Merge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch
[jalview.git] / src / jalview / datamodel /
drwxr-xr-x   ..
-rw-r--r-- 111 .cvsignore
-rw-r--r-- 8220 AlignedCodonFrame.java
-rwxr-xr-x 32546 Alignment.java
-rwxr-xr-x 28621 AlignmentAnnotation.java
-rwxr-xr-x 13185 AlignmentI.java
-rwxr-xr-x 7170 AlignmentOrder.java
-rw-r--r-- 35508 AlignmentView.java
-rw-r--r-- 1388 AnnotatedCollectionI.java
-rwxr-xr-x 4601 Annotation.java
-rwxr-xr-x 5325 BinaryNode.java
-rwxr-xr-x 4481 BinarySequence.java
-rw-r--r-- 10888 CigarArray.java
-rw-r--r-- 19193 CigarBase.java
-rw-r--r-- 1681 CigarCigar.java
-rw-r--r-- 1156 CigarSimple.java
-rw-r--r-- 29988 ColumnSelection.java
-rwxr-xr-x 4333 DBRefEntry.java
-rwxr-xr-x 3447 DBRefSource.java
-rw-r--r-- 1570 FeatureProperties.java
-rwxr-xr-x 1992 GraphLine.java
-rwxr-xr-x 6529 HiddenSequences.java
-rw-r--r-- 10438 Mapping.java
-rw-r--r-- 983 NodeTransformI.java
-rwxr-xr-x 2511 PDBEntry.java
-rwxr-xr-x 1405 Provenance.java
-rwxr-xr-x 1315 ProvenanceEntry.java
-rwxr-xr-x 4780 SearchResults.java
-rw-r--r-- 643 SecondaryStructureAnnotation.java
-rw-r--r-- 22484 SeqCigar.java
-rwxr-xr-x 27017 Sequence.java
-rw-r--r-- 1336 SequenceCollectionI.java
-rwxr-xr-x 5880 SequenceFeature.java
-rwxr-xr-x 28223 SequenceGroup.java
-rwxr-xr-x 9075 SequenceI.java
-rwxr-xr-x 4019 SequenceNode.java
-rwxr-xr-x 1461 SequencePoint.java
-rwxr-xr-x 1885 UniprotEntry.java
-rwxr-xr-x 1083 UniprotFile.java
-rwxr-xr-x 1132 UniprotProteinName.java
-rwxr-xr-x 1309 UniprotSequence.java
drwxr-xr-x - xdb