webservices/compbio/ws/server/JronnWS.java

   1 package compbio.ws.server;\r
   2 \r
   3 import java.io.File;\r
   4 \r
   5 import javax.jws.WebService;\r
   6 \r
   7 import org.apache.log4j.Logger;\r
   8 \r
   9 import compbio.data.msa.JABAService;\r
  10 import compbio.data.msa.SequenceAnnotation;\r
  11 import compbio.engine.Configurator;\r
  12 import compbio.metadata.ChunkHolder;\r
  13 import compbio.runner.conservation.AACon;\r
  14 import compbio.runner.disorder.Jronn;\r
  15 \r
  16 @WebService(endpointInterface = "compbio.data.msa.SequenceAnnotation", targetNamespace = JABAService.V2_SERVICE_NAMESPACE, serviceName = "JronnWS")\r
  17 public class JronnWS extends SequenceAnnotationService<Jronn>\r
  18                 implements\r
  19                         SequenceAnnotation<Jronn> {\r
  20 \r
  21         private static Logger log = Logger.getLogger(JronnWS.class);\r
  22 \r
  23         public JronnWS() {\r
  24                 super(new Jronn(), log);\r
  25         }\r
  26 \r
  27         @Override\r
  28         public ChunkHolder pullExecStatistics(String jobId, long position) {\r
  29                 WSUtil.validateJobId(jobId);\r
  30                 String file = Configurator.getWorkDirectory(jobId) + File.separator\r
  31                                 + AACon.getStatFile();\r
  32                 return WSUtil.pullFile(file, position);\r
  33         }\r
  34 \r
  35 }\r