webservices/compbio/ws/server/resource/GLprobsWS_schema1.xsd

   1 <?xml version="1.0" encoding="UTF-8" standalone="yes"?>
   2 <xs:schema version="1.0" targetNamespace="http://msa.data.compbio/01/01/2010/" xmlns:tns="http://msa.data.compbio/01/01/2010/" xmlns:xs="http://www.w3.org/2001/XMLSchema">
   3
   4   <xs:element name="JobSubmissionException" type="tns:JobSubmissionException"/>
   5
   6   <xs:element name="LimitExceededException" type="tns:LimitExceededException"/>
   7
   8   <xs:element name="ResultNotAvailableException" type="tns:ResultNotAvailableException"/>
   9
  10   <xs:element name="UnsupportedRuntimeException" type="tns:UnsupportedRuntimeException"/>
  11
  12   <xs:element name="WrongParameterException" type="tns:WrongParameterException"/>
  13
  14   <xs:element name="align" type="tns:align"/>
  15
  16   <xs:element name="alignResponse" type="tns:alignResponse"/>
  17
  18   <xs:element name="cancelJob" type="tns:cancelJob"/>
  19
  20   <xs:element name="cancelJobResponse" type="tns:cancelJobResponse"/>
  21
  22   <xs:element name="customAlign" type="tns:customAlign"/>
  23
  24   <xs:element name="customAlignResponse" type="tns:customAlignResponse"/>
  25
  26   <xs:element name="getJobStatus" type="tns:getJobStatus"/>
  27
  28   <xs:element name="getJobStatusResponse" type="tns:getJobStatusResponse"/>
  29
  30   <xs:element name="getLimit" type="tns:getLimit"/>
  31
  32   <xs:element name="getLimitResponse" type="tns:getLimitResponse"/>
  33
  34   <xs:element name="getLimits" type="tns:getLimits"/>
  35
  36   <xs:element name="getLimitsResponse" type="tns:getLimitsResponse"/>
  37
  38   <xs:element name="getPresets" type="tns:getPresets"/>
  39
  40   <xs:element name="getPresetsResponse" type="tns:getPresetsResponse"/>
  41
  42   <xs:element name="getResult" type="tns:getResult"/>
  43
  44   <xs:element name="getResultResponse" type="tns:getResultResponse"/>
  45
  46   <xs:element name="getRunnerOptions" type="tns:getRunnerOptions"/>
  47
  48   <xs:element name="getRunnerOptionsResponse" type="tns:getRunnerOptionsResponse"/>
  49
  50   <xs:element name="limits" type="tns:limitsManager"/>
  51
  52   <xs:element name="presetAlign" type="tns:presetAlign"/>
  53
  54   <xs:element name="presetAlignResponse" type="tns:presetAlignResponse"/>
  55
  56   <xs:element name="presets" type="tns:presetManager"/>
  57
  58   <xs:element name="pullExecStatistics" type="tns:pullExecStatistics"/>
  59
  60   <xs:element name="pullExecStatisticsResponse" type="tns:pullExecStatisticsResponse"/>
  61
  62   <xs:element name="runnerConfig" type="tns:runnerConfig"/>
  63
  64   <xs:complexType name="getRunnerOptions">
  65     <xs:sequence/>
  66   </xs:complexType>
  67
  68   <xs:complexType name="getRunnerOptionsResponse">
  69     <xs:sequence>
  70       <xs:element name="return" type="tns:runnerConfig" minOccurs="0"/>
  71     </xs:sequence>
  72   </xs:complexType>
  73
  74   <xs:complexType name="runnerConfig">
  75     <xs:sequence>
  76       <xs:element name="options" type="tns:option" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
  77       <xs:element name="parameters" type="tns:parameter" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
  78       <xs:element name="prmSeparator" type="xs:string" minOccurs="0"/>
  79       <xs:element name="runnerClassName" type="xs:string"/>
  80     </xs:sequence>
  81   </xs:complexType>
  82
  83   <xs:complexType name="option">
  84     <xs:sequence>
  85       <xs:element name="description" type="xs:string"/>
  86       <xs:element name="optionNames" type="xs:string" maxOccurs="unbounded"/>
  87       <xs:element name="name" type="xs:string"/>
  88       <xs:element name="furtherDetails" type="xs:string" minOccurs="0"/>
  89       <xs:element name="defaultValue" type="xs:string" minOccurs="0"/>
  90     </xs:sequence>
  91     <xs:attribute name="isRequired" type="xs:boolean" use="required"/>
  92   </xs:complexType>
  93
  94   <xs:complexType name="parameter">
  95     <xs:complexContent>
  96       <xs:extension base="tns:option">
  97         <xs:sequence>
  98           <xs:element name="possibleValues" type="xs:string" minOccurs="0" maxOccurs="unbounded"/>
  99           <xs:element name="validValue" type="tns:valueConstrain" minOccurs="0"/>
 100         </xs:sequence>
 101       </xs:extension>
 102     </xs:complexContent>
 103   </xs:complexType>
 104
 105   <xs:complexType name="valueConstrain">
 106     <xs:sequence>
 107       <xs:element name="type" type="tns:type"/>
 108       <xs:element name="max" type="xs:string" minOccurs="0"/>
 109       <xs:element name="min" type="xs:string" minOccurs="0"/>
 110     </xs:sequence>
 111   </xs:complexType>
 112
 113   <xs:complexType name="getResult">
 114     <xs:sequence>
 115       <xs:element name="jobId" type="xs:string" minOccurs="0"/>
 116     </xs:sequence>
 117   </xs:complexType>
 118
 119   <xs:complexType name="getResultResponse">
 120     <xs:sequence>
 121       <xs:element name="return" type="tns:alignment" minOccurs="0"/>
 122     </xs:sequence>
 123   </xs:complexType>
 124
 125   <xs:complexType name="alignment">
 126     <xs:sequence>
 127       <xs:element name="metadata" type="tns:alignmentMetadata" minOccurs="0"/>
 128       <xs:element name="sequences" type="tns:fastaSequence" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
 129     </xs:sequence>
 130   </xs:complexType>
 131
 132   <xs:complexType name="alignmentMetadata">
 133     <xs:sequence>
 134       <xs:element name="program" type="tns:program" minOccurs="0"/>
 135       <xs:element name="gapchar" type="xs:unsignedShort"/>
 136     </xs:sequence>
 137   </xs:complexType>
 138
 139   <xs:complexType name="fastaSequence">
 140     <xs:sequence>
 141       <xs:element name="id" type="xs:string" minOccurs="0"/>
 142       <xs:element name="sequence" type="xs:string" minOccurs="0"/>
 143     </xs:sequence>
 144   </xs:complexType>
 145
 146   <xs:complexType name="jpredAlignment">
 147     <xs:complexContent>
 148       <xs:extension base="tns:alignment">
 149         <xs:sequence/>
 150       </xs:extension>
 151     </xs:complexContent>
 152   </xs:complexType>
 153
 154   <xs:complexType name="ResultNotAvailableException">
 155     <xs:sequence>
 156       <xs:element name="message" type="xs:string" minOccurs="0"/>
 157     </xs:sequence>
 158   </xs:complexType>
 159
 160   <xs:complexType name="getJobStatus">
 161     <xs:sequence>
 162       <xs:element name="jobId" type="xs:string" minOccurs="0"/>
 163     </xs:sequence>
 164   </xs:complexType>
 165
 166   <xs:complexType name="getJobStatusResponse">
 167     <xs:sequence>
 168       <xs:element name="return" type="tns:jobStatus" minOccurs="0"/>
 169     </xs:sequence>
 170   </xs:complexType>
 171
 172   <xs:complexType name="align">
 173     <xs:sequence>
 174       <xs:element name="fastaSequences" type="tns:fastaSequence" minOccurs="0" maxOccurs="unbounded"/>
 175     </xs:sequence>
 176   </xs:complexType>
 177
 178   <xs:complexType name="alignResponse">
 179     <xs:sequence>
 180       <xs:element name="return" type="xs:string" minOccurs="0"/>
 181     </xs:sequence>
 182   </xs:complexType>
 183
 184   <xs:complexType name="UnsupportedRuntimeException">
 185     <xs:sequence>
 186       <xs:element name="message" type="xs:string" minOccurs="0"/>
 187     </xs:sequence>
 188   </xs:complexType>
 189
 190   <xs:complexType name="LimitExceededException">
 191     <xs:sequence>
 192       <xs:element name="actualNumberofSequences" type="xs:int"/>
 193       <xs:element name="message" type="xs:string" minOccurs="0"/>
 194       <xs:element name="numberOfSequencesAllowed" type="xs:int"/>
 195       <xs:element name="sequenceLenghtActual" type="xs:int"/>
 196       <xs:element name="sequenceLenghtAllowed" type="xs:int"/>
 197     </xs:sequence>
 198   </xs:complexType>
 199
 200   <xs:complexType name="JobSubmissionException">
 201     <xs:sequence>
 202       <xs:element name="message" type="xs:string" minOccurs="0"/>
 203     </xs:sequence>
 204   </xs:complexType>
 205
 206   <xs:complexType name="customAlign">
 207     <xs:sequence>
 208       <xs:element name="fastaSequences" type="tns:fastaSequence" minOccurs="0" maxOccurs="unbounded"/>
 209       <xs:element name="options" type="tns:option" minOccurs="0" maxOccurs="unbounded"/>
 210     </xs:sequence>
 211   </xs:complexType>
 212
 213   <xs:complexType name="customAlignResponse">
 214     <xs:sequence>
 215       <xs:element name="return" type="xs:string" minOccurs="0"/>
 216     </xs:sequence>
 217   </xs:complexType>
 218
 219   <xs:complexType name="WrongParameterException">
 220     <xs:sequence>
 221       <xs:element name="message" type="xs:string" minOccurs="0"/>
 222     </xs:sequence>
 223   </xs:complexType>
 224
 225   <xs:complexType name="pullExecStatistics">
 226     <xs:sequence>
 227       <xs:element name="jobId" type="xs:string" minOccurs="0"/>
 228       <xs:element name="position" type="xs:long"/>
 229     </xs:sequence>
 230   </xs:complexType>
 231
 232   <xs:complexType name="pullExecStatisticsResponse">
 233     <xs:sequence>
 234       <xs:element name="return" type="tns:chunkHolder" minOccurs="0"/>
 235     </xs:sequence>
 236   </xs:complexType>
 237
 238   <xs:complexType name="chunkHolder">
 239     <xs:sequence>
 240       <xs:element name="chunk" type="xs:string" minOccurs="0"/>
 241       <xs:element name="position" type="xs:long"/>
 242     </xs:sequence>
 243   </xs:complexType>
 244
 245   <xs:complexType name="presetAlign">
 246     <xs:sequence>
 247       <xs:element name="fastaSequences" type="tns:fastaSequence" minOccurs="0" maxOccurs="unbounded"/>
 248       <xs:element name="preset" type="tns:preset" minOccurs="0"/>
 249     </xs:sequence>
 250   </xs:complexType>
 251
 252   <xs:complexType name="preset">
 253     <xs:sequence>
 254       <xs:element name="name" type="xs:string"/>
 255       <xs:element name="description" type="xs:string" minOccurs="0"/>
 256       <xs:element name="optlist" minOccurs="0">
 257         <xs:complexType>
 258           <xs:sequence>
 259             <xs:element name="option" type="xs:string" maxOccurs="unbounded"/>
 260           </xs:sequence>
 261         </xs:complexType>
 262       </xs:element>
 263     </xs:sequence>
 264   </xs:complexType>
 265
 266   <xs:complexType name="presetAlignResponse">
 267     <xs:sequence>
 268       <xs:element name="return" type="xs:string" minOccurs="0"/>
 269     </xs:sequence>
 270   </xs:complexType>
 271
 272   <xs:complexType name="getPresets">
 273     <xs:sequence/>
 274   </xs:complexType>
 275
 276   <xs:complexType name="getPresetsResponse">
 277     <xs:sequence>
 278       <xs:element name="return" type="tns:presetManager" minOccurs="0"/>
 279     </xs:sequence>
 280   </xs:complexType>
 281
 282   <xs:complexType name="presetManager">
 283     <xs:sequence>
 284       <xs:element name="runnerClassName" type="xs:string"/>
 285       <xs:element name="preset" type="tns:preset" maxOccurs="unbounded"/>
 286     </xs:sequence>
 287   </xs:complexType>
 288
 289   <xs:complexType name="getLimits">
 290     <xs:sequence/>
 291   </xs:complexType>
 292
 293   <xs:complexType name="getLimitsResponse">
 294     <xs:sequence>
 295       <xs:element name="return" type="tns:limitsManager" minOccurs="0"/>
 296     </xs:sequence>
 297   </xs:complexType>
 298
 299   <xs:complexType name="limitsManager">
 300     <xs:sequence>
 301       <xs:element name="runnerClassName" type="xs:string" minOccurs="0"/>
 302       <xs:element name="limit" type="tns:limit" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
 303     </xs:sequence>
 304   </xs:complexType>
 305
 306   <xs:complexType name="limit">
 307     <xs:sequence>
 308       <xs:element name="preset" type="xs:string" minOccurs="0"/>
 309       <xs:element name="seqNumber" type="xs:int"/>
 310       <xs:element name="seqLength" type="xs:int"/>
 311     </xs:sequence>
 312     <xs:attribute name="isDefault" type="xs:boolean" use="required"/>
 313   </xs:complexType>
 314
 315   <xs:complexType name="getLimit">
 316     <xs:sequence>
 317       <xs:element name="presetName" type="xs:string" minOccurs="0"/>
 318     </xs:sequence>
 319   </xs:complexType>
 320
 321   <xs:complexType name="getLimitResponse">
 322     <xs:sequence>
 323       <xs:element name="return" type="tns:limit" minOccurs="0"/>
 324     </xs:sequence>
 325   </xs:complexType>
 326
 327   <xs:complexType name="cancelJob">
 328     <xs:sequence>
 329       <xs:element name="jobId" type="xs:string" minOccurs="0"/>
 330     </xs:sequence>
 331   </xs:complexType>
 332
 333   <xs:complexType name="cancelJobResponse">
 334     <xs:sequence>
 335       <xs:element name="return" type="xs:boolean"/>
 336     </xs:sequence>
 337   </xs:complexType>
 338
 339   <xs:simpleType name="type">
 340     <xs:restriction base="xs:string">
 341       <xs:enumeration value="Integer"/>
 342       <xs:enumeration value="Float"/>
 343     </xs:restriction>
 344   </xs:simpleType>
 345
 346   <xs:simpleType name="program">
 347     <xs:restriction base="xs:string">
 348       <xs:enumeration value="CLUSTAL"/>
 349       <xs:enumeration value="ClustalO"/>
 350       <xs:enumeration value="Mafft"/>
 351       <xs:enumeration value="Muscle"/>
 352       <xs:enumeration value="Tcoffee"/>
 353       <xs:enumeration value="Probcons"/>
 354       <xs:enumeration value="MSAprobs"/>
 355       <xs:enumeration value="GLprobs"/>
 356       <xs:enumeration value="Jpred"/>
 357     </xs:restriction>
 358   </xs:simpleType>
 359
 360   <xs:simpleType name="jobStatus">
 361     <xs:restriction base="xs:string">
 362       <xs:enumeration value="PENDING"/>
 363       <xs:enumeration value="RUNNING"/>
 364       <xs:enumeration value="CANCELLED"/>
 365       <xs:enumeration value="FINISHED"/>
 366       <xs:enumeration value="FAILED"/>
 367       <xs:enumeration value="UNDEFINED"/>
 368       <xs:enumeration value="STARTED"/>
 369       <xs:enumeration value="SUBMITTED"/>
 370       <xs:enumeration value="COLLECTED"/>
 371     </xs:restriction>
 372   </xs:simpleType>
 373 </xs:schema>
 374