WEB-INF/web.xml

   1 <web-app xmlns="http://java.sun.com/xml/ns/j2ee"\r
   2     xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"\r
   3     xsi:schemaLocation="http://java.sun.com/xml/ns/j2ee http://java.sun.com/xml/ns/j2ee/web-app_2_4.xsd"\r
   4     version="2.4">\r
   5 \r
   6     <display-name>JABAWS</display-name>\r
   7     <description>JAva Bioinformatics Analysis Web Services (JABAWS) v.2</description>\r
   8 \r
   9         <listener>\r
  10                 <listener-class>compbio.ws.server.ShutdownEngines</listener-class>\r
  11         </listener>\r
  12     <listener>\r
  13         <listener-class>compbio.stat.servlet.StatisticCollector</listener-class>\r
  14      </listener>\r
  15     <listener>\r
  16         <listener-class>com.sun.xml.ws.transport.http.servlet.WSServletContextListener</listener-class>\r
  17     </listener>\r
  18     \r
  19         <!-- Session timeout in minutes -->\r
  20         <session-config>\r
  21                 <session-timeout>20</session-timeout>\r
  22     </session-config>\r
  23  \r
  24      <servlet>\r
  25         <display-name>This is a standard tomcat 'default' servlet for making listings</display-name>\r
  26         <servlet-name>listings</servlet-name>\r
  27         <servlet-class>org.apache.catalina.servlets.DefaultServlet</servlet-class>\r
  28         <init-param>\r
  29             <param-name>debug</param-name>\r
  30             <param-value>0</param-value>\r
  31         </init-param>\r
  32         <init-param>\r
  33             <param-name>readonly</param-name>\r
  34             <param-value>true</param-value>\r
  35         </init-param>\r
  36         <init-param>\r
  37             <param-name>listings</param-name>\r
  38             <param-value>true</param-value>\r
  39         </init-param>\r
  40         <load-on-startup>1</load-on-startup>\r
  41     </servlet>\r
  42 \r
  43     <servlet>\r
  44         <description>Display pre-calculated accounting info</description>\r
  45         <servlet-name>DisplayStat</servlet-name>\r
  46         <servlet-class>compbio.stat.servlet.DisplayStat</servlet-class>\r
  47     </servlet>\r
  48   \r
  49     <servlet>\r
  50         <description>Display job list</description>\r
  51         <servlet-name>Joblist</servlet-name>\r
  52         <servlet-class>compbio.stat.servlet.Joblist</servlet-class>\r
  53     </servlet>\r
  54     \r
  55     <servlet>\r
  56         <description>Display monthly summary statistics</description>\r
  57         <servlet-name>AnnualStat</servlet-name>\r
  58         <servlet-class>compbio.stat.servlet.AnnualStat</servlet-class>\r
  59     </servlet>\r
  60     \r
  61      <servlet>\r
  62         <description>Display monthly summary statistics with no links to details</description>\r
  63         <servlet-name>PublicAnnualStat</servlet-name>\r
  64         <servlet-class>compbio.stat.servlet.AnnualStat</servlet-class>\r
  65     </servlet>\r
  66     \r
  67     <servlet>\r
  68         <servlet-name>RegistryWS</servlet-name>\r
  69         <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
  70         <load-on-startup>1</load-on-startup>\r
  71     </servlet>\r
  72     \r
  73     <servlet>\r
  74         <servlet-name>ClustalWS</servlet-name>\r
  75         <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
  76         <load-on-startup>1</load-on-startup>\r
  77     </servlet>\r
  78     \r
  79     <servlet>\r
  80         <servlet-name>MuscleWS</servlet-name>\r
  81         <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
  82         <load-on-startup>1</load-on-startup>\r
  83     </servlet>\r
  84     \r
  85     <servlet>\r
  86         <servlet-name>MafftWS</servlet-name>\r
  87         <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
  88         <load-on-startup>1</load-on-startup>\r
  89     </servlet>\r
  90     \r
  91     <servlet>\r
  92         <servlet-name>TcoffeeWS</servlet-name>\r
  93         <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
  94         <load-on-startup>1</load-on-startup>\r
  95     </servlet>\r
  96      \r
  97     <servlet>\r
  98         <servlet-name>ProbconsWS</servlet-name>\r
  99         <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
 100         <load-on-startup>1</load-on-startup>\r
 101     </servlet>\r
 102     \r
 103      <servlet>\r
 104         <servlet-name>AAConWS</servlet-name>\r
 105         <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
 106         <load-on-startup>1</load-on-startup>\r
 107     </servlet>\r
 108    \r
 109      <servlet>\r
 110         <servlet-name>JronnWS</servlet-name>\r
 111         <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
 112         <load-on-startup>1</load-on-startup>\r
 113     </servlet>\r
 114 \r
 115      <servlet>\r
 116         <servlet-name>DisemblWS</servlet-name>\r
 117         <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
 118                 <load-on-startup>1</load-on-startup>\r
 119     </servlet>\r
 120     \r
 121     <servlet>\r
 122         <servlet-name>GlobPlotWS</servlet-name>\r
 123         <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
 124         <load-on-startup>1</load-on-startup>\r
 125     </servlet>\r
 126     \r
 127      <servlet>\r
 128         <servlet-name>IUPredWS</servlet-name>\r
 129         <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
 130         <load-on-startup>1</load-on-startup>\r
 131     </servlet>\r
 132    \r
 133     <servlet-mapping>\r
 134         <servlet-name>listings</servlet-name>\r
 135         <url-pattern>/</url-pattern>\r
 136         </servlet-mapping>\r
 137              \r
 138     <servlet-mapping>\r
 139         <servlet-name>DisplayStat</servlet-name>\r
 140         <url-pattern>/DisplayStat</url-pattern>\r
 141         </servlet-mapping>\r
 142         \r
 143          <servlet-mapping>\r
 144         <servlet-name>AnnualStat</servlet-name>\r
 145         <url-pattern>/AnnualStat</url-pattern>\r
 146         </servlet-mapping>  \r
 147     \r
 148      <servlet-mapping>\r
 149         <servlet-name>PublicAnnualStat</servlet-name>\r
 150         <url-pattern>/PublicAnnualStat</url-pattern>\r
 151         </servlet-mapping>  \r
 152     \r
 153     \r
 154     <servlet-mapping>\r
 155         <servlet-name>Joblist</servlet-name>\r
 156         <url-pattern>/Joblist</url-pattern>\r
 157         </servlet-mapping> \r
 158         \r
 159     <servlet-mapping>\r
 160         <servlet-name>RegistryWS</servlet-name>\r
 161         <url-pattern>/RegistryWS</url-pattern>\r
 162     </servlet-mapping>\r
 163     \r
 164     <servlet-mapping>\r
 165         <servlet-name>ClustalWS</servlet-name>\r
 166         <url-pattern>/ClustalWS</url-pattern>\r
 167     </servlet-mapping>\r
 168     \r
 169     <servlet-mapping>\r
 170         <servlet-name>MuscleWS</servlet-name>\r
 171         <url-pattern>/MuscleWS</url-pattern>\r
 172     </servlet-mapping>\r
 173 \r
 174    <servlet-mapping>\r
 175         <servlet-name>MafftWS</servlet-name>\r
 176         <url-pattern>/MafftWS</url-pattern>\r
 177     </servlet-mapping>\r
 178     \r
 179    <servlet-mapping>\r
 180         <servlet-name>TcoffeeWS</servlet-name>\r
 181         <url-pattern>/TcoffeeWS</url-pattern>\r
 182    </servlet-mapping>\r
 183 \r
 184    <servlet-mapping>\r
 185         <servlet-name>ProbconsWS</servlet-name>\r
 186         <url-pattern>/ProbconsWS</url-pattern>\r
 187    </servlet-mapping>\r
 188  \r
 189    <servlet-mapping>\r
 190         <servlet-name>AAConWS</servlet-name>\r
 191         <url-pattern>/AAConWS</url-pattern>\r
 192    </servlet-mapping>\r
 193    \r
 194     <servlet-mapping>\r
 195         <servlet-name>JronnWS</servlet-name>\r
 196         <url-pattern>/JronnWS</url-pattern>\r
 197    </servlet-mapping>\r
 198    \r
 199    <servlet-mapping>\r
 200         <servlet-name>DisemblWS</servlet-name>\r
 201         <url-pattern>/DisemblWS</url-pattern>\r
 202    </servlet-mapping>\r
 203    \r
 204    <servlet-mapping>\r
 205         <servlet-name>GlobPlotWS</servlet-name>\r
 206         <url-pattern>/GlobPlotWS</url-pattern>\r
 207    </servlet-mapping>\r
 208    \r
 209     <servlet-mapping>\r
 210         <servlet-name>IUPredWS</servlet-name>\r
 211         <url-pattern>/IUPredWS</url-pattern>\r
 212    </servlet-mapping>\r
 213    \r
 214    <security-constraint>\r
 215     <web-resource-collection>\r
 216         <web-resource-name>Administrator pages</web-resource-name>\r
 217                 <!-- Prohibit access to any resources -->\r
 218         <url-pattern>/</url-pattern>\r
 219         <url-pattern>/DisplayStat</url-pattern>\r
 220         <url-pattern>/Joblist</url-pattern>\r
 221         <url-pattern>/AnnualStat</url-pattern>\r
 222         <url-pattern>/conf/*</url-pattern>\r
 223                 <url-pattern>/binaries/*</url-pattern>\r
 224                 <url-pattern>/jobsout/*</url-pattern>\r
 225                 <url-pattern>/testsrc/*</url-pattern>\r
 226                 <url-pattern>/lib/*</url-pattern>\r
 227                 <url-pattern>/test-output/*</url-pattern>\r
 228         <!-- No http-method means all methods are constrained -->\r
 229     </web-resource-collection>\r
 230     <auth-constraint>\r
 231       <role-name>admin</role-name>\r
 232     </auth-constraint>\r
 233    </security-constraint>\r
 234 \r
 235   <!-- unsupported HTTP methods -->\r
 236   <security-constraint>\r
 237         <web-resource-collection>\r
 238         <web-resource-name>unsupported HTTP methods</web-resource-name>\r
 239         <url-pattern>/*</url-pattern>\r
 240             <http-method>PUT</http-method>\r
 241             <http-method>DELETE</http-method>\r
 242             <http-method>TRACE</http-method>\r
 243             <http-method>HEAD</http-method>\r
 244             <http-method>OPTIONS</http-method>\r
 245         </web-resource-collection>\r
 246         <auth-constraint/>\r
 247   </security-constraint>\r
 248       <!-- Define the Login Configuration for this Application -->\r
 249   <login-config>\r
 250          <auth-method>BASIC</auth-method>\r
 251          <realm-name>JABAWS administrators</realm-name>\r
 252   </login-config>\r
 253   \r
 254     <!-- Security roles referenced by this web application -->\r
 255   <security-role>\r
 256     <description>\r
 257       The role that is required to log in and view JABAWS internals\r
 258     </description>\r
 259     <role-name>admin</role-name>\r
 260   </security-role>\r
 261   \r
 262 </web-app>