webservices/compbio/ws/server/resource/ClustalWS_schema1.xsd

   1 <?xml version="1.0" encoding="UTF-8" standalone="yes"?>
   2 <xs:schema version="1.0" targetNamespace="http://msa.data.compbio/01/01/2010/" xmlns:tns="http://msa.data.compbio/01/01/2010/" xmlns:xs="http://www.w3.org/2001/XMLSchema">
   3
   4   <xs:element name="JobSubmissionException" type="tns:JobSubmissionException"/>
   5
   6   <xs:element name="LimitExceededException" type="tns:LimitExceededException"/>
   7
   8   <xs:element name="ResultNotAvailableException" type="tns:ResultNotAvailableException"/>
   9
  10   <xs:element name="UnsupportedRuntimeException" type="tns:UnsupportedRuntimeException"/>
  11
  12   <xs:element name="WrongParameterException" type="tns:WrongParameterException"/>
  13
  14   <xs:element name="align" type="tns:align"/>
  15
  16   <xs:element name="alignResponse" type="tns:alignResponse"/>
  17
  18   <xs:element name="cancelJob" type="tns:cancelJob"/>
  19
  20   <xs:element name="cancelJobResponse" type="tns:cancelJobResponse"/>
  21
  22   <xs:element name="customAlign" type="tns:customAlign"/>
  23
  24   <xs:element name="customAlignResponse" type="tns:customAlignResponse"/>
  25
  26   <xs:element name="getJobStatus" type="tns:getJobStatus"/>
  27
  28   <xs:element name="getJobStatusResponse" type="tns:getJobStatusResponse"/>
  29
  30   <xs:element name="getLimit" type="tns:getLimit"/>
  31
  32   <xs:element name="getLimitResponse" type="tns:getLimitResponse"/>
  33
  34   <xs:element name="getLimits" type="tns:getLimits"/>
  35
  36   <xs:element name="getLimitsResponse" type="tns:getLimitsResponse"/>
  37
  38   <xs:element name="getPresets" type="tns:getPresets"/>
  39
  40   <xs:element name="getPresetsResponse" type="tns:getPresetsResponse"/>
  41
  42   <xs:element name="getResult" type="tns:getResult"/>
  43
  44   <xs:element name="getResultResponse" type="tns:getResultResponse"/>
  45
  46   <xs:element name="getRunnerOptions" type="tns:getRunnerOptions"/>
  47
  48   <xs:element name="getRunnerOptionsResponse" type="tns:getRunnerOptionsResponse"/>
  49
  50   <xs:element name="limits" type="tns:limitsManager"/>
  51
  52   <xs:element name="presetAlign" type="tns:presetAlign"/>
  53
  54   <xs:element name="presetAlignResponse" type="tns:presetAlignResponse"/>
  55
  56   <xs:element name="presets" type="tns:presetManager"/>
  57
  58   <xs:element name="pullExecStatistics" type="tns:pullExecStatistics"/>
  59
  60   <xs:element name="pullExecStatisticsResponse" type="tns:pullExecStatisticsResponse"/>
  61
  62   <xs:element name="runnerConfig" type="tns:runnerConfig"/>
  63
  64   <xs:complexType name="getJobStatus">
  65     <xs:sequence>
  66       <xs:element name="jobId" type="xs:string" minOccurs="0"/>
  67     </xs:sequence>
  68   </xs:complexType>
  69
  70   <xs:complexType name="getJobStatusResponse">
  71     <xs:sequence>
  72       <xs:element name="return" type="tns:jobStatus" minOccurs="0"/>
  73     </xs:sequence>
  74   </xs:complexType>
  75
  76   <xs:complexType name="getRunnerOptions">
  77     <xs:sequence/>
  78   </xs:complexType>
  79
  80   <xs:complexType name="getRunnerOptionsResponse">
  81     <xs:sequence>
  82       <xs:element name="return" type="tns:runnerConfig" minOccurs="0"/>
  83     </xs:sequence>
  84   </xs:complexType>
  85
  86   <xs:complexType name="runnerConfig">
  87     <xs:sequence>
  88       <xs:element name="options" type="tns:option" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
  89       <xs:element name="parameters" type="tns:parameter" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
  90       <xs:element name="prmSeparator" type="xs:string" minOccurs="0"/>
  91       <xs:element name="runnerClassName" type="xs:string"/>
  92     </xs:sequence>
  93   </xs:complexType>
  94
  95   <xs:complexType name="option">
  96     <xs:sequence>
  97       <xs:element name="description" type="xs:string"/>
  98       <xs:element name="optionNames" type="xs:string" maxOccurs="unbounded"/>
  99       <xs:element name="name" type="xs:string"/>
 100       <xs:element name="furtherDetails" type="xs:string" minOccurs="0"/>
 101       <xs:element name="defaultValue" type="xs:string" minOccurs="0"/>
 102     </xs:sequence>
 103     <xs:attribute name="isRequired" type="xs:boolean" use="required"/>
 104   </xs:complexType>
 105
 106   <xs:complexType name="parameter">
 107     <xs:complexContent>
 108       <xs:extension base="tns:option">
 109         <xs:sequence>
 110           <xs:element name="possibleValues" type="xs:string" minOccurs="0" maxOccurs="unbounded"/>
 111           <xs:element name="validValue" type="tns:valueConstrain" minOccurs="0"/>
 112         </xs:sequence>
 113       </xs:extension>
 114     </xs:complexContent>
 115   </xs:complexType>
 116
 117   <xs:complexType name="valueConstrain">
 118     <xs:sequence>
 119       <xs:element name="type" type="tns:type"/>
 120       <xs:element name="max" type="xs:string" minOccurs="0"/>
 121       <xs:element name="min" type="xs:string" minOccurs="0"/>
 122     </xs:sequence>
 123   </xs:complexType>
 124
 125   <xs:complexType name="getResult">
 126     <xs:sequence>
 127       <xs:element name="jobId" type="xs:string" minOccurs="0"/>
 128     </xs:sequence>
 129   </xs:complexType>
 130
 131   <xs:complexType name="getResultResponse">
 132     <xs:sequence>
 133       <xs:element name="return" type="tns:alignment" minOccurs="0"/>
 134     </xs:sequence>
 135   </xs:complexType>
 136
 137   <xs:complexType name="alignment">
 138     <xs:sequence>
 139       <xs:element name="metadata" type="tns:alignmentMetadata" minOccurs="0"/>
 140       <xs:element name="sequences" type="tns:fastaSequence" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
 141     </xs:sequence>
 142   </xs:complexType>
 143
 144   <xs:complexType name="alignmentMetadata">
 145     <xs:sequence>
 146       <xs:element name="program" type="tns:program" minOccurs="0"/>
 147       <xs:element name="gapchar" type="xs:unsignedShort"/>
 148     </xs:sequence>
 149   </xs:complexType>
 150
 151   <xs:complexType name="fastaSequence">
 152     <xs:sequence>
 153       <xs:element name="id" type="xs:string" minOccurs="0"/>
 154       <xs:element name="sequence" type="xs:string" minOccurs="0"/>
 155     </xs:sequence>
 156   </xs:complexType>
 157
 158   <xs:complexType name="jpredAlignment">
 159     <xs:complexContent>
 160       <xs:extension base="tns:alignment">
 161         <xs:sequence/>
 162       </xs:extension>
 163     </xs:complexContent>
 164   </xs:complexType>
 165
 166   <xs:complexType name="ResultNotAvailableException">
 167     <xs:sequence>
 168       <xs:element name="message" type="xs:string" minOccurs="0"/>
 169     </xs:sequence>
 170   </xs:complexType>
 171
 172   <xs:complexType name="getPresets">
 173     <xs:sequence/>
 174   </xs:complexType>
 175
 176   <xs:complexType name="getPresetsResponse">
 177     <xs:sequence>
 178       <xs:element name="return" type="tns:presetManager" minOccurs="0"/>
 179     </xs:sequence>
 180   </xs:complexType>
 181
 182   <xs:complexType name="presetManager">
 183     <xs:sequence>
 184       <xs:element name="runnerClassName" type="xs:string"/>
 185       <xs:element name="preset" type="tns:preset" maxOccurs="unbounded"/>
 186     </xs:sequence>
 187   </xs:complexType>
 188
 189   <xs:complexType name="preset">
 190     <xs:sequence>
 191       <xs:element name="name" type="xs:string"/>
 192       <xs:element name="description" type="xs:string" minOccurs="0"/>
 193       <xs:element name="optlist" minOccurs="0">
 194         <xs:complexType>
 195           <xs:sequence>
 196             <xs:element name="option" type="xs:string" maxOccurs="unbounded"/>
 197           </xs:sequence>
 198         </xs:complexType>
 199       </xs:element>
 200     </xs:sequence>
 201   </xs:complexType>
 202
 203   <xs:complexType name="getLimits">
 204     <xs:sequence/>
 205   </xs:complexType>
 206
 207   <xs:complexType name="getLimitsResponse">
 208     <xs:sequence>
 209       <xs:element name="return" type="tns:limitsManager" minOccurs="0"/>
 210     </xs:sequence>
 211   </xs:complexType>
 212
 213   <xs:complexType name="limitsManager">
 214     <xs:sequence>
 215       <xs:element name="runnerClassName" type="xs:string" minOccurs="0"/>
 216       <xs:element name="limit" type="tns:limit" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
 217     </xs:sequence>
 218   </xs:complexType>
 219
 220   <xs:complexType name="limit">
 221     <xs:sequence>
 222       <xs:element name="preset" type="xs:string" minOccurs="0"/>
 223       <xs:element name="seqNumber" type="xs:int"/>
 224       <xs:element name="seqLength" type="xs:int"/>
 225     </xs:sequence>
 226     <xs:attribute name="isDefault" type="xs:boolean" use="required"/>
 227   </xs:complexType>
 228
 229   <xs:complexType name="getLimit">
 230     <xs:sequence>
 231       <xs:element name="presetName" type="xs:string" minOccurs="0"/>
 232     </xs:sequence>
 233   </xs:complexType>
 234
 235   <xs:complexType name="getLimitResponse">
 236     <xs:sequence>
 237       <xs:element name="return" type="tns:limit" minOccurs="0"/>
 238     </xs:sequence>
 239   </xs:complexType>
 240
 241   <xs:complexType name="cancelJob">
 242     <xs:sequence>
 243       <xs:element name="jobId" type="xs:string" minOccurs="0"/>
 244     </xs:sequence>
 245   </xs:complexType>
 246
 247   <xs:complexType name="cancelJobResponse">
 248     <xs:sequence>
 249       <xs:element name="return" type="xs:boolean"/>
 250     </xs:sequence>
 251   </xs:complexType>
 252
 253   <xs:complexType name="presetAlign">
 254     <xs:sequence>
 255       <xs:element name="fastaSequences" type="tns:fastaSequence" minOccurs="0" maxOccurs="unbounded"/>
 256       <xs:element name="preset" type="tns:preset" minOccurs="0"/>
 257     </xs:sequence>
 258   </xs:complexType>
 259
 260   <xs:complexType name="presetAlignResponse">
 261     <xs:sequence>
 262       <xs:element name="return" type="xs:string" minOccurs="0"/>
 263     </xs:sequence>
 264   </xs:complexType>
 265
 266   <xs:complexType name="UnsupportedRuntimeException">
 267     <xs:sequence>
 268       <xs:element name="message" type="xs:string" minOccurs="0"/>
 269     </xs:sequence>
 270   </xs:complexType>
 271
 272   <xs:complexType name="LimitExceededException">
 273     <xs:sequence>
 274       <xs:element name="actualNumberofSequences" type="xs:int"/>
 275       <xs:element name="message" type="xs:string" minOccurs="0"/>
 276       <xs:element name="numberOfSequencesAllowed" type="xs:int"/>
 277       <xs:element name="sequenceLenghtActual" type="xs:int"/>
 278       <xs:element name="sequenceLenghtAllowed" type="xs:int"/>
 279     </xs:sequence>
 280   </xs:complexType>
 281
 282   <xs:complexType name="JobSubmissionException">
 283     <xs:sequence>
 284       <xs:element name="message" type="xs:string" minOccurs="0"/>
 285     </xs:sequence>
 286   </xs:complexType>
 287
 288   <xs:complexType name="WrongParameterException">
 289     <xs:sequence>
 290       <xs:element name="message" type="xs:string" minOccurs="0"/>
 291     </xs:sequence>
 292   </xs:complexType>
 293
 294   <xs:complexType name="pullExecStatistics">
 295     <xs:sequence>
 296       <xs:element name="jobId" type="xs:string" minOccurs="0"/>
 297       <xs:element name="position" type="xs:long"/>
 298     </xs:sequence>
 299   </xs:complexType>
 300
 301   <xs:complexType name="pullExecStatisticsResponse">
 302     <xs:sequence>
 303       <xs:element name="return" type="tns:chunkHolder" minOccurs="0"/>
 304     </xs:sequence>
 305   </xs:complexType>
 306
 307   <xs:complexType name="chunkHolder">
 308     <xs:sequence>
 309       <xs:element name="chunk" type="xs:string" minOccurs="0"/>
 310       <xs:element name="position" type="xs:long"/>
 311     </xs:sequence>
 312   </xs:complexType>
 313
 314   <xs:complexType name="align">
 315     <xs:sequence>
 316       <xs:element name="fastaSequences" type="tns:fastaSequence" minOccurs="0" maxOccurs="unbounded"/>
 317     </xs:sequence>
 318   </xs:complexType>
 319
 320   <xs:complexType name="alignResponse">
 321     <xs:sequence>
 322       <xs:element name="return" type="xs:string" minOccurs="0"/>
 323     </xs:sequence>
 324   </xs:complexType>
 325
 326   <xs:complexType name="customAlign">
 327     <xs:sequence>
 328       <xs:element name="fastaSequences" type="tns:fastaSequence" minOccurs="0" maxOccurs="unbounded"/>
 329       <xs:element name="options" type="tns:option" minOccurs="0" maxOccurs="unbounded"/>
 330     </xs:sequence>
 331   </xs:complexType>
 332
 333   <xs:complexType name="customAlignResponse">
 334     <xs:sequence>
 335       <xs:element name="return" type="xs:string" minOccurs="0"/>
 336     </xs:sequence>
 337   </xs:complexType>
 338
 339   <xs:simpleType name="jobStatus">
 340     <xs:restriction base="xs:string">
 341       <xs:enumeration value="PENDING"/>
 342       <xs:enumeration value="RUNNING"/>
 343       <xs:enumeration value="CANCELLED"/>
 344       <xs:enumeration value="FINISHED"/>
 345       <xs:enumeration value="FAILED"/>
 346       <xs:enumeration value="UNDEFINED"/>
 347       <xs:enumeration value="STARTED"/>
 348       <xs:enumeration value="SUBMITTED"/>
 349       <xs:enumeration value="COLLECTED"/>
 350     </xs:restriction>
 351   </xs:simpleType>
 352
 353   <xs:simpleType name="type">
 354     <xs:restriction base="xs:string">
 355       <xs:enumeration value="Integer"/>
 356       <xs:enumeration value="Float"/>
 357     </xs:restriction>
 358   </xs:simpleType>
 359
 360   <xs:simpleType name="program">
 361     <xs:restriction base="xs:string">
 362       <xs:enumeration value="CLUSTAL"/>
 363       <xs:enumeration value="ClustalO"/>
 364       <xs:enumeration value="Mafft"/>
 365       <xs:enumeration value="Muscle"/>
 366       <xs:enumeration value="Tcoffee"/>
 367       <xs:enumeration value="Probcons"/>
 368       <xs:enumeration value="Jpred"/>
 369     </xs:restriction>
 370   </xs:simpleType>
 371 </xs:schema>
 372