webservices/compbio/ws/server/resource/MafftWS_schema1.xsd

   1 <?xml version="1.0" encoding="UTF-8" standalone="yes"?>
   2 <xs:schema version="1.0" targetNamespace="http://msa.data.compbio/01/01/2010/" xmlns:tns="http://msa.data.compbio/01/01/2010/" xmlns:xs="http://www.w3.org/2001/XMLSchema">
   3
   4   <xs:element name="JobSubmissionException" type="tns:JobSubmissionException"/>
   5
   6   <xs:element name="LimitExceededException" type="tns:LimitExceededException"/>
   7
   8   <xs:element name="ResultNotAvailableException" type="tns:ResultNotAvailableException"/>
   9
  10   <xs:element name="UnsupportedRuntimeException" type="tns:UnsupportedRuntimeException"/>
  11
  12   <xs:element name="WrongParameterException" type="tns:WrongParameterException"/>
  13
  14   <xs:element name="align" type="tns:align"/>
  15
  16   <xs:element name="alignResponse" type="tns:alignResponse"/>
  17
  18   <xs:element name="cancelJob" type="tns:cancelJob"/>
  19
  20   <xs:element name="cancelJobResponse" type="tns:cancelJobResponse"/>
  21
  22   <xs:element name="customAlign" type="tns:customAlign"/>
  23
  24   <xs:element name="customAlignResponse" type="tns:customAlignResponse"/>
  25
  26   <xs:element name="getJobStatus" type="tns:getJobStatus"/>
  27
  28   <xs:element name="getJobStatusResponse" type="tns:getJobStatusResponse"/>
  29
  30   <xs:element name="getLimit" type="tns:getLimit"/>
  31
  32   <xs:element name="getLimitResponse" type="tns:getLimitResponse"/>
  33
  34   <xs:element name="getLimits" type="tns:getLimits"/>
  35
  36   <xs:element name="getLimitsResponse" type="tns:getLimitsResponse"/>
  37
  38   <xs:element name="getPresets" type="tns:getPresets"/>
  39
  40   <xs:element name="getPresetsResponse" type="tns:getPresetsResponse"/>
  41
  42   <xs:element name="getResult" type="tns:getResult"/>
  43
  44   <xs:element name="getResultResponse" type="tns:getResultResponse"/>
  45
  46   <xs:element name="getRunnerOptions" type="tns:getRunnerOptions"/>
  47
  48   <xs:element name="getRunnerOptionsResponse" type="tns:getRunnerOptionsResponse"/>
  49
  50   <xs:element name="limits" type="tns:limitsManager"/>
  51
  52   <xs:element name="presetAlign" type="tns:presetAlign"/>
  53
  54   <xs:element name="presetAlignResponse" type="tns:presetAlignResponse"/>
  55
  56   <xs:element name="presets" type="tns:presetManager"/>
  57
  58   <xs:element name="pullExecStatistics" type="tns:pullExecStatistics"/>
  59
  60   <xs:element name="pullExecStatisticsResponse" type="tns:pullExecStatisticsResponse"/>
  61
  62   <xs:element name="runnerConfig" type="tns:runnerConfig"/>
  63
  64   <xs:complexType name="getJobStatus">
  65     <xs:sequence>
  66       <xs:element name="jobId" type="xs:string" minOccurs="0"/>
  67     </xs:sequence>
  68   </xs:complexType>
  69
  70   <xs:complexType name="getJobStatusResponse">
  71     <xs:sequence>
  72       <xs:element name="return" type="tns:jobStatus" minOccurs="0"/>
  73     </xs:sequence>
  74   </xs:complexType>
  75
  76   <xs:complexType name="getRunnerOptions">
  77     <xs:sequence/>
  78   </xs:complexType>
  79
  80   <xs:complexType name="getRunnerOptionsResponse">
  81     <xs:sequence>
  82       <xs:element name="return" type="tns:runnerConfig" minOccurs="0"/>
  83     </xs:sequence>
  84   </xs:complexType>
  85
  86   <xs:complexType name="runnerConfig">
  87     <xs:sequence>
  88       <xs:element name="options" type="tns:option" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
  89       <xs:element name="parameters" type="tns:parameter" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
  90       <xs:element name="prmSeparator" type="xs:string" minOccurs="0"/>
  91       <xs:element name="runnerClassName" type="xs:string"/>
  92     </xs:sequence>
  93   </xs:complexType>
  94
  95   <xs:complexType name="option">
  96     <xs:sequence>
  97       <xs:element name="description" type="xs:string"/>
  98       <xs:element name="optionNames" type="xs:string" maxOccurs="unbounded"/>
  99       <xs:element name="name" type="xs:string"/>
 100       <xs:element name="furtherDetails" type="xs:anyURI" minOccurs="0"/>
 101       <xs:element name="defaultValue" type="xs:string" minOccurs="0"/>
 102     </xs:sequence>
 103     <xs:attribute name="isRequired" type="xs:boolean" use="required"/>
 104   </xs:complexType>
 105
 106   <xs:complexType name="parameter">
 107     <xs:complexContent>
 108       <xs:extension base="tns:option">
 109         <xs:sequence>
 110           <xs:element name="possibleValues" type="xs:string" minOccurs="0" maxOccurs="unbounded"/>
 111           <xs:element name="validValue" type="tns:valueConstrain" minOccurs="0"/>
 112         </xs:sequence>
 113       </xs:extension>
 114     </xs:complexContent>
 115   </xs:complexType>
 116
 117   <xs:complexType name="valueConstrain">
 118     <xs:sequence>
 119       <xs:element name="type" type="tns:type"/>
 120       <xs:element name="max" type="xs:string" minOccurs="0"/>
 121       <xs:element name="min" type="xs:string" minOccurs="0"/>
 122     </xs:sequence>
 123   </xs:complexType>
 124
 125   <xs:complexType name="getResult">
 126     <xs:sequence>
 127       <xs:element name="jobId" type="xs:string" minOccurs="0"/>
 128     </xs:sequence>
 129   </xs:complexType>
 130
 131   <xs:complexType name="getResultResponse">
 132     <xs:sequence>
 133       <xs:element name="return" type="tns:alignment" minOccurs="0"/>
 134     </xs:sequence>
 135   </xs:complexType>
 136
 137   <xs:complexType name="alignment" final="extension restriction">
 138     <xs:sequence>
 139       <xs:element name="metadata" type="tns:alignmentMetadata" minOccurs="0"/>
 140       <xs:element name="sequences" type="tns:fastaSequence" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
 141     </xs:sequence>
 142   </xs:complexType>
 143
 144   <xs:complexType name="alignmentMetadata">
 145     <xs:sequence>
 146       <xs:element name="program" type="tns:program" minOccurs="0"/>
 147       <xs:element name="gapchar" type="xs:unsignedShort"/>
 148     </xs:sequence>
 149   </xs:complexType>
 150
 151   <xs:complexType name="fastaSequence">
 152     <xs:sequence>
 153       <xs:element name="id" type="xs:string" minOccurs="0"/>
 154       <xs:element name="sequence" type="xs:string" minOccurs="0"/>
 155     </xs:sequence>
 156   </xs:complexType>
 157
 158   <xs:complexType name="ResultNotAvailableException">
 159     <xs:sequence>
 160       <xs:element name="message" type="xs:string" minOccurs="0"/>
 161     </xs:sequence>
 162   </xs:complexType>
 163
 164   <xs:complexType name="getPresets">
 165     <xs:sequence/>
 166   </xs:complexType>
 167
 168   <xs:complexType name="getPresetsResponse">
 169     <xs:sequence>
 170       <xs:element name="return" type="tns:presetManager" minOccurs="0"/>
 171     </xs:sequence>
 172   </xs:complexType>
 173
 174   <xs:complexType name="presetManager">
 175     <xs:sequence>
 176       <xs:element name="runnerClassName" type="xs:string"/>
 177       <xs:element name="preset" type="tns:preset" maxOccurs="unbounded"/>
 178     </xs:sequence>
 179   </xs:complexType>
 180
 181   <xs:complexType name="preset">
 182     <xs:sequence>
 183       <xs:element name="name" type="xs:string"/>
 184       <xs:element name="description" type="xs:string" minOccurs="0"/>
 185       <xs:element name="optlist" minOccurs="0">
 186         <xs:complexType>
 187           <xs:sequence>
 188             <xs:element name="option" type="xs:string" maxOccurs="unbounded"/>
 189           </xs:sequence>
 190         </xs:complexType>
 191       </xs:element>
 192     </xs:sequence>
 193   </xs:complexType>
 194
 195   <xs:complexType name="getLimits">
 196     <xs:sequence/>
 197   </xs:complexType>
 198
 199   <xs:complexType name="getLimitsResponse">
 200     <xs:sequence>
 201       <xs:element name="return" type="tns:limitsManager" minOccurs="0"/>
 202     </xs:sequence>
 203   </xs:complexType>
 204
 205   <xs:complexType name="limitsManager">
 206     <xs:sequence>
 207       <xs:element name="runnerClassName" type="xs:string" minOccurs="0"/>
 208       <xs:element name="limit" type="tns:limit" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
 209     </xs:sequence>
 210   </xs:complexType>
 211
 212   <xs:complexType name="limit">
 213     <xs:sequence>
 214       <xs:element name="preset" type="xs:string" minOccurs="0"/>
 215       <xs:element name="seqNumber" type="xs:int"/>
 216       <xs:element name="seqLength" type="xs:int"/>
 217     </xs:sequence>
 218     <xs:attribute name="isDefault" type="xs:boolean" use="required"/>
 219   </xs:complexType>
 220
 221   <xs:complexType name="getLimit">
 222     <xs:sequence>
 223       <xs:element name="presetName" type="xs:string" minOccurs="0"/>
 224     </xs:sequence>
 225   </xs:complexType>
 226
 227   <xs:complexType name="getLimitResponse">
 228     <xs:sequence>
 229       <xs:element name="return" type="tns:limit" minOccurs="0"/>
 230     </xs:sequence>
 231   </xs:complexType>
 232
 233   <xs:complexType name="cancelJob">
 234     <xs:sequence>
 235       <xs:element name="jobId" type="xs:string" minOccurs="0"/>
 236     </xs:sequence>
 237   </xs:complexType>
 238
 239   <xs:complexType name="cancelJobResponse">
 240     <xs:sequence>
 241       <xs:element name="return" type="xs:boolean"/>
 242     </xs:sequence>
 243   </xs:complexType>
 244
 245   <xs:complexType name="presetAlign">
 246     <xs:sequence>
 247       <xs:element name="fastaSequences" type="tns:fastaSequence" minOccurs="0" maxOccurs="unbounded"/>
 248       <xs:element name="preset" type="tns:preset" minOccurs="0"/>
 249     </xs:sequence>
 250   </xs:complexType>
 251
 252   <xs:complexType name="presetAlignResponse">
 253     <xs:sequence>
 254       <xs:element name="return" type="xs:string" minOccurs="0"/>
 255     </xs:sequence>
 256   </xs:complexType>
 257
 258   <xs:complexType name="UnsupportedRuntimeException">
 259     <xs:sequence>
 260       <xs:element name="message" type="xs:string" minOccurs="0"/>
 261     </xs:sequence>
 262   </xs:complexType>
 263
 264   <xs:complexType name="LimitExceededException">
 265     <xs:sequence>
 266       <xs:element name="actualNumberofSequences" type="xs:int"/>
 267       <xs:element name="message" type="xs:string" minOccurs="0"/>
 268       <xs:element name="numberOfSequencesAllowed" type="xs:int"/>
 269       <xs:element name="sequenceLenghtActual" type="xs:int"/>
 270       <xs:element name="sequenceLenghtAllowed" type="xs:int"/>
 271     </xs:sequence>
 272   </xs:complexType>
 273
 274   <xs:complexType name="JobSubmissionException">
 275     <xs:sequence>
 276       <xs:element name="message" type="xs:string" minOccurs="0"/>
 277     </xs:sequence>
 278   </xs:complexType>
 279
 280   <xs:complexType name="WrongParameterException">
 281     <xs:sequence>
 282       <xs:element name="message" type="xs:string" minOccurs="0"/>
 283     </xs:sequence>
 284   </xs:complexType>
 285
 286   <xs:complexType name="pullExecStatistics">
 287     <xs:sequence>
 288       <xs:element name="jobId" type="xs:string" minOccurs="0"/>
 289       <xs:element name="position" type="xs:long"/>
 290     </xs:sequence>
 291   </xs:complexType>
 292
 293   <xs:complexType name="pullExecStatisticsResponse">
 294     <xs:sequence>
 295       <xs:element name="return" type="tns:chunkHolder" minOccurs="0"/>
 296     </xs:sequence>
 297   </xs:complexType>
 298
 299   <xs:complexType name="chunkHolder">
 300     <xs:sequence>
 301       <xs:element name="chunk" type="xs:string" minOccurs="0"/>
 302       <xs:element name="position" type="xs:long"/>
 303     </xs:sequence>
 304   </xs:complexType>
 305
 306   <xs:complexType name="align">
 307     <xs:sequence>
 308       <xs:element name="fastaSequences" type="tns:fastaSequence" minOccurs="0" maxOccurs="unbounded"/>
 309     </xs:sequence>
 310   </xs:complexType>
 311
 312   <xs:complexType name="alignResponse">
 313     <xs:sequence>
 314       <xs:element name="return" type="xs:string" minOccurs="0"/>
 315     </xs:sequence>
 316   </xs:complexType>
 317
 318   <xs:complexType name="customAlign">
 319     <xs:sequence>
 320       <xs:element name="fastaSequences" type="tns:fastaSequence" minOccurs="0" maxOccurs="unbounded"/>
 321       <xs:element name="options" type="tns:option" minOccurs="0" maxOccurs="unbounded"/>
 322     </xs:sequence>
 323   </xs:complexType>
 324
 325   <xs:complexType name="customAlignResponse">
 326     <xs:sequence>
 327       <xs:element name="return" type="xs:string" minOccurs="0"/>
 328     </xs:sequence>
 329   </xs:complexType>
 330
 331   <xs:simpleType name="jobStatus">
 332     <xs:restriction base="xs:string">
 333       <xs:enumeration value="PENDING"/>
 334       <xs:enumeration value="RUNNING"/>
 335       <xs:enumeration value="CANCELLED"/>
 336       <xs:enumeration value="FINISHED"/>
 337       <xs:enumeration value="FAILED"/>
 338       <xs:enumeration value="UNDEFINED"/>
 339       <xs:enumeration value="STARTED"/>
 340       <xs:enumeration value="SUBMITTED"/>
 341       <xs:enumeration value="COLLECTED"/>
 342     </xs:restriction>
 343   </xs:simpleType>
 344
 345   <xs:simpleType name="type">
 346     <xs:restriction base="xs:string">
 347       <xs:enumeration value="Integer"/>
 348       <xs:enumeration value="Float"/>
 349     </xs:restriction>
 350   </xs:simpleType>
 351
 352   <xs:simpleType name="program">
 353     <xs:restriction base="xs:string">
 354       <xs:enumeration value="CLUSTAL"/>
 355       <xs:enumeration value="MAFFT"/>
 356       <xs:enumeration value="MUSCLE"/>
 357       <xs:enumeration value="Tcoffee"/>
 358       <xs:enumeration value="Probcons"/>
 359     </xs:restriction>
 360   </xs:simpleType>
 361 </xs:schema>
 362