conf/settings/AAConPresets.xml

   1 <?xml version="1.0" encoding="US-ASCII" standalone="yes"?>\r
   2 <presets>\r
   3  <runnerClassName>compbio.runner.conservation.AACon</runnerClassName>\r
   4         <preset>\r
   5                 <name>Quick conservation</name>\r
   6                 <description>Collection of fast conservation methods</description>\r
   7                 <optlist>\r
   8                         <option>-m=KABAT,JORES,SCHNEIDER,SHENKIN,GERSTEIN,TAYLOR_GAPS,TAYLOR_NO_GAPS,ZVELIBIL,ARMON,THOMPSON,NOT_LANCET,MIRNY,WILLIAMSON</option>\r
   9                 </optlist>\r
  10         </preset>\r
  11         <preset>\r
  12                 <name>Slow conservation</name>\r
  13                 <description>Collection of most expensive (slow) conservation methods</description>\r
  14                 <optlist>\r
  15                         <option>-m=LANDGRAF,KARLIN,SANDER,VALDAR,SMERFS</option>\r
  16                 </optlist>\r
  17         </preset>\r
  18         <preset>\r
  19                 <name>Complete conservation</name>\r
  20                 <description>Calculate conservation with all supported methods</description>\r
  21                 <optlist>\r
  22                         <option>-m=KABAT,JORES,SCHNEIDER,SHENKIN,GERSTEIN,TAYLOR_GAPS,TAYLOR_NO_GAPS,ZVELIBIL,ARMON,THOMPSON,NOT_LANCET,MIRNY,WILLIAMSON,LANDGRAF,KARLIN,SANDER,VALDAR,SMERFS</option>\r
  23                 </optlist>\r
  24         </preset>\r
  25 </presets>\r
  26 \r
  27 \r
  28 \r
  29  \r
  30 \r