website/full_javadoc/compbio/runner/_impl/package-summary.html

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  83 Package compbio.runner._impl\r
  84 </H2>\r
  85 \r
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  88 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
  89 <B>Class Summary</B></FONT></TH>\r
  90 </TR>\r
  91 <TR BGCOLOR="white" CLASS="TableRowColor">\r
  92 <TD WIDTH="15%"><B><A HREF="../../../compbio/runner/_impl/BlastAll.html" title="class in compbio.runner._impl">BlastAll</A></B></TD>\r
  93 <TD>&nbsp;</TD>\r
  94 </TR>\r
  95 <TR BGCOLOR="white" CLASS="TableRowColor">\r
  96 <TD WIDTH="15%"><B><A HREF="../../../compbio/runner/_impl/BlastParameters.html" title="class in compbio.runner._impl">BlastParameters</A></B></TD>\r
  97 <TD>Utility class for common Blast parameters</TD>\r
  98 </TR>\r
  99 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 100 <TD WIDTH="15%"><B><A HREF="../../../compbio/runner/_impl/Disembl.html" title="class in compbio.runner._impl">Disembl</A></B></TD>\r
 101 <TD>&nbsp;</TD>\r
 102 </TR>\r
 103 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 104 <TD WIDTH="15%"><B><A HREF="../../../compbio/runner/_impl/Environment.html" title="class in compbio.runner._impl">Environment</A></B></TD>\r
 105 <TD>This is utility class to encapsulate environmental variables like directory paths</TD>\r
 106 </TR>\r
 107 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 108 <TD WIDTH="15%"><B><A HREF="../../../compbio/runner/_impl/Mcl.html" title="class in compbio.runner._impl">Mcl</A></B></TD>\r
 109 <TD>&nbsp;</TD>\r
 110 </TR>\r
 111 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 112 <TD WIDTH="15%"><B><A HREF="../../../compbio/runner/_impl/NetNglyc.html" title="class in compbio.runner._impl">NetNglyc</A></B></TD>\r
 113 <TD>&nbsp;</TD>\r
 114 </TR>\r
 115 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 116 <TD WIDTH="15%"><B><A HREF="../../../compbio/runner/_impl/OB.html" title="class in compbio.runner._impl">OB</A></B></TD>\r
 117 <TD>TODO this needs fixing! Executable does not work</TD>\r
 118 </TR>\r
 119 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 120 <TD WIDTH="15%"><B><A HREF="../../../compbio/runner/_impl/PSIBlast.html" title="class in compbio.runner._impl">PSIBlast</A></B></TD>\r
 121 <TD>&nbsp;</TD>\r
 122 </TR>\r
 123 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 124 <TD WIDTH="15%"><B><A HREF="../../../compbio/runner/_impl/Ronn.html" title="class in compbio.runner._impl">Ronn</A></B></TD>\r
 125 <TD>&nbsp;</TD>\r
 126 </TR>\r
 127 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 128 <TD WIDTH="15%"><B><A HREF="../../../compbio/runner/_impl/RPSBlast.html" title="class in compbio.runner._impl">RPSBlast</A></B></TD>\r
 129 <TD>&nbsp;</TD>\r
 130 </TR>\r
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 132 <TD WIDTH="15%"><B><A HREF="../../../compbio/runner/_impl/Runners.html" title="class in compbio.runner._impl">Runners</A></B></TD>\r
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