webservices/compbio/ws/server/GlobPlotWS.java

   1 package compbio.ws.server;\r
   2 \r
   3 import java.util.List;\r
   4 \r
   5 import javax.jws.WebService;\r
   6 \r
   7 import org.apache.log4j.Logger;\r
   8 \r
   9 import compbio.data.msa.JABAService;\r
  10 import compbio.data.msa.SequenceAnnotation;\r
  11 import compbio.data.sequence.FastaSequence;\r
  12 import compbio.metadata.JobSubmissionException;\r
  13 import compbio.metadata.LimitExceededException;\r
  14 import compbio.metadata.Option;\r
  15 import compbio.metadata.Preset;\r
  16 import compbio.metadata.UnsupportedRuntimeException;\r
  17 import compbio.metadata.WrongParameterException;\r
  18 import compbio.runner.disorder.GlobPlot;\r
  19 \r
  20 @WebService(endpointInterface = "compbio.data.msa.SequenceAnnotation", targetNamespace = JABAService.V2_SERVICE_NAMESPACE, serviceName = "GlobPlotWS")\r
  21 public class GlobPlotWS extends SequenceAnnotationService<GlobPlot>\r
  22                 implements\r
  23                         SequenceAnnotation<GlobPlot> {\r
  24 \r
  25         private static Logger log = Logger.getLogger(GlobPlotWS.class);\r
  26 \r
  27         public GlobPlotWS() {\r
  28                 super(new GlobPlot(), log);\r
  29         }\r
  30 \r
  31         /*\r
  32          * No options are supported, thus the result of this call will be as simple\r
  33          * call to analize without parameters\r
  34          */\r
  35         @Override\r
  36         public String customAnalize(List<FastaSequence> sequences,\r
  37                         List<Option<GlobPlot>> options) throws UnsupportedRuntimeException,\r
  38                         LimitExceededException, JobSubmissionException,\r
  39                         WrongParameterException {\r
  40                 return analize(sequences);\r
  41         }\r
  42 \r
  43         /*\r
  44          * No presets are supported, thus the result of this call will be as simple\r
  45          * call to analize without parameters\r
  46          */\r
  47         @Override\r
  48         public String presetAnalize(List<FastaSequence> sequences,\r
  49                         Preset<GlobPlot> preset) throws UnsupportedRuntimeException,\r
  50                         LimitExceededException, JobSubmissionException,\r
  51                         WrongParameterException {\r
  52 \r
  53                 return analize(sequences);\r
  54         }\r
  55 \r
  56 }\r