JAL-1712 fixes/tests for Castor binding and 'show flanking regions' bug/JAL-1712annotationsWithFlanking
[jalview.git] / src / jalview / datamodel /
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-rw-r--r-- 111 .cvsignore
-rw-r--r-- 8242 AlignedCodonFrame.java
-rwxr-xr-x 34212 Alignment.java
-rwxr-xr-x 35667 AlignmentAnnotation.java
-rwxr-xr-x 13257 AlignmentI.java
-rwxr-xr-x 7178 AlignmentOrder.java
-rw-r--r-- 35596 AlignmentView.java
-rw-r--r-- 1519 AnnotatedCollectionI.java
-rwxr-xr-x 4606 Annotation.java
-rwxr-xr-x 5333 BinaryNode.java
-rwxr-xr-x 4489 BinarySequence.java
-rw-r--r-- 10896 CigarArray.java
-rw-r--r-- 19522 CigarBase.java
-rw-r--r-- 1689 CigarCigar.java
-rw-r--r-- 1164 CigarSimple.java
-rw-r--r-- 30111 ColumnSelection.java
-rwxr-xr-x 4341 DBRefEntry.java
-rwxr-xr-x 3455 DBRefSource.java
-rw-r--r-- 1578 FeatureProperties.java
-rwxr-xr-x 2003 GraphLine.java
-rwxr-xr-x 6618 HiddenSequences.java
-rw-r--r-- 10446 Mapping.java
-rw-r--r-- 991 NodeTransformI.java
-rwxr-xr-x 3663 PDBEntry.java
-rwxr-xr-x 1413 Provenance.java
-rwxr-xr-x 1323 ProvenanceEntry.java
-rwxr-xr-x 4788 SearchResults.java
-rw-r--r-- 1494 SecondaryStructureAnnotation.java
-rw-r--r-- 22743 SeqCigar.java
-rwxr-xr-x 27855 Sequence.java
-rw-r--r-- 1342 SequenceCollectionI.java
-rwxr-xr-x 5888 SequenceFeature.java
-rwxr-xr-x 29608 SequenceGroup.java
-rwxr-xr-x 9956 SequenceI.java
-rwxr-xr-x 4027 SequenceNode.java
-rwxr-xr-x 1469 SequencePoint.java
-rwxr-xr-x 2124 UniprotEntry.java
-rwxr-xr-x 1262 UniprotFile.java
-rwxr-xr-x 1328 UniprotProteinName.java
-rwxr-xr-x 1523 UniprotSequence.java
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