binaries/linuxIA32/fasta34/Makefile.nm_pcom

   1
   2 SHOWBESTC = mshowbest.c
   3 SHOWALIGN = mshowalign
   4 MWH = mw.h
   5 MWHP = mw.h
   6
   7 TPROGS = ssearch34_t.exe ssearch34sse2_t.exe fasta34_t.exe fasts34_t.exe fastx34_t.exe tfastx34_t.exe fasty34_t.exe tfasty34_t.exe tfasts34_t.exe fastm34_t.exe fastf34_t.exe tfastf34_t.exe prss34_t.exe prss34sse2_t.exe prfx34_t.exe
   8
   9 SPROGS = fasta34.exe ssearch34.exe ssearch34sse2.exe fasts34.exe fastx34.exe tfastx34.exe fasty34.exe tfasty34.exe tfasts34.exe fastm34.exe tfastm34.exe prss34.exe prss34sse2.exe prfx34.exe fastf34.exe tfastf34.exe
  10
  11 MAPROGS = map_db.exe
  12
  13 XTPROGS = fastx34_t.exe tfastx34_t.exe fasty34_t.exe tfasty34_t.exe
  14 XPROGS = fastx34.exe tfastx34.exe .exe fasty34 tfasty34.exe
  15
  16 PROGS = $(SPROGS) $(TPROGS)
  17
  18 all : $(PROGS)
  19
  20 tall: $(TPROGS)
  21
  22 sall: $(SPROGS)
  23
  24 xall: $(XTPROGS) $(XPROGS) $(ZTPROGS) $(ZPROGS)
  25
  26 clean-up:
  27         del *.obj $(PROGS)
  28
  29 install: $(PROGS)
  30         copy $(PROGS) $(XDIR)
  31
  32 sinstall: $(SPROGS)
  33         copy $(SPROGS) $(XDIR)
  34
  35 tinstall: $(TPROGS)
  36         cp $(TPROGS) $(XDIR)
  37
  38 fasta34.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fa.obj scaleswn.obj karlin.obj $(DROPNFA_O) $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj
  39         $(CL) /Fefasta34.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fa.obj $(DROPNFA_O) scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj getopt.obj
  40
  41 fastx34.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fx.obj scaleswn.obj karlin.obj drop_fx.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj url_subs.obj $(NRAND).obj getopt.obj
  42         $(CL) /Fefastx34.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fx.obj drop_fx.obj scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj url_subs.obj $(NRAND).obj getopt.obj
  43
  44 fasty34.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fy.obj scaleswn.obj karlin.obj drop_fz.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj url_subs.obj $(NRAND).obj getopt.obj
  45         $(CL) /Fefasty34.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fy.obj drop_fz.obj scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj url_subs.obj $(NRAND).obj getopt.obj
  46
  47 fastf34.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_ff.obj scaleswts.obj last_tat.obj tatstats_ff.obj karlin.obj drop_ff.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj
  48         $(CL) /Fefastf34.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_ff.obj drop_ff.obj scaleswts.obj last_tat.obj tatstats_ff.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj
  49
  50 fastf34u : $(COMP_LIBO) compacc.obj showun.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_ff.obj scaleswtf.obj karlin.obj drop_ff.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj
  51         $(CL) /Fefastf34u.exe $(COMP_LIBO) compacc.obj showun.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_ff.obj drop_ff.obj scaleswtf.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj
  52
  53 fastf34s : $(COMP_LIBO) compacc.obj showsum.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_ff.obj scaleswtf.obj karlin.obj drop_ff.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj
  54         $(CL) /Fefastf34s.exe $(COMP_LIBO) compacc.obj showsum.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_ff.obj drop_ff.obj scaleswtf.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj
  55
  56 fasts34.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fs.obj scaleswts.obj last_tat.obj tatstats_fs.obj karlin.obj drop_fs.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj
  57         $(CL) /Fefasts34.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fs.obj drop_fs.obj scaleswts.obj last_tat.obj tatstats_fs.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj
  58
  59 fastm34.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fm.obj scaleswts.obj last_tat.obj tatstats_fm.obj karlin.obj drop_fm.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj
  60         $(CL) /Fefastm34.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fm.obj drop_fm.obj scaleswts.obj last_tat.obj tatstats_fm.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj
  61
  62 tfastx34.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tfx.obj scaleswn.obj karlin.obj drop_tfx.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj url_subs.obj $(NRAND).obj getopt.obj
  63         $(CL) /Fetfastx34.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tfx.obj drop_tfx.obj scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj url_subs.obj $(NRAND).obj getopt.obj
  64
  65 tfasty34.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tfy.obj scaleswn.obj karlin.obj drop_tfz.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj url_subs.obj $(NRAND).obj getopt.obj
  66         $(CL) /Fetfasty34.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tfy.obj drop_tfz.obj scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj url_subs.obj $(NRAND).obj getopt.obj
  67
  68 tfastf34.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tf.obj scaleswtf.obj last_tat.obj tatstats_ff.obj karlin.obj drop_tff.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj $(NRAND).obj url_subs.obj getopt.obj
  69         $(CL) /Fetfastf34.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tf.obj drop_tff.obj scaleswtf.obj last_tat.obj tatstats_ff.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj $(NRAND).obj url_subs.obj getopt.obj
  70
  71 tfastf34s : $(COMP_LIBO) compacc.obj showsum.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tf.obj scaleswtf.obj karlin.obj drop_tff.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj $(NRAND).obj url_subs.obj getopt.obj
  72         $(CL) /Fetfastf34s.exe $(COMP_LIBO) compacc.obj showsum.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tf.obj drop_tff.obj scaleswtf.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj $(NRAND).obj url_subs.obj getopt.obj
  73
  74 tfasts34.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tfs.obj scaleswts.obj tatstats_fs.obj last_tat.obj karlin.obj drop_tfs.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj $(NRAND).obj url_subs.obj getopt.obj
  75         $(CL) /Fetfasts34.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tfs.obj drop_tfs.obj scaleswts.obj tatstats_fs.obj last_tat.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj $(NRAND).obj url_subs.obj getopt.obj
  76
  77 tfastm34.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tfm.obj scaleswts.obj tatstats_fm.obj last_tat.obj karlin.obj drop_tfm.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj $(NRAND).obj url_subs.obj getopt.obj
  78         $(CL) /Fetfastm34.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tfm.obj drop_tfm.obj scaleswts.obj tatstats_fm.obj last_tat.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj $(NRAND).obj url_subs.obj getopt.obj
  79
  80 ssearch34.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_sw.obj scaleswn.obj karlin.obj $(DROPGSW_O) $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj pssm_asn_subs.obj getopt.obj
  81         $(CL) /Fessearch34.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_sw.obj $(DROPGSW_O) scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj pssm_asn_subs.obj getopt.obj
  82
  83 ssearch34sse2.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_sw.obj scaleswn.obj karlin.obj $(DROPGSW_SSE2_O) $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj pssm_asn_subs.obj getopt.obj
  84         $(CL) /Fessearch34sse2.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_sw.obj $(DROPGSW_SSE2_O) scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj pssm_asn_subs.obj getopt.obj
  85
  86 osearch34.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_ssw.obj scaleswn.obj karlin.obj dropnsw.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj getopt.obj
  87         $(CL) /Feosearch34.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_ssw.obj dropnsw.obj scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj getopt.obj
  88
  89 usearch34.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_sw.obj scaleswn.obj karlin.obj dropnsw.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj getopt.obj
  90         $(CL) /Feusearch34.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_sw.obj dropnsw.obj scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj getopt.obj
  91
  92 prss34.exe : rcomp_lib.obj compacc.obj htime.obj apam.obj doinit.obj init_rss.obj scaleswn.obj karlin.obj $(DROPRSS_O) llgetaa.obj showbest.obj mshowalign.obj c_dispn.obj lib_sel.obj url_subs.obj $(NRAND).obj pssm_asn_subs.obj
  93         $(CL) /Feprss34.exe rcomp_lib.obj compacc.obj htime.obj apam.obj doinit.obj init_rss.obj $(DROPRSS_O) scaleswn.obj karlin.obj llgetaa.obj showbest.obj mshowalign.obj c_dispn.obj lib_sel.obj url_subs.obj $(NRAND).obj pssm_asn_subs.obj getopt.obj
  94
  95 prss34sse2.exe : rcomp_lib.obj compacc.obj htime.obj apam.obj doinit.obj init_rss.obj scaleswn.obj karlin.obj $(DROPRSS_SSE2_O) llgetaa.obj showbest.obj mshowalign.obj c_dispn.obj lib_sel.obj url_subs.obj $(NRAND).obj pssm_asn_subs.obj
  96         $(CL) /Feprss34sse2.exe rcomp_lib.obj compacc.obj htime.obj apam.obj doinit.obj init_rss.obj $(DROPRSS_SSE2_O) scaleswn.obj karlin.obj llgetaa.obj showbest.obj mshowalign.obj c_dispn.obj lib_sel.obj url_subs.obj $(NRAND).obj pssm_asn_subs.obj getopt.obj
  97
  98 prfx34.exe : rcomp_lib.obj compacc.obj htime.obj apam.obj doinit.obj init_rfx.obj scaleswn.obj karlin.obj drop_fx.obj llgetaa.obj showbest.obj mshowalign.obj c_dispn.obj lib_sel.obj url_subs.obj $(NRAND).obj faatran.obj
  99         $(CL) /Feprfx34.exe rcomp_lib.obj compacc.obj htime.obj apam.obj doinit.obj init_rfx.obj drop_fx.obj scaleswn.obj karlin.obj llgetaa.obj showbest.obj mshowalign.obj c_dispn.obj lib_sel.obj faatran.obj url_subs.obj $(NRAND).obj getopt.obj
 100
 101 prss34o : rcomp_lib.obj compacc.obj htime.obj apam.obj doinit.obj init_rss.obj scaleswn.obj karlin.obj $(DROPRSS_O) llgetaa.obj showrss.obj lib_sel.obj $(NRAND).obj pssm_asn_subs.obj
 102         $(CL) /Feprss34o.exe rcomp_lib.obj compacc.obj htime.obj apam.obj doinit.obj init_rss.obj $(DROPRSS_O) scaleswn.obj karlin.obj llgetaa.obj showrss.obj lib_sel.obj $(NRAND).obj pssm_asn_subs.obj getopt.obj
 103
 104 prfx34o : rcomp_lib.obj compacc.obj htime.obj apam.obj doinit.obj init_rfx.obj scaleswn.obj karlin.obj drop_fx.obj llgetaa.obj showrss.obj lib_sel.obj $(NRAND).obj faatran.obj
 105         $(CL) /Feprfx34o.exe rcomp_lib.obj compacc.obj htime.obj apam.obj doinit.obj init_rfx.obj drop_fx.obj scaleswn.obj karlin.obj llgetaa.obj showrss.obj lib_sel.obj faatran.obj $(NRAND).obj getopt.obj
 106
 107 ssearch34_t.exe : $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_sw.obj scaleswn.obj karlin.obj $(DROPGSW_O) $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj pssm_asn_subs.obj getopt.obj
 108         $(CL) /Fessearch34_t.exe $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_sw.obj $(DROPGSW_O) scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj pssm_asn_subs.obj getopt.obj $(THR_LIBS)
 109
 110 ssearch34sse2_t.exe : $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_sw.obj scaleswn.obj karlin.obj $(DROPGSW_SSE2_O) $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj pssm_asn_subs.obj getopt.obj
 111         $(CL) /Fessearch34sse2_t.exe $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_sw.obj $(DROPGSW_SSE2_O) scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj pssm_asn_subs.obj getopt.obj $(THR_LIBS)
 112
 113 osearch34_t.exe : $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_sw.obj scaleswn.obj karlin.obj dropnsw.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj getopt.obj
 114         $(CL) /Feosearch34_t.exe $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_sw.obj dropnsw.obj scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj getopt.obj $(THR_LIBS)
 115
 116 usearch34_t.exe : $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_sw.obj scaleswn.obj karlin.obj dropnsw.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj getopt.obj
 117         $(CL) /Feusearch34_t.exe $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_sw.obj dropnsw.obj scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj getopt.obj $(THR_LIBS)
 118
 119 fasta34_t.exe : $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fa.obj scaleswn.obj karlin.obj $(DROPNFA_O) $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj getopt.obj
 120         $(CL) /Fefasta34_t.exe $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fa.obj $(DROPNFA_O) scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj getopt.obj $(THR_LIBS)
 121
 122 fasta34s_t.exe : $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showsum.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fa.obj scaleswn.obj karlin.obj $(DROPNFA_O) $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj getopt.obj
 123         $(CL) /Fefasta34s_t.exe $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showsum.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fa.obj $(DROPNFA_O) scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj getopt.obj $(THR_LIBS)
 124
 125 fasta34u_t.exe : $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showun.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fa.obj scaleswn.obj karlin.obj $(DROPNFA_O) $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj
 126         $(CL) /Fefasta34u_t.exe $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showun.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fa.obj $(DROPNFA_O) scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj $(THR_LIBS)
 127
 128 fasta34r_t.exe : $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showrel.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fa.obj scaleswn.obj karlin.obj $(DROPNFA_O) $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj
 129         $(CL) /Fefasta34r_t.exe $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showrel.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fa.obj $(DROPNFA_O) scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj $(THR_LIBS)
 130
 131 fastf34_t.exe : $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_ff.obj scaleswtf.obj last_tat.obj tatstats_ff.obj karlin.obj drop_ff.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj
 132         $(CL) /Fefastf34_t.exe $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_ff.obj drop_ff.obj scaleswtf.obj last_tat.obj tatstats_ff.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj $(THR_LIBS)
 133
 134 fastf34s_t.exe : $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showsum.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_ff.obj scaleswtf.obj karlin.obj drop_ff.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj
 135         $(CL) /Fefastf34s_t.exe $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showsum.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_ff.obj drop_ff.obj scaleswtf.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj $(THR_LIBS)
 136
 137 fasts34_t.exe : $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fs.obj scaleswts.obj last_tat.obj tatstats_fs.obj karlin.obj drop_fs.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj
 138         $(CL) /Fefasts34_t.exe $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fs.obj drop_fs.obj scaleswts.obj last_tat.obj tatstats_fs.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj $(THR_LIBS)
 139
 140 fastm34_t.exe : $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fs.obj scaleswts.obj last_tat.obj tatstats_fm.obj karlin.obj drop_fm.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj
 141         $(CL) /Fefastm34_t.exe $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fs.obj drop_fm.obj scaleswts.obj last_tat.obj tatstats_fm.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj $(NRAND).obj url_subs.obj getopt.obj $(THR_LIBS)
 142
 143 fastx34_t.exe : $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj c_dispn.obj htime.obj apam.obj doinit.obj init_fx.obj faatran.obj scaleswn.obj karlin.obj drop_fx.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj getopt.obj
 144         $(CL) /Fefastx34_t.exe $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fx.obj drop_fx.obj faatran.obj scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj getopt.obj $(THR_LIBS)
 145
 146 fasty34_t.exe : $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj c_dispn.obj htime.obj apam.obj doinit.obj init_fy.obj faatran.obj scaleswn.obj karlin.obj drop_fz.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj getopt.obj
 147         $(CL) /Fefasty34_t.exe $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_fy.obj drop_fz.obj faatran.obj scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj url_subs.obj $(NRAND).obj getopt.obj $(THR_LIBS)
 148
 149 tfasta34.exe : $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tfa.obj scaleswn.obj karlin.obj $(DROPTFA_O) $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj url_subs.obj $(NRAND).obj getopt.obj
 150         $(CL) /Fetfasta34.exe $(COMP_LIBO) compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tfa.obj $(DROPTFA_O) scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj url_subs.obj $(NRAND).obj getopt.obj
 151
 152 tfasta34_t.exe : $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj c_dispn.obj htime.obj apam.obj doinit.obj init_tfa.obj scaleswn.obj karlin.obj $(DROPTFA_O) $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj url_subs.obj $(NRAND).obj getopt.obj
 153         $(CL) /Fetfasta34_t.exe $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tfa.obj $(DROPTFA_O) scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj url_subs.obj $(NRAND).obj getopt.obj $(THR_LIBS)
 154
 155 tfastf34_t.exe : $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj c_dispn.obj htime.obj apam.obj doinit.obj init_tf.obj  scaleswtf.obj last_tat.obj tatstats_ff.obj karlin.obj drop_tff.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj $(NRAND).obj url_subs.obj getopt.obj
 156         $(CL) /Fetfastf34_t.exe $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tf.obj drop_tff.obj scaleswtf.obj last_tat.obj tatstats_ff.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj $(NRAND).obj url_subs.obj getopt.obj $(THR_LIBS)
 157
 158 tfasts34_t.exe : $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj c_dispn.obj htime.obj apam.obj doinit.obj init_tfs.obj scaleswts.obj last_tat.obj tatstats_fs.obj karlin.obj drop_tfs.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj $(NRAND).obj url_subs.obj getopt.obj
 159         $(CL) /Fetfasts34_t.exe $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tfs.obj drop_tfs.obj scaleswts.obj last_tat.obj tatstats_fs.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj $(NRAND).obj url_subs.obj getopt.obj $(THR_LIBS)
 160
 161 tfastx34_t.exe : $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tfx.obj scaleswn.obj karlin.obj drop_tfx.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj url_subs.obj $(NRAND).obj getopt.obj
 162         $(CL) /Fetfastx34_t.exe $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tfx.obj drop_tfx.obj scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj url_subs.obj $(NRAND).obj getopt.obj $(THR_LIBS)
 163
 164 tfasty34_t.exe : $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tfy.obj scaleswn.obj karlin.obj drop_tfz.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj url_subs.obj $(NRAND).obj getopt.obj
 165         $(CL) /Fetfasty34_t.exe $(COMP_THRO) work_thr.obj $(THR_SUBS).obj compacc.obj showbest.obj re_getlib.obj $(SHOWALIGN).obj htime.obj apam.obj doinit.obj init_tfy.obj drop_tfz.obj scaleswn.obj karlin.obj $(LGETLIB) c_dispn.obj $(NCBL_LIB) lib_sel.obj faatran.obj url_subs.obj $(NRAND).obj getopt.obj $(THR_LIBS)
 166
 167 prss34_t.exe : rcomp_thr.obj work_thr.obj $(THR_SUBS).obj compacc.obj htime.obj apam.obj doinit.obj init_rss.obj scaleswn.obj karlin.obj $(DROPRSS_O) llgetaa.obj showbest.obj $(SHOWALIGN).obj c_dispn.obj url_subs.obj lib_sel.obj $(NRAND).obj pssm_asn_subs.obj
 168         $(CL) /Feprss34_t.exe rcomp_thr.obj work_thr.obj $(THR_SUBS).obj compacc.obj htime.obj apam.obj doinit.obj init_rss.obj $(DROPRSS_SSE2_O) scaleswn.obj karlin.obj llgetaa.obj showbest.obj  $(SHOWALIGN).obj c_dispn.obj url_subs.obj lib_sel.obj $(NRAND).obj pssm_asn_subs.obj getopt.obj $(THR_LIBS)
 169
 170 prss34sse2_t.exe : rcomp_thr.obj work_thr.obj $(THR_SUBS).obj compacc.obj htime.obj apam.obj doinit.obj init_rss.obj scaleswn.obj karlin.obj $(DROPRSS_O) llgetaa.obj showbest.obj $(SHOWALIGN).obj c_dispn.obj url_subs.obj lib_sel.obj $(NRAND).obj pssm_asn_subs.obj
 171         $(CL) /Feprss34sse2_t.exe rcomp_thr.obj work_thr.obj $(THR_SUBS).obj compacc.obj htime.obj apam.obj doinit.obj init_rss.obj $(DROPRSS_SSE2_O) scaleswn.obj karlin.obj llgetaa.obj showbest.obj  $(SHOWALIGN).obj c_dispn.obj url_subs.obj lib_sel.obj $(NRAND).obj pssm_asn_subs.obj getopt.obj $(THR_LIBS)
 172
 173 prfx34_t.exe : rcomp_thr.obj work_thr.obj $(THR_SUBS).obj compacc.obj htime.obj apam.obj doinit.obj init_rfx.obj scaleswn.obj karlin.obj drop_fx.obj llgetaa.obj showbest.obj mshowalign.obj c_dispn.obj lib_sel.obj url_subs.obj $(NRAND).obj faatran.obj
 174         $(CL) /Feprfx34_t.exe rcomp_thr.obj work_thr.obj $(THR_SUBS).obj compacc.obj htime.obj apam.obj doinit.obj init_rfx.obj drop_fx.obj scaleswn.obj karlin.obj llgetaa.obj showbest.obj mshowalign.obj c_dispn.obj lib_sel.obj faatran.obj url_subs.obj $(NRAND).obj getopt.obj $(THR_LIBS)
 175
 176 comp_lib.obj : comp_lib.c mw.h structs.h defs.h param.h
 177         $(CC) $(CFLAGS) -c comp_lib.c
 178
 179 comp_mlib.obj : comp_lib.c mw.h structs.h defs.h param.h
 180         $(CC) $(CFLAGS) -DCOMP_MLIB -c comp_lib.c /Focomp_mlib.obj
 181
 182 rcomp_lib.obj : comp_lib.c mw.h structs.h defs.h param.h
 183         $(CC) $(CFLAGS) -c -DPRSS comp_lib.c /Forcomp_lib.obj
 184
 185 comp_thr.obj : comp_lib.c mw.h structs.h defs.h param.h thr.h
 186         $(CC) $(CFLAGS) -DCOMP_THR -c comp_lib.c /Focomp_thr.obj
 187
 188 comp_mthr.obj : comp_lib.c mw.h structs.h defs.h param.h thr.h
 189         $(CC) $(CFLAGS) -DCOMP_THR -DCOMP_MLIB -c comp_lib.c /Focomp_mthr.obj
 190
 191 rcomp_thr.obj : comp_lib.c mw.h structs.h defs.h param.h thr.h
 192         $(CC) $(CFLAGS) -DPRSS -DCOMP_THR -c comp_lib.c /Forcomp_thr.obj
 193
 194 work_thr.obj : work_thr.c mw.h structs.h defs.h param.h thr.h
 195         $(CC) $(CFLAGS) -c work_thr.c
 196
 197 print_pssm.exe : print_pssm.c getseq.c karlin.c apam.c
 198         $(CC) /Feprint_pssm.exe $(CFLAGS) print_pssm.c getseq.c karlin.c apam.c getopt.obj
 199
 200 map_db.exe : map_db.c  uascii.h ncbl2_head.h
 201         $(CC) /Femap_db.exe map_db.c
 202
 203 list_db.exe : list_db.c
 204         $(CC) /Felist_db.exe list_db.c
 205