
+                      </void>
+                    </object>
+                  </java>
+                </serializedBean>
+                <condition />
+              </action>
+
+              <action name="" id="10022" customizedId="" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" enabled="true" commentSet="false" comment="" actionElevationType="elevated" rollbackBarrier="false" rollbackBarrierExitCode="0" multiExec="false" failureStrategy="1" errorMessage="Could not make .cif file association">
+                <serializedBean>
+                  <java class="java.beans.XMLDecoder">
+                    <object class="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction">
+                      <void property="description">
+                        <string>mmCIF File</string>
+                      </void>
+                      <void property="extension">
+                        <string>cif</string>
+                      </void>
+                      <void property="launcherId">
+                        <string>737</string>
+                      </void>
+                      <void property="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.icns</string>
+                        </object>
+                      </void>
+                      <void property="macRole">
+                        <object class="java.lang.Enum" method="valueOf">
+                          <class>com.install4j.runtime.beans.actions.desktop.MacAssociationRole</class>
+                          <string>EDITOR</string>
+                        </object>
+                      </void>
+                      <void property="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.ico</string>
+                        </object>
+                      </void>
+                    </object>
+                  </java>
+                </serializedBean>
+                <condition />
+              </action>
+
+              <action name="" id="10023" customizedId="" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" enabled="true" commentSet="false" comment="" actionElevationType="elevated" rollbackBarrier="false" rollbackBarrierExitCode="0" multiExec="false" failureStrategy="1" errorMessage="Could not make .jvp file association">
+                <serializedBean>
+                  <java class="java.beans.XMLDecoder">
+                    <object class="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction">
+                      <void property="description">
+                        <string>Jalview File</string>
+                      </void>
+                      <void property="extension">
+                        <string>jvp</string>
+                      </void>
+                      <void property="launcherId">
+                        <string>737</string>
+                      </void>
+                      <void property="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.icns</string>
+                        </object>
+                      </void>
+                      <void property="macRole">
+                        <object class="java.lang.Enum" method="valueOf">
+                          <class>com.install4j.runtime.beans.actions.desktop.MacAssociationRole</class>
+                          <string>EDITOR</string>
+                        </object>
+                      </void>
+                      <void property="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.ico</string>
+                        </object>
+                      </void>
+                    </object>
+                  </java>
+                </serializedBean>
+                <condition />
+              </action>
+
+              <action name="" id="10024" customizedId="" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" enabled="true" commentSet="false" comment="" actionElevationType="elevated" rollbackBarrier="false" rollbackBarrierExitCode="0" multiExec="false" failureStrategy="1" errorMessage="Could not make .jar file association">
+                <serializedBean>
+                  <java class="java.beans.XMLDecoder">
+                    <object class="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction">
+                      <void property="description">
+                        <string>Jalview File</string>
+                      </void>
+                      <void property="extension">
+                        <string>jar</string>
+                      </void>
+                      <void property="launcherId">
+                        <string>737</string>
+                      </void>
+                      <void property="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.icns</string>
+                        </object>
+                      </void>
+                      <void property="macRole">
+                        <object class="java.lang.Enum" method="valueOf">
+                          <class>com.install4j.runtime.beans.actions.desktop.MacAssociationRole</class>
+                          <string>EDITOR</string>
+                        </object>
+                      </void>
+                      <void property="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.ico</string>
+                        </object>
+                      </void>
+                    </object>
+                  </java>
+                </serializedBean>
+                <condition />
+              </action>
+

diff --git a/utils/install4j/file_associations_template-Info_plist.xml b/utils/install4j/file_associations_template-Info_plist.xml
new file mode 100644 (file)
index 0000000..66720a1
--- /dev/null
+++ b/utils/install4j/file_associations_template-Info_plist.xml
@@ -0,0 +1,19 @@
+<dict>
+<key>CFBundleTypeExtensions</key>
+<array>
+$$<string>EXTENSIONS</string>
+$$</array>
+<key>CFBundleTypeName</key>
+<string>$$NAME$$ File</string>
+<key>CFBundleTypeIconFile</key>
+<string>Jalview-File.icns</string>
+<key>CFBundleTypeRole</key>
+<string>Editor</string>
+<key>CFBundleTypeMIMETypes</key>
+<array>
+<string>application/x-jalview-$$SHORTNAME$$</string>
+</array>
+<key>LSIsAppleDefaultForType</key>
+<true/>
+</dict>
+

diff --git a/utils/install4j/file_associations_template-install4j.xml b/utils/install4j/file_associations_template-install4j.xml
new file mode 100644 (file)
index 0000000..96eff1e
--- /dev/null
+++ b/utils/install4j/file_associations_template-install4j.xml
@@ -0,0 +1,35 @@
+              <action name="" id="$$ID$$" customizedId="" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" enabled="true" commentSet="false" comment="" actionElevationType="elevated" rollbackBarrier="false" rollbackBarrierExitCode="0" multiExec="false" failureStrategy="1" errorMessage="Could not make .$$EXTENSION$$ file association">
+                <serializedBean>
+                  <java class="java.beans.XMLDecoder">
+                    <object class="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction">
+                      <void property="description">
+                        <string>$$NAME$$ File</string>
+                      </void>
+                      <void property="extension">
+                        <string>$$EXTENSION$$</string>
+                      </void>
+                      <void property="launcherId">
+                        <string>737</string>
+                      </void>
+                      <void property="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.icns</string>
+                        </object>
+                      </void>
+                      <void property="macRole">
+                        <object class="java.lang.Enum" method="valueOf">
+                          <class>com.install4j.runtime.beans.actions.desktop.MacAssociationRole</class>
+                          <string>EDITOR</string>
+                        </object>
+                      </void>
+                      <void property="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>./Jalview-File.ico</string>
+                        </object>
+                      </void>
+                    </object>
+                  </java>
+                </serializedBean>
+                <condition />
+              </action>
+

diff --git a/utils/install4j/install4j_template.install4j b/utils/install4j/install4j_template.install4j
index 176a72c..774539e 100644 (file)
--- a/utils/install4j/install4j_template.install4j
+++ b/utils/install4j/install4j_template.install4j
@@ -109,7 +109,7 @@
       <customScript mode="1" file="">
         <content />
       </customScript>
-      <infoPlist mode="2" file="./Info_plist_file_associations.xml">
+      <infoPlist mode="2" file="$$INSTALL4JINFOPLISTFILEASSOCIATIONS$$">
         <content />
       </infoPlist>
       <iconImageFiles>
@@ -142,7 +142,7 @@
       <customScript mode="1" file="">
         <content />
       </customScript>
-      <infoPlist mode="2" file="./Info_plist_file_associations.xml">
+      <infoPlist mode="2" file="$$INSTALL4JINFOPLISTFILEASSOCIATIONS$$">
         <content />
       </infoPlist>
       <iconImageFiles>
@@ -546,6 +546,52 @@ return console.askOkCancel(message, true);
               </formComponent>
             </formComponents>
           </screen>
+          <screen name="" id="1692" customizedId="" beanClass="com.install4j.runtime.beans.screens.FileAssociationsScreen" enabled="true" commentSet="false" comment="" actionElevationType="inherit" styleId="" rollbackBarrier="false" rollbackBarrierExitCode="0" backButton="2" finishScreen="false" wizardIndexChangeType="unchanged" wizardIndexKey="">
+            <serializedBean>
+              <java class="java.beans.XMLDecoder">
+                <object class="com.install4j.runtime.beans.screens.FileAssociationsScreen" />
+              </java>
+            </serializedBean>
+            <styleOverrides />
+            <condition />
+            <validation />
+            <preActivation />
+            <postActivation />
+            <actions />
+            <formComponents>
+              <formComponent name="" id="1693" customizedId="" beanClass="com.install4j.runtime.beans.formcomponents.MultilineLabelComponent" enabled="true" commentSet="false" comment="" insetTop="" insetLeft="" insetBottom="" insetRight="" resetInitOnPrevious="false" useExternalParametrization="false" externalParametrizationName="" externalParametrizationMode="all">
+                <serializedBean>
+                  <java class="java.beans.XMLDecoder">
+                    <object class="com.install4j.runtime.beans.formcomponents.MultilineLabelComponent">
+                      <void property="labelText">
+                        <string>${i18n:SelectAssociationsLabel}</string>
+                      </void>
+                    </object>
+                  </java>
+                </serializedBean>
+                <initScript />
+                <visibilityScript />
+                <externalParametrizationPropertyNames />
+              </formComponent>
+              <formComponent name="" id="1694" customizedId="" beanClass="com.install4j.runtime.beans.formcomponents.FileAssociationsComponent" enabled="true" commentSet="false" comment="" insetTop="" insetLeft="" insetBottom="" insetRight="" resetInitOnPrevious="false" useExternalParametrization="true" externalParametrizationName="File Associations" externalParametrizationMode="include">
+                <serializedBean>
+                  <java class="java.beans.XMLDecoder">
+                    <object class="com.install4j.runtime.beans.formcomponents.FileAssociationsComponent">
+                      <void property="fillVertical">
+                        <boolean>true</boolean>
+                      </void>
+                    </object>
+                  </java>
+                </serializedBean>
+                <initScript />
+                <visibilityScript />
+                <externalParametrizationPropertyNames>
+                  <propertyName>showSelectionButtons</propertyName>
+                  <propertyName>selectionButtonPosition</propertyName>
+                </externalParametrizationPropertyNames>
+              </formComponent>
+            </formComponents>
+          </screen>
           <screen name="" id="15" customizedId="" beanClass="com.install4j.runtime.beans.screens.InstallationScreen" enabled="true" commentSet="false" comment="" actionElevationType="inherit" styleId="" rollbackBarrier="true" rollbackBarrierExitCode="0" backButton="2" finishScreen="false" wizardIndexChangeType="unchanged" wizardIndexKey="">
             <serializedBean>
               <java class="java.beans.XMLDecoder">
@@ -696,33 +742,27 @@ return console.askOkCancel(message, true);
                 </serializedBean>
                 <condition>context.getBooleanVariable("addToDockAction")</condition>
               </action>
-              <action name="" id="578" customizedId="" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" enabled="true" commentSet="false" comment="" actionElevationType="elevated" rollbackBarrier="false" rollbackBarrierExitCode="0" multiExec="false" failureStrategy="1" errorMessage="Could not make .jvp file association">
+              <action name="" id="1604" customizedId="" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" enabled="true" commentSet="false" comment="" actionElevationType="elevated" rollbackBarrier="false" rollbackBarrierExitCode="0" multiExec="false" failureStrategy="1" errorMessage="Could not make .jvl file association">
                 <serializedBean>
                   <java class="java.beans.XMLDecoder">
                     <object class="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction">
                       <void property="description">
-                        <string>Jalview Project File</string>
+                        <string>Jalview Version Locator</string>
                       </void>
                       <void property="extension">
-                        <string>jvp</string>
+                        <string>jvl</string>
                       </void>
                       <void property="launcherId">
                         <string>737</string>
                       </void>
                       <void property="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
-                          <string>./Jalview-File.icns</string>
-                        </object>
-                      </void>
-                      <void property="macRole">
-                        <object class="java.lang.Enum" method="valueOf">
-                          <class>com.install4j.runtime.beans.actions.desktop.MacAssociationRole</class>
-                          <string>EDITOR</string>
+                          <string>./Jalview-Version-Locator.icns</string>
                         </object>
                       </void>
                       <void property="windowsIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
-                          <string>./Jalview-File.ico</string>
+                          <string>./Jalview-Version-Locator.ico</string>
                         </object>
                       </void>
                     </object>
@@ -730,28 +770,15 @@ return console.askOkCancel(message, true);
                 </serializedBean>
                 <condition />
               </action>
-              <action name="" id="1604" customizedId="" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" enabled="true" commentSet="false" comment="" actionElevationType="elevated" rollbackBarrier="false" rollbackBarrierExitCode="0" multiExec="false" failureStrategy="1" errorMessage="Could not make .jvl file association">
+              <action name="EXTENSIONS_REPLACED_BY_GRADLE" id="1691" customizedId="EXTENSIONS" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" enabled="true" commentSet="false" comment="" actionElevationType="elevated" rollbackBarrier="false" rollbackBarrierExitCode="0" multiExec="false" failureStrategy="1" errorMessage="">
                 <serializedBean>
                   <java class="java.beans.XMLDecoder">
                     <object class="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction">
                       <void property="description">
-                        <string>Jalview Version Locator</string>
+                        <string>EXTENSIONS_REPLACED_BY_GRADLE</string>
                       </void>
                       <void property="extension">
-                        <string>jvl</string>
-                      </void>
-                      <void property="launcherId">
-                        <string>737</string>
-                      </void>
-                      <void property="macIconFile">
-                        <object class="com.install4j.api.beans.ExternalFile">
-                          <string>./Jalview-Version-Locator.icns</string>
-                        </object>
-                      </void>
-                      <void property="windowsIconFile">
-                        <object class="com.install4j.api.beans.ExternalFile">
-                          <string>./Jalview-Version-Locator.ico</string>
-                        </object>
+                        <string>EXTENSION</string>
                       </void>
                     </object>
                   </java>