Merge branch 'develop' into Release_2_9_0b1_Branch
[jalview.git] / src / jalview / datamodel /
drwxr-xr-x   ..
-rw-r--r-- 111 .cvsignore
-rwxr-xr-x 1063 ASequence.java
-rwxr-xr-x 1027 ASequenceI.java
-rw-r--r-- 2967 AlignedCodon.java
-rw-r--r-- 11722 AlignedCodonFrame.java
-rwxr-xr-x 38658 Alignment.java
-rwxr-xr-x 37287 AlignmentAnnotation.java
-rw-r--r-- 1974 AlignmentExportData.java
-rwxr-xr-x 14124 AlignmentI.java
-rwxr-xr-x 7238 AlignmentOrder.java
-rw-r--r-- 36565 AlignmentView.java
-rw-r--r-- 1515 AnnotatedCollectionI.java
-rwxr-xr-x 4627 Annotation.java
-rwxr-xr-x 5329 BinaryNode.java
-rwxr-xr-x 4537 BinarySequence.java
-rw-r--r-- 11102 CigarArray.java
-rw-r--r-- 19865 CigarBase.java
-rw-r--r-- 1685 CigarCigar.java
-rw-r--r-- 1160 CigarSimple.java
-rw-r--r-- 33585 ColumnSelection.java
-rwxr-xr-x 4602 DBRefEntry.java
-rwxr-xr-x 3615 DBRefSource.java
-rw-r--r-- 2117 FeatureProperties.java
-rwxr-xr-x 1999 GraphLine.java
-rwxr-xr-x 6938 HiddenSequences.java
-rw-r--r-- 1095 IncompleteCodonException.java
-rw-r--r-- 16242 Mapping.java
-rw-r--r-- 987 NodeTransformI.java
-rwxr-xr-x 3564 PDBEntry.java
-rwxr-xr-x 1414 Provenance.java
-rwxr-xr-x 1319 ProvenanceEntry.java
-rw-r--r-- 1665 RnaViewerModel.java
-rwxr-xr-x 8891 SearchResults.java
-rw-r--r-- 1490 SecondaryStructureAnnotation.java
-rw-r--r-- 18002 SeqCigar.java
-rwxr-xr-x 29299 Sequence.java
-rw-r--r-- 1802 SequenceCollectionI.java
-rw-r--r-- 1534 SequenceDummy.java
-rwxr-xr-x 6235 SequenceFeature.java
-rwxr-xr-x 29659 SequenceGroup.java
-rwxr-xr-x 10899 SequenceI.java
-rwxr-xr-x 4027 SequenceNode.java
-rwxr-xr-x 1465 SequencePoint.java
-rw-r--r-- 4389 StructureViewerModel.java
-rwxr-xr-x 2120 UniprotEntry.java
-rwxr-xr-x 1258 UniprotFile.java
-rwxr-xr-x 1324 UniprotProteinName.java
-rwxr-xr-x 1519 UniprotSequence.java
drwxr-xr-x - xdb