website/full_javadoc/compbio/engine/client/Util.html

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   7 Util\r
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   9 \r
  10 <META NAME="date" CONTENT="2010-02-17">\r
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  18         parent.document.title="Util";\r
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  79   SUMMARY:&nbsp;NESTED&nbsp;|&nbsp;FIELD&nbsp;|&nbsp;<A HREF="#constructor_summary">CONSTR</A>&nbsp;|&nbsp;<A HREF="#method_summary">METHOD</A></FONT></TD>\r
  80 <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">\r
  81 DETAIL:&nbsp;FIELD&nbsp;|&nbsp;<A HREF="#constructor_detail">CONSTR</A>&nbsp;|&nbsp;<A HREF="#method_detail">METHOD</A></FONT></TD>\r
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  88 <!-- ======== START OF CLASS DATA ======== -->\r
  89 <H2>\r
  90 <FONT SIZE="-1">\r
  91 compbio.engine.client</FONT>\r
  92 <BR>\r
  93 Class Util</H2>\r
  94 <PRE>\r
  95 java.lang.Object\r
  96   <IMG SRC="../../../resources/inherit.gif" ALT="extended by "><B>compbio.engine.client.Util</B>\r
  97 </PRE>\r
  98 <HR>\r
  99 <DL>\r
 100 <DT><PRE>public final class <B>Util</B><DT>extends java.lang.Object</DL>\r
 101 </PRE>\r
 102 \r
 103 <P>\r
 104 <HR>\r
 105 \r
 106 <P>\r
 107 \r
 108 <!-- ======== CONSTRUCTOR SUMMARY ======== -->\r
 109 \r
 110 <A NAME="constructor_summary"><!-- --></A>\r
 111 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 112 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 113 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 114 <B>Constructor Summary</B></FONT></TH>\r
 115 </TR>\r
 116 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 117 <TD><CODE><B><A HREF="../../../compbio/engine/client/Util.html#Util()">Util</A></B>()</CODE>\r
 118 \r
 119 <BR>\r
 120 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 121 </TR>\r
 122 </TABLE>\r
 123 &nbsp;\r
 124 <!-- ========== METHOD SUMMARY =========== -->\r
 125 \r
 126 <A NAME="method_summary"><!-- --></A>\r
 127 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 128 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 129 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 130 <B>Method Summary</B></FONT></TH>\r
 131 </TR>\r
 132 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 133 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 134 <CODE>static&nbsp;java.lang.String</CODE></FONT></TD>\r
 135 <TD><CODE><B><A HREF="../../../compbio/engine/client/Util.html#convertToAbsolute(java.lang.String)">convertToAbsolute</A></B>(java.lang.String&nbsp;relativePath)</CODE>\r
 136 \r
 137 <BR>\r
 138 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 139 </TR>\r
 140 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 141 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 142 <CODE>static&nbsp;java.lang.String</CODE></FONT></TD>\r
 143 <TD><CODE><B><A HREF="../../../compbio/engine/client/Util.html#getCommand(compbio.engine.client.Executable.ExecProvider, java.lang.Class)">getCommand</A></B>(<A HREF="../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A>&nbsp;provider,\r
 144            java.lang.Class&lt;?&gt;&nbsp;clazz)</CODE>\r
 145 \r
 146 <BR>\r
 147 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 148 </TR>\r
 149 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 150 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 151 <CODE>static&nbsp;java.lang.String</CODE></FONT></TD>\r
 152 <TD><CODE><B><A HREF="../../../compbio/engine/client/Util.html#getExecProperty(java.lang.String, java.lang.Class)">getExecProperty</A></B>(java.lang.String&nbsp;propertySpec,\r
 153                 java.lang.Class&lt;?&gt;&nbsp;clazz)</CODE>\r
 154 \r
 155 <BR>\r
 156 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 157 </TR>\r
 158 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 159 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 160 <CODE>static&nbsp;java.lang.String</CODE></FONT></TD>\r
 161 <TD><CODE><B><A HREF="../../../compbio/engine/client/Util.html#getExecProperty(java.lang.String, compbio.engine.client.Executable)">getExecProperty</A></B>(java.lang.String&nbsp;propertySpec,\r
 162                 <A HREF="../../../compbio/engine/client/Executable.html" title="interface in compbio.engine.client">Executable</A>&lt;?&gt;&nbsp;exec)</CODE>\r
 163 \r
 164 <BR>\r
 165 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 166 </TR>\r
 167 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 168 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 169 <CODE>static&nbsp;java.lang.String</CODE></FONT></TD>\r
 170 <TD><CODE><B><A HREF="../../../compbio/engine/client/Util.html#getFullPath(java.lang.String, java.lang.String)">getFullPath</A></B>(java.lang.String&nbsp;workDirectory,\r
 171             java.lang.String&nbsp;fileName)</CODE>\r
 172 \r
 173 <BR>\r
 174 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 175 </TR>\r
 176 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 177 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 178 <CODE>static&nbsp;<A HREF="../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A></CODE></FONT></TD>\r
 179 <TD><CODE><B><A HREF="../../../compbio/engine/client/Util.html#getSupportedRuntimes(java.lang.Class)">getSupportedRuntimes</A></B>(java.lang.Class&lt;?&gt;&nbsp;clazz)</CODE>\r
 180 \r
 181 <BR>\r
 182 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 183 </TR>\r
 184 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 185 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 186 <CODE>static&nbsp;boolean</CODE></FONT></TD>\r
 187 <TD><CODE><B><A HREF="../../../compbio/engine/client/Util.html#isMarked(java.lang.String, compbio.metadata.JobStatus)">isMarked</A></B>(java.lang.String&nbsp;workDirectory,\r
 188          <A HREF="../../../compbio/metadata/JobStatus.html" title="enum in compbio.metadata">JobStatus</A>&nbsp;marker)</CODE>\r
 189 \r
 190 <BR>\r
 191 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 192 </TR>\r
 193 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 194 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 195 <CODE>static&nbsp;boolean</CODE></FONT></TD>\r
 196 <TD><CODE><B><A HREF="../../../compbio/engine/client/Util.html#isValidJobId(java.lang.String)">isValidJobId</A></B>(java.lang.String&nbsp;key)</CODE>\r
 197 \r
 198 <BR>\r
 199 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 200 </TR>\r
 201 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 202 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 203 <CODE>static&nbsp;<A HREF="../../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A>&lt;?&gt;</CODE></FONT></TD>\r
 204 <TD><CODE><B><A HREF="../../../compbio/engine/client/Util.html#loadExecutable(java.lang.String)">loadExecutable</A></B>(java.lang.String&nbsp;taskId)</CODE>\r
 205 \r
 206 <BR>\r
 207 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 208 </TR>\r
 209 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 210 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 211 <CODE>static&nbsp;java.util.Map&lt;java.lang.String,java.lang.String&gt;</CODE></FONT></TD>\r
 212 <TD><CODE><B><A HREF="../../../compbio/engine/client/Util.html#mergeEnvVariables(java.util.Map, java.util.Map)">mergeEnvVariables</A></B>(java.util.Map&lt;java.lang.String,java.lang.String&gt;&nbsp;sysEnvTobeModified,\r
 213                   java.util.Map&lt;java.lang.String,java.lang.String&gt;&nbsp;variables)</CODE>\r
 214 \r
 215 <BR>\r
 216 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 217 </TR>\r
 218 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 219 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 220 <CODE>static&nbsp;void</CODE></FONT></TD>\r
 221 <TD><CODE><B><A HREF="../../../compbio/engine/client/Util.html#writeFile(java.lang.String, java.lang.String, java.lang.String, boolean)">writeFile</A></B>(java.lang.String&nbsp;workDirectory,\r
 222           java.lang.String&nbsp;fileAndEventName,\r
 223           java.lang.String&nbsp;content,\r
 224           boolean&nbsp;override)</CODE>\r
 225 \r
 226 <BR>\r
 227 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 228 </TR>\r
 229 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 230 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 231 <CODE>static&nbsp;boolean</CODE></FONT></TD>\r
 232 <TD><CODE><B><A HREF="../../../compbio/engine/client/Util.html#writeMarker(java.lang.String, compbio.metadata.JobStatus)">writeMarker</A></B>(java.lang.String&nbsp;workDirectory,\r
 233             <A HREF="../../../compbio/metadata/JobStatus.html" title="enum in compbio.metadata">JobStatus</A>&nbsp;fileType)</CODE>\r
 234 \r
 235 <BR>\r
 236 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 237 </TR>\r
 238 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 239 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 240 <CODE>static&nbsp;void</CODE></FONT></TD>\r
 241 <TD><CODE><B><A HREF="../../../compbio/engine/client/Util.html#writeStatFile(java.lang.String, java.lang.String)">writeStatFile</A></B>(java.lang.String&nbsp;workDirectory,\r
 242               java.lang.String&nbsp;fileAndEventName)</CODE>\r
 243 \r
 244 <BR>\r
 245 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 246 </TR>\r
 247 </TABLE>\r
 248 &nbsp;<A NAME="methods_inherited_from_class_java.lang.Object"><!-- --></A>\r
 249 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 250 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">\r
 251 <TH ALIGN="left"><B>Methods inherited from class java.lang.Object</B></TH>\r
 252 </TR>\r
 253 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 254 <TD><CODE>equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</CODE></TD>\r
 255 </TR>\r
 256 </TABLE>\r
 257 &nbsp;\r
 258 <P>\r
 259 \r
 260 <!-- ========= CONSTRUCTOR DETAIL ======== -->\r
 261 \r
 262 <A NAME="constructor_detail"><!-- --></A>\r
 263 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 264 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 265 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">\r
 266 <B>Constructor Detail</B></FONT></TH>\r
 267 </TR>\r
 268 </TABLE>\r
 269 \r
 270 <A NAME="Util()"><!-- --></A><H3>\r
 271 Util</H3>\r
 272 <PRE>\r
 273 public <B>Util</B>()</PRE>\r
 274 <DL>\r
 275 </DL>\r
 276 \r
 277 <!-- ============ METHOD DETAIL ========== -->\r
 278 \r
 279 <A NAME="method_detail"><!-- --></A>\r
 280 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 281 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 282 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">\r
 283 <B>Method Detail</B></FONT></TH>\r
 284 </TR>\r
 285 </TABLE>\r
 286 \r
 287 <A NAME="isValidJobId(java.lang.String)"><!-- --></A><H3>\r
 288 isValidJobId</H3>\r
 289 <PRE>\r
 290 public static boolean <B>isValidJobId</B>(java.lang.String&nbsp;key)</PRE>\r
 291 <DL>\r
 292 <DD><DL>\r
 293 </DL>\r
 294 </DD>\r
 295 </DL>\r
 296 <HR>\r
 297 \r
 298 <A NAME="writeStatFile(java.lang.String, java.lang.String)"><!-- --></A><H3>\r
 299 writeStatFile</H3>\r
 300 <PRE>\r
 301 public static void <B>writeStatFile</B>(java.lang.String&nbsp;workDirectory,\r
 302                                  java.lang.String&nbsp;fileAndEventName)</PRE>\r
 303 <DL>\r
 304 <DD><DL>\r
 305 </DL>\r
 306 </DD>\r
 307 </DL>\r
 308 <HR>\r
 309 \r
 310 <A NAME="writeFile(java.lang.String, java.lang.String, java.lang.String, boolean)"><!-- --></A><H3>\r
 311 writeFile</H3>\r
 312 <PRE>\r
 313 public static void <B>writeFile</B>(java.lang.String&nbsp;workDirectory,\r
 314                              java.lang.String&nbsp;fileAndEventName,\r
 315                              java.lang.String&nbsp;content,\r
 316                              boolean&nbsp;override)</PRE>\r
 317 <DL>\r
 318 <DD><DL>\r
 319 </DL>\r
 320 </DD>\r
 321 </DL>\r
 322 <HR>\r
 323 \r
 324 <A NAME="writeMarker(java.lang.String, compbio.metadata.JobStatus)"><!-- --></A><H3>\r
 325 writeMarker</H3>\r
 326 <PRE>\r
 327 public static final boolean <B>writeMarker</B>(java.lang.String&nbsp;workDirectory,\r
 328                                         <A HREF="../../../compbio/metadata/JobStatus.html" title="enum in compbio.metadata">JobStatus</A>&nbsp;fileType)</PRE>\r
 329 <DL>\r
 330 <DD><DL>\r
 331 </DL>\r
 332 </DD>\r
 333 </DL>\r
 334 <HR>\r
 335 \r
 336 <A NAME="isMarked(java.lang.String, compbio.metadata.JobStatus)"><!-- --></A><H3>\r
 337 isMarked</H3>\r
 338 <PRE>\r
 339 public static boolean <B>isMarked</B>(java.lang.String&nbsp;workDirectory,\r
 340                                <A HREF="../../../compbio/metadata/JobStatus.html" title="enum in compbio.metadata">JobStatus</A>&nbsp;marker)</PRE>\r
 341 <DL>\r
 342 <DD><DL>\r
 343 </DL>\r
 344 </DD>\r
 345 </DL>\r
 346 <HR>\r
 347 \r
 348 <A NAME="mergeEnvVariables(java.util.Map, java.util.Map)"><!-- --></A><H3>\r
 349 mergeEnvVariables</H3>\r
 350 <PRE>\r
 351 public static java.util.Map&lt;java.lang.String,java.lang.String&gt; <B>mergeEnvVariables</B>(java.util.Map&lt;java.lang.String,java.lang.String&gt;&nbsp;sysEnvTobeModified,\r
 352                                                                                  java.util.Map&lt;java.lang.String,java.lang.String&gt;&nbsp;variables)</PRE>\r
 353 <DL>\r
 354 <DD><DL>\r
 355 </DL>\r
 356 </DD>\r
 357 </DL>\r
 358 <HR>\r
 359 \r
 360 <A NAME="convertToAbsolute(java.lang.String)"><!-- --></A><H3>\r
 361 convertToAbsolute</H3>\r
 362 <PRE>\r
 363 public static java.lang.String <B>convertToAbsolute</B>(java.lang.String&nbsp;relativePath)</PRE>\r
 364 <DL>\r
 365 <DD><DL>\r
 366 </DL>\r
 367 </DD>\r
 368 </DL>\r
 369 <HR>\r
 370 \r
 371 <A NAME="getExecProperty(java.lang.String, compbio.engine.client.Executable)"><!-- --></A><H3>\r
 372 getExecProperty</H3>\r
 373 <PRE>\r
 374 public static java.lang.String <B>getExecProperty</B>(java.lang.String&nbsp;propertySpec,\r
 375                                                <A HREF="../../../compbio/engine/client/Executable.html" title="interface in compbio.engine.client">Executable</A>&lt;?&gt;&nbsp;exec)</PRE>\r
 376 <DL>\r
 377 <DD><DL>\r
 378 </DL>\r
 379 </DD>\r
 380 </DL>\r
 381 <HR>\r
 382 \r
 383 <A NAME="getExecProperty(java.lang.String, java.lang.Class)"><!-- --></A><H3>\r
 384 getExecProperty</H3>\r
 385 <PRE>\r
 386 public static java.lang.String <B>getExecProperty</B>(java.lang.String&nbsp;propertySpec,\r
 387                                                java.lang.Class&lt;?&gt;&nbsp;clazz)</PRE>\r
 388 <DL>\r
 389 <DD><DL>\r
 390 </DL>\r
 391 </DD>\r
 392 </DL>\r
 393 <HR>\r
 394 \r
 395 <A NAME="getFullPath(java.lang.String, java.lang.String)"><!-- --></A><H3>\r
 396 getFullPath</H3>\r
 397 <PRE>\r
 398 public static java.lang.String <B>getFullPath</B>(java.lang.String&nbsp;workDirectory,\r
 399                                            java.lang.String&nbsp;fileName)</PRE>\r
 400 <DL>\r
 401 <DD><DL>\r
 402 </DL>\r
 403 </DD>\r
 404 </DL>\r
 405 <HR>\r
 406 \r
 407 <A NAME="getCommand(compbio.engine.client.Executable.ExecProvider, java.lang.Class)"><!-- --></A><H3>\r
 408 getCommand</H3>\r
 409 <PRE>\r
 410 public static java.lang.String <B>getCommand</B>(<A HREF="../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A>&nbsp;provider,\r
 411                                           java.lang.Class&lt;?&gt;&nbsp;clazz)</PRE>\r
 412 <DL>\r
 413 <DD><DL>\r
 414 </DL>\r
 415 </DD>\r
 416 </DL>\r
 417 <HR>\r
 418 \r
 419 <A NAME="getSupportedRuntimes(java.lang.Class)"><!-- --></A><H3>\r
 420 getSupportedRuntimes</H3>\r
 421 <PRE>\r
 422 public static <A HREF="../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A> <B>getSupportedRuntimes</B>(java.lang.Class&lt;?&gt;&nbsp;clazz)</PRE>\r
 423 <DL>\r
 424 <DD><DL>\r
 425 </DL>\r
 426 </DD>\r
 427 </DL>\r
 428 <HR>\r
 429 \r
 430 <A NAME="loadExecutable(java.lang.String)"><!-- --></A><H3>\r
 431 loadExecutable</H3>\r
 432 <PRE>\r
 433 public static <A HREF="../../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A>&lt;?&gt; <B>loadExecutable</B>(java.lang.String&nbsp;taskId)\r
 434                                               throws <A HREF="../../../compbio/metadata/ResultNotAvailableException.html" title="class in compbio.metadata">ResultNotAvailableException</A></PRE>\r
 435 <DL>\r
 436 <DD><DL>\r
 437 \r
 438 <DT><B>Throws:</B>\r
 439 <DD><CODE><A HREF="../../../compbio/metadata/ResultNotAvailableException.html" title="class in compbio.metadata">ResultNotAvailableException</A></CODE></DL>\r
 440 </DD>\r
 441 </DL>\r
 442 <!-- ========= END OF CLASS DATA ========= -->\r
 443 <HR>\r
 444 \r
 445 \r
 446 <!-- ======= START OF BOTTOM NAVBAR ====== -->\r
 447 <A NAME="navbar_bottom"><!-- --></A>\r
 448 <A HREF="#skip-navbar_bottom" title="Skip navigation links"></A>\r
 449 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">\r
 450 <TR>\r
 451 <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">\r
 452 <A NAME="navbar_bottom_firstrow"><!-- --></A>\r
 453 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">\r
 454   <TR ALIGN="center" VALIGN="top">\r
 455   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>\r
 456   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A>&nbsp;</TD>\r
 457   <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> &nbsp;<FONT CLASS="NavBarFont1Rev"><B>Class</B></FONT>&nbsp;</TD>\r
 458   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="class-use/Util.html"><FONT CLASS="NavBarFont1"><B>Use</B></FONT></A>&nbsp;</TD>\r
 459   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A>&nbsp;</TD>\r
 460   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A>&nbsp;</TD>\r
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 462   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A>&nbsp;</TD>\r
 463   </TR>\r
 464 </TABLE>\r
 465 </TD>\r
 466 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>\r
 467 </EM>\r
 468 </TD>\r
 469 </TR>\r
 470 \r
 471 <TR>\r
 472 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
 473 &nbsp;<A HREF="../../../compbio/engine/client/SkeletalExecutable.html" title="class in compbio.engine.client"><B>PREV CLASS</B></A>&nbsp;\r
 474 &nbsp;NEXT CLASS</FONT></TD>\r
 475 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
 476   <A HREF="../../../index.html?compbio/engine/client/Util.html" target="_top"><B>FRAMES</B></A>  &nbsp;\r
 477 &nbsp;<A HREF="Util.html" target="_top"><B>NO FRAMES</B></A>  &nbsp;\r
 478 &nbsp;<SCRIPT type="text/javascript">\r
 479   <!--\r
 480   if(window==top) {\r
 481     document.writeln('<A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>');\r
 482   }\r
 483   //-->\r
 484 </SCRIPT>\r
 485 <NOSCRIPT>\r
 486   <A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>\r
 487 </NOSCRIPT>\r
 488 \r
 489 \r
 490 </FONT></TD>\r
 491 </TR>\r
 492 <TR>\r
 493 <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">\r
 494   SUMMARY:&nbsp;NESTED&nbsp;|&nbsp;FIELD&nbsp;|&nbsp;<A HREF="#constructor_summary">CONSTR</A>&nbsp;|&nbsp;<A HREF="#method_summary">METHOD</A></FONT></TD>\r
 495 <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">\r
 496 DETAIL:&nbsp;FIELD&nbsp;|&nbsp;<A HREF="#constructor_detail">CONSTR</A>&nbsp;|&nbsp;<A HREF="#method_detail">METHOD</A></FONT></TD>\r
 497 </TR>\r
 498 </TABLE>\r
 499 <A NAME="skip-navbar_bottom"></A>\r
 500 <!-- ======== END OF BOTTOM NAVBAR ======= -->\r
 501 \r
 502 <HR>\r
 503 \r
 504 </BODY>\r
 505 </HTML>\r