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  40   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>\r
  41   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <FONT CLASS="NavBarFont1">Package</FONT>&nbsp;</TD>\r
  42   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <FONT CLASS="NavBarFont1">Class</FONT>&nbsp;</TD>\r
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  84 Hierarchy For All Packages</H2>\r
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  86 <DL>\r
  87 <DT><B>Package Hierarchies:</B><DD><A HREF="compbio/data/_structure/package-tree.html">compbio.data._structure</A>, <A HREF="compbio/data/msa/package-tree.html">compbio.data.msa</A>, <A HREF="compbio/data/msa/jaxws/package-tree.html">compbio.data.msa.jaxws</A>, <A HREF="compbio/data/sequence/package-tree.html">compbio.data.sequence</A>, <A HREF="compbio/engine/package-tree.html">compbio.engine</A>, <A HREF="compbio/engine/client/package-tree.html">compbio.engine.client</A>, <A HREF="compbio/engine/cluster/drmaa/package-tree.html">compbio.engine.cluster.drmaa</A>, <A HREF="compbio/engine/cluster/dundee/package-tree.html">compbio.engine.cluster.dundee</A>, <A HREF="compbio/engine/conf/package-tree.html">compbio.engine.conf</A>, <A HREF="compbio/engine/local/package-tree.html">compbio.engine.local</A>, <A HREF="compbio/metadata/package-tree.html">compbio.metadata</A>, <A HREF="compbio/pipeline/_jpred/package-tree.html">compbio.pipeline._jpred</A>, <A HREF="compbio/runner/package-tree.html">compbio.runner</A>, <A HREF="compbio/runner/_impl/package-tree.html">compbio.runner._impl</A>, <A HREF="compbio/runner/_jpred/package-tree.html">compbio.runner._jpred</A>, <A HREF="compbio/runner/msa/package-tree.html">compbio.runner.msa</A>, <A HREF="compbio/runner/psiblast/package-tree.html">compbio.runner.psiblast</A>, <A HREF="compbio/ws/client/package-tree.html">compbio.ws.client</A>, <A HREF="compbio/ws/server/package-tree.html">compbio.ws.server</A></DL>\r
  88 <HR>\r
  89 <H2>\r
  90 Class Hierarchy\r
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 127 <LI TYPE="circle">java.lang.Exception<UL>\r
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 133 </UL>\r
 134 <H2>\r
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 145 <H2>\r
 146 Enum Hierarchy\r
 147 </H2>\r
 148 <UL>\r
 149 <LI TYPE="circle">java.lang.Object<UL>\r
 150 <LI TYPE="circle">java.lang.Enum&lt;E&gt; (implements java.lang.Comparable&lt;T&gt;, java.io.Serializable)\r
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 153 </UL>\r
 154 </UL>\r
 155 <HR>\r
 156 \r
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 168   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <FONT CLASS="NavBarFont1">Package</FONT>&nbsp;</TD>\r
 169   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <FONT CLASS="NavBarFont1">Class</FONT>&nbsp;</TD>\r
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