updated to jalview 2.1 and begun ArchiveClient/VamsasClient/VamsasStore updates.
[jalview.git] / src / jalview / datamodel /
drwxr-xr-x   ..
-rw-r--r-- 111 .cvsignore
-rwxr-xr-x 19623 Alignment.java
-rwxr-xr-x 8122 AlignmentAnnotation.java
-rwxr-xr-x 7167 AlignmentI.java
-rwxr-xr-x 7227 AlignmentOrder.java
-rw-r--r-- 13849 AlignmentView.java
-rwxr-xr-x 2196 Annotation.java
-rwxr-xr-x 5798 BinaryNode.java
-rwxr-xr-x 3694 BinarySequence.java
-rw-r--r-- 6783 CigarArray.java
-rw-r--r-- 19760 CigarBase.java
-rw-r--r-- 1616 CigarCigar.java
-rw-r--r-- 1337 CigarSimple.java
-rw-r--r-- 18220 ColumnSelection.java
-rwxr-xr-x 1287 DBRefEntry.java
-rwxr-xr-x 1390 DBRefSource.java
-rwxr-xr-x 1252 GraphLine.java
-rwxr-xr-x 4514 HiddenSequences.java
-rwxr-xr-x 4874 HistoryItem.java
-rwxr-xr-x 1486 PDBEntry.java
-rwxr-xr-x 1383 Provenance.java
-rwxr-xr-x 1304 ProvenanceEntry.java
-rwxr-xr-x 3374 SearchResults.java
-rw-r--r-- 19506 SeqCigar.java
-rwxr-xr-x 16299 Sequence.java
-rwxr-xr-x 5030 SequenceFeature.java
-rwxr-xr-x 13084 SequenceGroup.java
-rwxr-xr-x 5637 SequenceI.java
-rwxr-xr-x 3610 SequenceNode.java
-rwxr-xr-x 1270 SequencePoint.java
-rwxr-xr-x 1906 UniprotEntry.java
-rwxr-xr-x 1099 UniprotFile.java
-rwxr-xr-x 1179 UniprotProteinName.java
-rwxr-xr-x 1292 UniprotSequence.java