binaries/src/compilebin.sh

   1 #!/bin/bash
   2
   3 echo ""
   4 echo "Compiling Clustalw..."
   5 cd clustalw
   6 chmod +x ./configure
   7 ./configure
   8 make clean
   9 make
  10 chmod +x src/clustalw2
  11 cd ..
  12
  13 echo "Compiling Mafft..."
  14 cd mafft/core
  15 make clean
  16 make
  17 cd ../..
  18
  19 echo "Compiling Mafft dependency fasta34..."
  20 cd fasta34
  21 rm *.o
  22 make
  23 chmod +x fasta34
  24 cd ..
  25
  26
  27 echo "Compiling Muscle..."
  28 cd muscle
  29 rm -f *.o muscle
  30 make
  31 cd ..
  32
  33 echo "Compiling Probcons..."
  34 cd probcons
  35 make clean
  36 make
  37 chmod +x probcons
  38 cd ..
  39
  40 echo "Compiling T-Coffee..."
  41 cd tcoffee
  42 chmod +x install
  43 ./install clean
  44 ./install t_coffee -force
  45 chmod +x t_coffee_source/t_coffee
  46 cd ..
  47
  48 echo "Compiling DisEMBL..."
  49 cd disembl
  50 gcc -O3 disembl.c -o disembl
  51 echo "DONE"
  52 chmod +x disembl DisEMBL.py
  53
  54 echo "Compiling DisEMBL dependancy Tisean... "
  55 cd Tisean_3.0.1
  56 chmod +x ./configure
  57 ./configure
  58 make
  59 cp source_c/sav_gol ../
  60 cd ..
  61 echo "DONE"
  62 chmod +x sav_gol
  63 cd ..
  64
  65 echo "Setting up GlobPlot ..."
  66 cp disembl/sav_gol globplot/sav_gol
  67 cd globplot
  68 chmod +x GlobPlot.py
  69 echo "DONE"
  70 cd ..
  71
  72 echo "Compiling IUPred..."
  73 cd iupred
  74 make clean
  75 make
  76 echo "DONE"
  77 cd ..
  78