wsbuild.xml

   1 <?xml version="1.0" encoding="UTF-8"?>\r
   2 \r
   3 <project default="build-server" name="compbio-ws" basedir=".">\r
   4 \r
   5         <!-- java -->\r
   6         <property name="classes" location="${basedir}/WEB-INF/classes" />\r
   7         <property name="lib.path" location="${basedir}/WEB-INF/lib" />\r
   8 \r
   9         <path id="classes.path">\r
  10                 <pathelement location="${classes}" />\r
  11         </path>\r
  12 \r
  13         <!-- add libraries -->\r
  14         <path id="project.classpath">\r
  15                 <fileset dir="${lib.path}">\r
  16                         <include name="*.jar" />\r
  17                 </fileset>\r
  18         </path>\r
  19 \r
  20         <property name="wsdl.dir" location="${basedir}/webservices/compbio/ws/server/resource" />\r
  21         <property name="jpred.wsdl" location="${wsdl.dir}/JpredWS.wsdl" />\r
  22         <property name="aacon.wsdl" location="${wsdl.dir}/AAConWS.wsdl" />\r
  23         <property name="clustal.wsdl" location="${wsdl.dir}/ClustalWS.wsdl" />\r
  24         <property name="muscle.wsdl" location="${wsdl.dir}/MuscleWS.wsdl" />\r
  25         <property name="tcoffee.wsdl" location="${wsdl.dir}/TcoffeeWS.wsdl" />\r
  26         <property name="mafft.wsdl" location="${wsdl.dir}/MafftWS.wsdl" />\r
  27         <property name="disembl.wsdl" location="${wsdl.dir}/DisemblWS.wsdl" />\r
  28         <property name="globplot.wsdl" location="${wsdl.dir}/GlobPlotWS.wsdl" />\r
  29         <property name="iupred.wsdl" location="${wsdl.dir}/IUPredWS.wsdl" />\r
  30         <property name="jronn.wsdl" location="${wsdl.dir}/JronnWS.wsdl" />\r
  31         <property name="registry.wsdl" location="${wsdl.dir}/RegistryWS.wsdl" />\r
  32         <property name="rnaalifold.wsdl" location="${wsdl.dir}/RNAalifold.wsdl" />  \r
  33 \r
  34         <taskdef name="wsgen" onerror="report" classname="com.sun.tools.ws.ant.WsGen">\r
  35                 <classpath refid="project.classpath" />\r
  36         </taskdef>\r
  37 \r
  38         <target name="build-server">\r
  39                 <!-- TODO this runs file from Eclipse, but with Ant only this need to depends on clean and build! -->\r
  40                 <property name="server.artifacts.dir" location="${basedir}/webservices/compbio/ws/server/jaxws/" />\r
  41 \r
  42                 <mkdir dir="${server.artifacts.dir}" />\r
  43                 <mkdir dir="${wsdl.dir}" />\r
  44                 <delete quiet="false" verbose="true" failonerror="false">\r
  45                         <fileset dir="${server.artifacts.dir}">\r
  46                                 <include name="*.java" />\r
  47                         </fileset>\r
  48                         <fileset dir="${wsdl.dir}">\r
  49                         </fileset>\r
  50                 </delete>\r
  51 \r
  52                 <!-- destdir - Where to put generated classes -->\r
  53                 <!-- sourcedestdir -  Where to put generated source files -->\r
  54                 <!-- resourcedestdir - Where to put generated source files -->\r
  55                 <wsgen sei="compbio.ws.server.JpredWS"\r
  56                                 sourcedestdir="${basedir}/webservices"\r
  57                                 destdir="${classes}"\r
  58                                 resourcedestdir="${wsdl.dir}"\r
  59                                 keep="true"\r
  60                                 genwsdl="true"\r
  61                                 extension="false"\r
  62                                 xendorsed="true"\r
  63                                 verbose="true">\r
  64                                 <classpath refid="classes.path" />\r
  65                                 <classpath refid="project.classpath" />\r
  66                 </wsgen>\r
  67                 <wsgen sei="compbio.ws.server.AAConWS"\r
  68                                 sourcedestdir="${basedir}/webservices"\r
  69                                 destdir="${classes}"\r
  70                                 resourcedestdir="${wsdl.dir}"\r
  71                                 keep="true"\r
  72                                 genwsdl="true"\r
  73                                 extension="false"\r
  74                                 xendorsed="true"\r
  75                                 verbose="true">\r
  76                                 <classpath refid="classes.path" />\r
  77                                 <classpath refid="project.classpath" />\r
  78                 </wsgen>\r
  79                 <wsgen sei="compbio.ws.server.ClustalWS"\r
  80                                 sourcedestdir="${basedir}/webservices"\r
  81                                 destdir="${classes}"\r
  82                                 resourcedestdir="${wsdl.dir}"\r
  83                                 keep="true"\r
  84                                 genwsdl="true"\r
  85                                 extension="false"\r
  86                                 xendorsed="true"\r
  87                                 verbose="true">\r
  88                                 <classpath refid="classes.path" />\r
  89                                 <classpath refid="project.classpath" />\r
  90                 </wsgen>\r
  91                 <wsgen sei="compbio.ws.server.MuscleWS"\r
  92                                 sourcedestdir="${basedir}/webservices"\r
  93                                 destdir="${classes}"\r
  94                                 resourcedestdir="${wsdl.dir}"\r
  95                                 keep="true"\r
  96                                 genwsdl="true"\r
  97                                 extension="false"\r
  98                                 xendorsed="true"\r
  99                                 verbose="true">\r
 100                                 <classpath refid="classes.path" />\r
 101                                 <classpath refid="project.classpath" />\r
 102                 </wsgen>\r
 103                 <wsgen sei="compbio.ws.server.MafftWS"\r
 104                                 sourcedestdir="${basedir}/webservices"\r
 105                                 destdir="${classes}"\r
 106                                 resourcedestdir="${wsdl.dir}"\r
 107                                 keep="true"\r
 108                                 genwsdl="true"\r
 109                                 extension="false"\r
 110                                 xendorsed="true"\r
 111                                 verbose="true">\r
 112                                 <classpath refid="classes.path" />\r
 113                                 <classpath refid="project.classpath" />\r
 114                 </wsgen>\r
 115                 <wsgen sei="compbio.ws.server.TcoffeeWS"\r
 116                                 sourcedestdir="${basedir}/webservices"\r
 117                                 destdir="${classes}"\r
 118                                 resourcedestdir="${wsdl.dir}"\r
 119                                 keep="true"\r
 120                                 genwsdl="true"\r
 121                                 extension="false"\r
 122                                 xendorsed="true"\r
 123                                 verbose="true">\r
 124                                 <classpath refid="classes.path" />\r
 125                                 <classpath refid="project.classpath" />\r
 126                 </wsgen>\r
 127                 <wsgen sei="compbio.ws.server.DisemblWS"\r
 128                                 sourcedestdir="${basedir}/webservices"\r
 129                                 destdir="${classes}"\r
 130                                 resourcedestdir="${wsdl.dir}"\r
 131                                 keep="true"\r
 132                                 genwsdl="true"\r
 133                                 extension="false"\r
 134                                 xendorsed="true"\r
 135                                 verbose="true">\r
 136                                 <classpath refid="classes.path" />\r
 137                                 <classpath refid="project.classpath" />\r
 138                 </wsgen>\r
 139                 <wsgen sei="compbio.ws.server.GlobPlotWS"\r
 140                                 sourcedestdir="${basedir}/webservices"\r
 141                                 destdir="${classes}"\r
 142                                 resourcedestdir="${wsdl.dir}"\r
 143                                 keep="true"\r
 144                                 genwsdl="true"\r
 145                                 extension="false"\r
 146                                 xendorsed="true"\r
 147                                 verbose="true">\r
 148                                 <classpath refid="classes.path" />\r
 149                                 <classpath refid="project.classpath" />\r
 150                 </wsgen>\r
 151                 <wsgen sei="compbio.ws.server.JronnWS"\r
 152                                 sourcedestdir="${basedir}/webservices"\r
 153                                 destdir="${classes}"\r
 154                                 resourcedestdir="${wsdl.dir}"\r
 155                                 keep="true"\r
 156                                 genwsdl="true"\r
 157                                 extension="false"\r
 158                                 xendorsed="true"\r
 159                                 verbose="true">\r
 160                                 <classpath refid="classes.path" />\r
 161                                 <classpath refid="project.classpath" />\r
 162                 </wsgen>\r
 163                 <wsgen sei="compbio.ws.server.IUPredWS"\r
 164                                 sourcedestdir="${basedir}/webservices"\r
 165                                 destdir="${classes}"\r
 166                                 resourcedestdir="${wsdl.dir}"\r
 167                                 keep="true"\r
 168                                 genwsdl="true"\r
 169                                 extension="false"\r
 170                                 xendorsed="true"\r
 171                                 verbose="true">\r
 172                                 <classpath refid="classes.path" />\r
 173                                 <classpath refid="project.classpath" />\r
 174                 </wsgen>\r
 175                 <wsgen sei="compbio.ws.server.RegistryWS"\r
 176                                 sourcedestdir="${basedir}/webservices"\r
 177                                 destdir="${classes}"\r
 178                                 resourcedestdir="${wsdl.dir}"\r
 179                                 keep="true"\r
 180                                 genwsdl="true"\r
 181                                 extension="false"\r
 182                                 xendorsed="true"\r
 183                                 verbose="true">\r
 184                                 <classpath refid="classes.path" />\r
 185                                 <classpath refid="project.classpath" />\r
 186                 </wsgen>\r
 187                 <wsgen sei="compbio.ws.server.RNAalifoldWS"\r
 188                                 sourcedestdir="${basedir}/webservices"\r
 189                                 destdir="${classes}"\r
 190                                 resourcedestdir="${wsdl.dir}"\r
 191                                 keep="true" genwsdl="true"\r
 192                                 extension="false"\r
 193                                 xendorsed="true"\r
 194                                 verbose="true">\r
 195                                 <classpath refid="classes.path" />\r
 196                                 <classpath refid="project.classpath" />\r
 197                 </wsgen>\r
 198         </target>\r
 199 \r
 200         <taskdef name="wsimport" classname="com.sun.tools.ws.ant.WsImport">\r
 201                 <classpath refid="project.classpath" />\r
 202         </taskdef>\r
 203 \r
 204         <target name="build-clients">\r
 205                         <property name="client.artifacts.dir" location="${basedir}/webservices/compbio/ws/client/stub" />\r
 206 \r
 207                         <mkdir dir="${client.artifacts.dir}" />\r
 208                         <delete quiet="false" verbose="true" failonerror="true">\r
 209                                 <fileset dir="${client.artifacts.dir}">\r
 210                                         <include name="*.java" />\r
 211                                 </fileset>\r
 212                         </delete>\r
 213                         <wsimport wsdl="${clustal.wsdl}"\r
 214                                 sourcedestdir="${basedir}/webservices/"\r
 215                                 keep="true" extension="false"\r
 216                                 verbose="true" xnocompile="true" xendorsed="true"\r
 217                                 package="compbio.ws.client.stub" target="2.1"\r
 218                                 quiet="false">\r
 219                         </wsimport>\r
 220                         <wsimport wsdl="${muscle.wsdl}"\r
 221                                 sourcedestdir="${basedir}/webservices/"\r
 222                                 keep="true" extension="false"\r
 223                                 verbose="true" xnocompile="true" xendorsed="true"\r
 224                                 package="compbio.ws.client.stub" target="2.1"\r
 225                                 quiet="false">\r
 226                         </wsimport>\r
 227                         <wsimport wsdl="${mafft.wsdl}"\r
 228                                 sourcedestdir="${basedir}/webservices/"\r
 229                                 keep="true" extension="false"\r
 230                                 verbose="true" xnocompile="true" xendorsed="true"\r
 231                                 package="compbio.ws.client.stub" target="2.1"\r
 232                                 quiet="false">\r
 233                         </wsimport>\r
 234                         <wsimport wsdl="${tcoffee.wsdl}"\r
 235                                 sourcedestdir="${basedir}/webservices/"\r
 236                                 keep="true" extension="false"\r
 237                                 verbose="true" xnocompile="true" xendorsed="true"\r
 238                                 package="compbio.ws.client.stub" target="2.1"\r
 239                                 quiet="false">\r
 240                         </wsimport>\r
 241                         <wsimport wsdl="${iupred.wsdl}"\r
 242                                 sourcedestdir="${basedir}/webservices/"\r
 243                                 keep="true" extension="false"\r
 244                                 verbose="true" xnocompile="true" xendorsed="true"\r
 245                                 package="compbio.ws.client.stub" target="2.1"\r
 246                                 quiet="false">\r
 247                         </wsimport>\r
 248                         <wsimport wsdl="${registry.wsdl}"\r
 249                                 sourcedestdir="${basedir}/webservices/"\r
 250                                 keep="true" extension="false"\r
 251                                 verbose="true" xnocompile="true" xendorsed="true"\r
 252                                 package="compbio.ws.client.stub" target="2.1"\r
 253                                 quiet="false">\r
 254                         </wsimport>\r
 255                         <wsimport wsdl="${rnaalifold.wsdl}"\r
 256                                 sourcedestdir="${basedir}/webservices/"\r
 257                                 keep="true" extension="false"\r
 258                                 verbose="true" xnocompile="true" xendorsed="true"\r
 259                                 package="compbio.ws.client.stub" target="2.1"\r
 260                                 quiet="false">\r
 261                         </wsimport>\r
 262                         \r
 263                 </target>\r
 264 \r
 265         <!-- \r
 266         <target name="Build artifacts from schema" description="Test task to generate JaxB commons annotated data classes DOES NOT REALLY WORK">\r
 267                 <taskdef name="xjc" classname="com.sun.tools.xjc.XJCTask">\r
 268                         <classpath refid="project.classpath" />\r
 269                 </taskdef>\r
 270                 <mkdir dir="${basedir}/src/test" />\r
 271                 <xjc schema="${wsdl.dir}/SyncMsaWS_schema1.xsd" destdir="${basedir}/src/test">\r
 272                         <arg value="-Xcommons-lang" />\r
 273                 \r
 274                         <produces dir="${basedir}/src/test" />\r
 275                         <classpath refid="classes.path" />\r
 276                         <classpath>\r
 277                                         <fileset dir="${basedir}/lib">\r
 278                                                  //JAXB2 Basics library\r
 279                                                 <include name="jaxb2-basics-*.jar"/>\r
 280                                                  // JAXB2 Basics library dependencies\r
 281                                                 <include name="jaxb2-basics-runtime-*.jar"/>\r
 282                                                 <include name="jaxb2-basics-tools-*.jar"/>\r
 283                                                 <include name="commons-beanutils-*.jar"/>\r
 284                                                 <include name="commons-lang-*.jar"/>\r
 285                                                 <include name="commons-logging-*.jar"/>\r
 286                                         </fileset>\r
 287                                 </classpath>\r
 288                 </xjc>\r
 289         </target>\r
 290 \r
 291                                         -Xequals\r
 292                                         -XhashCode\r
 293                                         -Xcopyable\r
 294                                         -Xmergeable\r
 295 \r
 296         <target name="build-Clustal-client-from-live-server">\r
 297 \r
 298                 <wsimport wsdl="http://localhost:7979/ClustalWS?wsdl"\r
 299                         sourcedestdir="${basedir}/webservices/"\r
 300                         keep="true"\r
 301                         extension="false"\r
 302                         verbose="true"\r
 303                         xnocompile="true"\r
 304                         package="compbio.ws.client.stub"\r
 305                         quiet="false">\r
 306                 </wsimport>\r
 307         </target>\r
 308 \r
 309         <target name="build-Muscle-client-from-live-server">\r
 310                 <wsimport wsdl="http://localhost:7979/MuscleWS?wsdl"\r
 311                                         sourcedestdir="${basedir}/webservices/"\r
 312                                         keep="true"\r
 313                                         extension="false"\r
 314                                         verbose="true"\r
 315                                         xnocompile="true"\r
 316                                         package="compbio.ws.client.stub"\r
 317                                         quiet="false">\r
 318                 </wsimport>\r
 319         </target>\r
 320 \r
 321 \r
 322         <target name="build-client-jar" description="Pack WS client into a single jar THIS IS EXAMPLE ONLY!">\r
 323                 <echo>Jar file: wsclient</echo>\r
 324                 <delete file="${basedir}/resources/wsclient.jar">\r
 325                 </delete>\r
 326                 <jar jarfile="${basedir}/resources/wsclient.jar">\r
 327                         <fileset dir="${basedir}/WebContent/WEB-INF/classes/" includes="org/pimslims/ws/client/**/*.class" />\r
 328                         <fileset dir="${classes}" includes="org/pimslims/sec/*,org/pimslims/lab/Util.class" />\r
 329                         <zipfileset excludes="META-INF/*.SF" src="D:/workspace/current-pims-web/WebContent/WEB-INF/lib/webservices-rt.jar" />\r
 330                         <manifest>\r
 331                                 <attribute name="Built-By" value="${user.name}" />\r
 332                                 <attribute name="Main-Class" value="org.pimslims.ws.client.FileUploadClient" />\r
 333                                 <attribute name="Class-Path" value="." />\r
 334                                 <attribute name="Implementation-Title" value="PIMS File Upload Web Service Client" />\r
 335                                 <attribute name="Implementation-Vendor" value="The PIMS team" />\r
 336                                 <attribute name="Implementation-URL" value="http://www.pims-lims.org" />\r
 337                         </manifest>\r
 338                 </jar>\r
 339         </target>\r
 340 \r
 341 \r
 342         <target name="run-client-jar" description="THIS IS EXAMPLE ONLY">\r
 343                 <java jar="${basedir}/resources/wsclient.jar" fork="true" failonerror="true" maxmemory="256m">\r
 344                         <arg value="C:/Documents and Settings/pvt43/Desktop/Leeds Sequencing/Copy of Files to up load" />\r
 345                 </java>\r
 346         </target>\r
 347 \r
 348         <target name="run-client-class" description="THIS IS EXAMPLE ONLY">\r
 349                 <java classname="org.pimslims.ws.client.FileUploadClient" fork="true" failonerror="true" maxmemory="256m">\r
 350                         <classpath refid="project.classpath" />\r
 351                         <classpath refid="instrument.classpath" />\r
 352                 </java>\r
 353         </target>\r
 354 -->\r
 355 </project>\r
 356 \r