Update for web services stubs

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4566 e3abac25-378b-4346-85de-24260fe3988d

diff --git a/webservices/compbio/data/msa/jaxws/GetServiceCategories.java b/webservices/compbio/data/msa/jaxws/GetServiceCategories.java
new file mode 100644 (file)
index 0000000..0c77d6a
--- /dev/null
+++ b/webservices/compbio/data/msa/jaxws/GetServiceCategories.java
@@ -0,0 +1,15 @@
+\r
+package compbio.data.msa.jaxws;\r
+\r
+import javax.xml.bind.annotation.XmlAccessType;\r
+import javax.xml.bind.annotation.XmlAccessorType;\r
+import javax.xml.bind.annotation.XmlRootElement;\r
+import javax.xml.bind.annotation.XmlType;\r
+\r
+@XmlRootElement(name = "getServiceCategories", namespace = "http://msa.data.compbio/01/12/2010/")\r
+@XmlAccessorType(XmlAccessType.FIELD)\r
+@XmlType(name = "getServiceCategories", namespace = "http://msa.data.compbio/01/12/2010/")\r
+public class GetServiceCategories {\r
+\r
+\r
+}\r

diff --git a/webservices/compbio/data/msa/jaxws/GetServiceCategoriesResponse.java b/webservices/compbio/data/msa/jaxws/GetServiceCategoriesResponse.java
new file mode 100644 (file)
index 0000000..536dabc
--- /dev/null
+++ b/webservices/compbio/data/msa/jaxws/GetServiceCategoriesResponse.java
@@ -0,0 +1,37 @@
+\r
+package compbio.data.msa.jaxws;\r
+\r
+import java.util.Set;\r
+import javax.xml.bind.annotation.XmlAccessType;\r
+import javax.xml.bind.annotation.XmlAccessorType;\r
+import javax.xml.bind.annotation.XmlElement;\r
+import javax.xml.bind.annotation.XmlRootElement;\r
+import javax.xml.bind.annotation.XmlType;\r
+\r
+@XmlRootElement(name = "getServiceCategoriesResponse", namespace = "http://msa.data.compbio/01/12/2010/")\r
+@XmlAccessorType(XmlAccessType.FIELD)\r
+@XmlType(name = "getServiceCategoriesResponse", namespace = "http://msa.data.compbio/01/12/2010/")\r
+public class GetServiceCategoriesResponse {\r
+\r
+    @XmlElement(name = "return", namespace = "")\r
+    private Set<compbio.ws.server.Category> _return;\r
+\r
+    /**\r
+     * \r
+     * @return\r
+     *     returns Set<Category>\r
+     */\r
+    public Set<compbio.ws.server.Category> getReturn() {\r
+        return this._return;\r
+    }\r
+\r
+    /**\r
+     * \r
+     * @param _return\r
+     *     the value for the _return property\r
+     */\r
+    public void setReturn(Set<compbio.ws.server.Category> _return) {\r
+        this._return = _return;\r
+    }\r
+\r
+}\r

diff --git a/webservices/compbio/data/msa/jaxws/GetServiceDescription.java b/webservices/compbio/data/msa/jaxws/GetServiceDescription.java
new file mode 100644 (file)
index 0000000..d55a43b
--- /dev/null
+++ b/webservices/compbio/data/msa/jaxws/GetServiceDescription.java
@@ -0,0 +1,36 @@
+\r
+package compbio.data.msa.jaxws;\r
+\r
+import javax.xml.bind.annotation.XmlAccessType;\r
+import javax.xml.bind.annotation.XmlAccessorType;\r
+import javax.xml.bind.annotation.XmlElement;\r
+import javax.xml.bind.annotation.XmlRootElement;\r
+import javax.xml.bind.annotation.XmlType;\r
+\r
+@XmlRootElement(name = "getServiceDescription", namespace = "http://msa.data.compbio/01/12/2010/")\r
+@XmlAccessorType(XmlAccessType.FIELD)\r
+@XmlType(name = "getServiceDescription", namespace = "http://msa.data.compbio/01/12/2010/")\r
+public class GetServiceDescription {\r
+\r
+    @XmlElement(name = "arg0", namespace = "")\r
+    private compbio.ws.client.Services arg0;\r
+\r
+    /**\r
+     * \r
+     * @return\r
+     *     returns Services\r
+     */\r
+    public compbio.ws.client.Services getArg0() {\r
+        return this.arg0;\r
+    }\r
+\r
+    /**\r
+     * \r
+     * @param arg0\r
+     *     the value for the arg0 property\r
+     */\r
+    public void setArg0(compbio.ws.client.Services arg0) {\r
+        this.arg0 = arg0;\r
+    }\r
+\r
+}\r

diff --git a/webservices/compbio/data/msa/jaxws/GetServiceDescriptionResponse.java b/webservices/compbio/data/msa/jaxws/GetServiceDescriptionResponse.java
new file mode 100644 (file)
index 0000000..42a76ad
--- /dev/null
+++ b/webservices/compbio/data/msa/jaxws/GetServiceDescriptionResponse.java
@@ -0,0 +1,36 @@
+\r
+package compbio.data.msa.jaxws;\r
+\r
+import javax.xml.bind.annotation.XmlAccessType;\r
+import javax.xml.bind.annotation.XmlAccessorType;\r
+import javax.xml.bind.annotation.XmlElement;\r
+import javax.xml.bind.annotation.XmlRootElement;\r
+import javax.xml.bind.annotation.XmlType;\r
+\r
+@XmlRootElement(name = "getServiceDescriptionResponse", namespace = "http://msa.data.compbio/01/12/2010/")\r
+@XmlAccessorType(XmlAccessType.FIELD)\r
+@XmlType(name = "getServiceDescriptionResponse", namespace = "http://msa.data.compbio/01/12/2010/")\r
+public class GetServiceDescriptionResponse {\r
+\r
+    @XmlElement(name = "return", namespace = "")\r
+    private String _return;\r
+\r
+    /**\r
+     * \r
+     * @return\r
+     *     returns String\r
+     */\r
+    public String getReturn() {\r
+        return this._return;\r
+    }\r
+\r
+    /**\r
+     * \r
+     * @param _return\r
+     *     the value for the _return property\r
+     */\r
+    public void setReturn(String _return) {\r
+        this._return = _return;\r
+    }\r
+\r
+}\r

diff --git a/webservices/compbio/ws/client/Services.java b/webservices/compbio/ws/client/Services.java
index 3616e1b..2ffafb6 100644 (file)
--- a/webservices/compbio/ws/client/Services.java
+++ b/webservices/compbio/ws/client/Services.java
@@ -21,6 +21,8 @@ package compbio.ws.client;
 import java.net.URL;\r
 import java.util.Set;\r
 \r
 import java.net.URL;\r
 import java.util.Set;\r
 \r

+import javax.xml.bind.annotation.XmlAccessType;\r
+import javax.xml.bind.annotation.XmlAccessorType;\r

 import javax.xml.namespace.QName;\r
 import javax.xml.ws.Service;\r
 \r
 import javax.xml.namespace.QName;\r
 import javax.xml.ws.Service;\r
 \r

@@ -187,6 +189,7 @@ public enum Services {
                                        + "Parallelization of the MAFFT multiple sequence alignment program. ",\r
                        "6.8.57", "http://mafft.cbrc.jp/alignment/software/").toString();;\r
 \r
                                        + "Parallelization of the MAFFT multiple sequence alignment program. ",\r
                        "6.8.57", "http://mafft.cbrc.jp/alignment/software/").toString();;\r
 \r

+       @XmlAccessorType(XmlAccessType.FIELD)\r

        static class ServiceInfo {\r
                Services service;\r
                String reference;\r
        static class ServiceInfo {\r
                Services service;\r
                String reference;\r

@@ -195,6 +198,9 @@ public enum Services {
                final static String jabaws_version = "2.0";\r
                final static String line_delimiter = "\n";\r
 \r
                final static String jabaws_version = "2.0";\r
                final static String line_delimiter = "\n";\r
 \r

+               private ServiceInfo() {\r
+                       // Default constructor for JAXB\r
+               }\r

                private ServiceInfo(Services service, String reference, String version,\r
                                String moreinfo) {\r
                        this.service = service;\r
                private ServiceInfo(Services service, String reference, String version,\r
                                String moreinfo) {\r
                        this.service = service;\r

diff --git a/webservices/compbio/ws/server/Category.java b/webservices/compbio/ws/server/Category.java
index f01ad18..5e164c4 100644 (file)
--- a/webservices/compbio/ws/server/Category.java
+++ b/webservices/compbio/ws/server/Category.java
@@ -4,6 +4,9 @@ import java.util.HashSet;
 import java.util.Set;\r
 import java.util.TreeSet;\r
 \r
 import java.util.Set;\r
 import java.util.TreeSet;\r
 \r

+import javax.xml.bind.annotation.XmlAccessType;\r
+import javax.xml.bind.annotation.XmlAccessorType;\r
+\r

 import compbio.ws.client.Services;\r
 \r
 /**\r
 import compbio.ws.client.Services;\r
 \r
 /**\r

@@ -17,6 +20,7 @@ import compbio.ws.client.Services;
  * @author pvtroshin\r
  * @version 1.0 September 2011\r
  */\r
  * @author pvtroshin\r
  * @version 1.0 September 2011\r
  */\r

+@XmlAccessorType(XmlAccessType.FIELD)\r

 public class Category {\r
        /*\r
         * TODO refactor initialization and constrains into separate classes if\r
 public class Category {\r
        /*\r
         * TODO refactor initialization and constrains into separate classes if\r

@@ -38,6 +42,10 @@ public class Category {
                this.services = services;\r
        }\r
 \r
                this.services = services;\r
        }\r
 \r

+       private Category() {\r
+               // Default constructor for JAXB\r
+       }\r
+\r

        Set<Services> getServices() {\r
                return new TreeSet<Services>(services);\r
        }\r
        Set<Services> getServices() {\r
                return new TreeSet<Services>(services);\r
        }\r

diff --git a/webservices/compbio/ws/server/resource/AAConWS.wsdl b/webservices/compbio/ws/server/resource/AAConWS.wsdl
index 772fca7..b02eaf9 100644 (file)
--- a/webservices/compbio/ws/server/resource/AAConWS.wsdl
+++ b/webservices/compbio/ws/server/resource/AAConWS.wsdl
@@ -6,6 +6,15 @@
       <xsd:import namespace="http://msa.data.compbio/01/12/2010/" schemaLocation="AAConWS_schema1.xsd"/>
     </xsd:schema>
   </types>
       <xsd:import namespace="http://msa.data.compbio/01/12/2010/" schemaLocation="AAConWS_schema1.xsd"/>
     </xsd:schema>
   </types>

+  <message name="getAnnotation">
+    <part name="parameters" element="tns:getAnnotation"/>
+  </message>
+  <message name="getAnnotationResponse">
+    <part name="parameters" element="tns:getAnnotationResponse"/>
+  </message>
+  <message name="ResultNotAvailableException">
+    <part name="fault" element="tns:ResultNotAvailableException"/>
+  </message>

   <message name="analize">
     <part name="parameters" element="tns:analize"/>
   </message>
   <message name="analize">
     <part name="parameters" element="tns:analize"/>
   </message>

@@ -36,15 +45,6 @@
   <message name="presetAnalizeResponse">
     <part name="parameters" element="tns:presetAnalizeResponse"/>
   </message>
   <message name="presetAnalizeResponse">
     <part name="parameters" element="tns:presetAnalizeResponse"/>
   </message>

-  <message name="getAnnotation">
-    <part name="parameters" element="tns:getAnnotation"/>
-  </message>
-  <message name="getAnnotationResponse">
-    <part name="parameters" element="tns:getAnnotationResponse"/>
-  </message>
-  <message name="ResultNotAvailableException">
-    <part name="fault" element="tns:ResultNotAvailableException"/>
-  </message>

   <message name="cancelJob">
     <part name="parameters" element="tns:cancelJob"/>
   </message>
   <message name="cancelJob">
     <part name="parameters" element="tns:cancelJob"/>
   </message>

@@ -88,6 +88,11 @@
     <part name="parameters" element="tns:getRunnerOptionsResponse"/>
   </message>
   <portType name="SequenceAnnotation">
     <part name="parameters" element="tns:getRunnerOptionsResponse"/>
   </message>
   <portType name="SequenceAnnotation">

+    <operation name="getAnnotation">
+      <input wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/getAnnotationRequest" message="tns:getAnnotation"/>
+      <output wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/getAnnotationResponse" message="tns:getAnnotationResponse"/>
+      <fault message="tns:ResultNotAvailableException" name="ResultNotAvailableException" wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/getAnnotation/Fault/ResultNotAvailableException"/>
+    </operation>

     <operation name="analize">
       <input wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/analizeRequest" message="tns:analize"/>
       <output wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/analizeResponse" message="tns:analizeResponse"/>
     <operation name="analize">
       <input wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/analizeRequest" message="tns:analize"/>
       <output wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/analizeResponse" message="tns:analizeResponse"/>

@@ -111,11 +116,6 @@
       <fault message="tns:JobSubmissionException" name="JobSubmissionException" wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/presetAnalize/Fault/JobSubmissionException"/>
       <fault message="tns:WrongParameterException" name="WrongParameterException" wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/presetAnalize/Fault/WrongParameterException"/>
     </operation>
       <fault message="tns:JobSubmissionException" name="JobSubmissionException" wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/presetAnalize/Fault/JobSubmissionException"/>
       <fault message="tns:WrongParameterException" name="WrongParameterException" wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/presetAnalize/Fault/WrongParameterException"/>
     </operation>

-    <operation name="getAnnotation">
-      <input wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/getAnnotationRequest" message="tns:getAnnotation"/>
-      <output wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/getAnnotationResponse" message="tns:getAnnotationResponse"/>
-      <fault message="tns:ResultNotAvailableException" name="ResultNotAvailableException" wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/getAnnotation/Fault/ResultNotAvailableException"/>
-    </operation>

     <operation name="cancelJob">
       <input wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/cancelJobRequest" message="tns:cancelJob"/>
       <output wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/cancelJobResponse" message="tns:cancelJobResponse"/>
     <operation name="cancelJob">
       <input wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/cancelJobRequest" message="tns:cancelJob"/>
       <output wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/cancelJobResponse" message="tns:cancelJobResponse"/>

@@ -147,6 +147,18 @@
   </portType>
   <binding name="AAConWSPortBinding" type="tns:SequenceAnnotation">
     <soap:binding transport="http://schemas.xmlsoap.org/soap/http" style="document"/>
   </portType>
   <binding name="AAConWSPortBinding" type="tns:SequenceAnnotation">
     <soap:binding transport="http://schemas.xmlsoap.org/soap/http" style="document"/>

+    <operation name="getAnnotation">
+      <soap:operation soapAction=""/>
+      <input>
+        <soap:body use="literal"/>
+      </input>
+      <output>
+        <soap:body use="literal"/>
+      </output>
+      <fault name="ResultNotAvailableException">
+        <soap:fault name="ResultNotAvailableException" use="literal"/>
+      </fault>
+    </operation>

     <operation name="analize">
       <soap:operation soapAction=""/>
       <input>
     <operation name="analize">
       <soap:operation soapAction=""/>
       <input>

@@ -207,18 +219,6 @@
         <soap:fault name="WrongParameterException" use="literal"/>
       </fault>
     </operation>
         <soap:fault name="WrongParameterException" use="literal"/>
       </fault>
     </operation>

-    <operation name="getAnnotation">
-      <soap:operation soapAction=""/>
-      <input>
-        <soap:body use="literal"/>
-      </input>
-      <output>
-        <soap:body use="literal"/>
-      </output>
-      <fault name="ResultNotAvailableException">
-        <soap:fault name="ResultNotAvailableException" use="literal"/>
-      </fault>
-    </operation>

     <operation name="cancelJob">
       <soap:operation soapAction=""/>
       <input>
     <operation name="cancelJob">
       <soap:operation soapAction=""/>
       <input>

diff --git a/webservices/compbio/ws/server/resource/ClustalWS.wsdl b/webservices/compbio/ws/server/resource/ClustalWS.wsdl
index 7ea9514..61508ac 100644 (file)
--- a/webservices/compbio/ws/server/resource/ClustalWS.wsdl
+++ b/webservices/compbio/ws/server/resource/ClustalWS.wsdl
@@ -15,11 +15,11 @@
   <message name="ResultNotAvailableException">
     <part name="fault" element="tns:ResultNotAvailableException"/>
   </message>
   <message name="ResultNotAvailableException">
     <part name="fault" element="tns:ResultNotAvailableException"/>
   </message>

-  <message name="presetAlign">
-    <part name="parameters" element="tns:presetAlign"/>
+  <message name="align">
+    <part name="parameters" element="tns:align"/>

   </message>
   </message>

-  <message name="presetAlignResponse">
-    <part name="parameters" element="tns:presetAlignResponse"/>
+  <message name="alignResponse">
+    <part name="parameters" element="tns:alignResponse"/>

   </message>
   <message name="UnsupportedRuntimeException">
     <part name="fault" element="tns:UnsupportedRuntimeException"/>
   </message>
   <message name="UnsupportedRuntimeException">
     <part name="fault" element="tns:UnsupportedRuntimeException"/>

@@ -30,6 +30,12 @@
   <message name="JobSubmissionException">
     <part name="fault" element="tns:JobSubmissionException"/>
   </message>
   <message name="JobSubmissionException">
     <part name="fault" element="tns:JobSubmissionException"/>
   </message>

+  <message name="presetAlign">
+    <part name="parameters" element="tns:presetAlign"/>
+  </message>
+  <message name="presetAlignResponse">
+    <part name="parameters" element="tns:presetAlignResponse"/>
+  </message>

   <message name="WrongParameterException">
     <part name="fault" element="tns:WrongParameterException"/>
   </message>
   <message name="WrongParameterException">
     <part name="fault" element="tns:WrongParameterException"/>
   </message>

@@ -39,12 +45,6 @@
   <message name="customAlignResponse">
     <part name="parameters" element="tns:customAlignResponse"/>
   </message>
   <message name="customAlignResponse">
     <part name="parameters" element="tns:customAlignResponse"/>
   </message>

-  <message name="align">
-    <part name="parameters" element="tns:align"/>
-  </message>
-  <message name="alignResponse">
-    <part name="parameters" element="tns:alignResponse"/>
-  </message>

   <message name="cancelJob">
     <part name="parameters" element="tns:cancelJob"/>
   </message>
   <message name="cancelJob">
     <part name="parameters" element="tns:cancelJob"/>
   </message>

@@ -93,6 +93,13 @@
       <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/getResultResponse" message="tns:getResultResponse"/>
       <fault message="tns:ResultNotAvailableException" name="ResultNotAvailableException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/getResult/Fault/ResultNotAvailableException"/>
     </operation>
       <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/getResultResponse" message="tns:getResultResponse"/>
       <fault message="tns:ResultNotAvailableException" name="ResultNotAvailableException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/getResult/Fault/ResultNotAvailableException"/>
     </operation>

+    <operation name="align">
+      <input wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/alignRequest" message="tns:align"/>
+      <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/alignResponse" message="tns:alignResponse"/>
+      <fault message="tns:UnsupportedRuntimeException" name="UnsupportedRuntimeException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/align/Fault/UnsupportedRuntimeException"/>
+      <fault message="tns:LimitExceededException" name="LimitExceededException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/align/Fault/LimitExceededException"/>
+      <fault message="tns:JobSubmissionException" name="JobSubmissionException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/align/Fault/JobSubmissionException"/>
+    </operation>

     <operation name="presetAlign">
       <input wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/presetAlignRequest" message="tns:presetAlign"/>
       <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/presetAlignResponse" message="tns:presetAlignResponse"/>
     <operation name="presetAlign">
       <input wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/presetAlignRequest" message="tns:presetAlign"/>
       <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/presetAlignResponse" message="tns:presetAlignResponse"/>

@@ -109,13 +116,6 @@
       <fault message="tns:JobSubmissionException" name="JobSubmissionException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/customAlign/Fault/JobSubmissionException"/>
       <fault message="tns:WrongParameterException" name="WrongParameterException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/customAlign/Fault/WrongParameterException"/>
     </operation>
       <fault message="tns:JobSubmissionException" name="JobSubmissionException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/customAlign/Fault/JobSubmissionException"/>
       <fault message="tns:WrongParameterException" name="WrongParameterException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/customAlign/Fault/WrongParameterException"/>
     </operation>

-    <operation name="align">
-      <input wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/alignRequest" message="tns:align"/>
-      <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/alignResponse" message="tns:alignResponse"/>
-      <fault message="tns:UnsupportedRuntimeException" name="UnsupportedRuntimeException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/align/Fault/UnsupportedRuntimeException"/>
-      <fault message="tns:LimitExceededException" name="LimitExceededException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/align/Fault/LimitExceededException"/>
-      <fault message="tns:JobSubmissionException" name="JobSubmissionException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/align/Fault/JobSubmissionException"/>
-    </operation>

     <operation name="cancelJob">
       <input wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/cancelJobRequest" message="tns:cancelJob"/>
       <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/cancelJobResponse" message="tns:cancelJobResponse"/>
     <operation name="cancelJob">
       <input wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/cancelJobRequest" message="tns:cancelJob"/>
       <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/cancelJobResponse" message="tns:cancelJobResponse"/>

@@ -159,7 +159,7 @@
         <soap:fault name="ResultNotAvailableException" use="literal"/>
       </fault>
     </operation>
         <soap:fault name="ResultNotAvailableException" use="literal"/>
       </fault>
     </operation>

-    <operation name="presetAlign">
+    <operation name="align">

       <soap:operation soapAction=""/>
       <input>
         <soap:body use="literal"/>
       <soap:operation soapAction=""/>
       <input>
         <soap:body use="literal"/>

@@ -176,11 +176,8 @@
       <fault name="JobSubmissionException">
         <soap:fault name="JobSubmissionException" use="literal"/>
       </fault>
       <fault name="JobSubmissionException">
         <soap:fault name="JobSubmissionException" use="literal"/>
       </fault>

-      <fault name="WrongParameterException">
-        <soap:fault name="WrongParameterException" use="literal"/>
-      </fault>

     </operation>
     </operation>

-    <operation name="customAlign">
+    <operation name="presetAlign">

       <soap:operation soapAction=""/>
       <input>
         <soap:body use="literal"/>
       <soap:operation soapAction=""/>
       <input>
         <soap:body use="literal"/>

@@ -201,7 +198,7 @@
         <soap:fault name="WrongParameterException" use="literal"/>
       </fault>
     </operation>
         <soap:fault name="WrongParameterException" use="literal"/>
       </fault>
     </operation>

-    <operation name="align">
+    <operation name="customAlign">

       <soap:operation soapAction=""/>
       <input>
         <soap:body use="literal"/>
       <soap:operation soapAction=""/>
       <input>
         <soap:body use="literal"/>

@@ -218,6 +215,9 @@
       <fault name="JobSubmissionException">
         <soap:fault name="JobSubmissionException" use="literal"/>
       </fault>
       <fault name="JobSubmissionException">
         <soap:fault name="JobSubmissionException" use="literal"/>
       </fault>

+      <fault name="WrongParameterException">
+        <soap:fault name="WrongParameterException" use="literal"/>
+      </fault>

     </operation>
     <operation name="cancelJob">
       <soap:operation soapAction=""/>
     </operation>
     <operation name="cancelJob">
       <soap:operation soapAction=""/>

diff --git a/webservices/compbio/ws/server/resource/DisemblWS.wsdl b/webservices/compbio/ws/server/resource/DisemblWS.wsdl
index ad062c4..0938649 100644 (file)
--- a/webservices/compbio/ws/server/resource/DisemblWS.wsdl
+++ b/webservices/compbio/ws/server/resource/DisemblWS.wsdl
@@ -6,6 +6,15 @@
       <xsd:import namespace="http://msa.data.compbio/01/12/2010/" schemaLocation="DisemblWS_schema1.xsd"/>
     </xsd:schema>
   </types>
       <xsd:import namespace="http://msa.data.compbio/01/12/2010/" schemaLocation="DisemblWS_schema1.xsd"/>
     </xsd:schema>
   </types>

+  <message name="getAnnotation">
+    <part name="parameters" element="tns:getAnnotation"/>
+  </message>
+  <message name="getAnnotationResponse">
+    <part name="parameters" element="tns:getAnnotationResponse"/>
+  </message>
+  <message name="ResultNotAvailableException">
+    <part name="fault" element="tns:ResultNotAvailableException"/>
+  </message>

   <message name="customAnalize">
     <part name="parameters" element="tns:customAnalize"/>
   </message>
   <message name="customAnalize">
     <part name="parameters" element="tns:customAnalize"/>
   </message>

@@ -36,15 +45,6 @@
   <message name="presetAnalizeResponse">
     <part name="parameters" element="tns:presetAnalizeResponse"/>
   </message>
   <message name="presetAnalizeResponse">
     <part name="parameters" element="tns:presetAnalizeResponse"/>
   </message>

-  <message name="getAnnotation">
-    <part name="parameters" element="tns:getAnnotation"/>
-  </message>
-  <message name="getAnnotationResponse">
-    <part name="parameters" element="tns:getAnnotationResponse"/>
-  </message>
-  <message name="ResultNotAvailableException">
-    <part name="fault" element="tns:ResultNotAvailableException"/>
-  </message>

   <message name="cancelJob">
     <part name="parameters" element="tns:cancelJob"/>
   </message>
   <message name="cancelJob">
     <part name="parameters" element="tns:cancelJob"/>
   </message>

@@ -88,6 +88,11 @@
     <part name="parameters" element="tns:getRunnerOptionsResponse"/>
   </message>
   <portType name="SequenceAnnotation">
     <part name="parameters" element="tns:getRunnerOptionsResponse"/>
   </message>
   <portType name="SequenceAnnotation">

+    <operation name="getAnnotation">
+      <input wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/getAnnotationRequest" message="tns:getAnnotation"/>
+      <output wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/getAnnotationResponse" message="tns:getAnnotationResponse"/>
+      <fault message="tns:ResultNotAvailableException" name="ResultNotAvailableException" wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/getAnnotation/Fault/ResultNotAvailableException"/>
+    </operation>

     <operation name="customAnalize">
       <input wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/customAnalizeRequest" message="tns:customAnalize"/>
       <output wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/customAnalizeResponse" message="tns:customAnalizeResponse"/>
     <operation name="customAnalize">
       <input wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/customAnalizeRequest" message="tns:customAnalize"/>
       <output wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/customAnalizeResponse" message="tns:customAnalizeResponse"/>

@@ -111,11 +116,6 @@
       <fault message="tns:JobSubmissionException" name="JobSubmissionException" wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/presetAnalize/Fault/JobSubmissionException"/>
       <fault message="tns:WrongParameterException" name="WrongParameterException" wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/presetAnalize/Fault/WrongParameterException"/>
     </operation>
       <fault message="tns:JobSubmissionException" name="JobSubmissionException" wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/presetAnalize/Fault/JobSubmissionException"/>
       <fault message="tns:WrongParameterException" name="WrongParameterException" wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/presetAnalize/Fault/WrongParameterException"/>
     </operation>

-    <operation name="getAnnotation">
-      <input wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/getAnnotationRequest" message="tns:getAnnotation"/>
-      <output wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/getAnnotationResponse" message="tns:getAnnotationResponse"/>
-      <fault message="tns:ResultNotAvailableException" name="ResultNotAvailableException" wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/getAnnotation/Fault/ResultNotAvailableException"/>
-    </operation>

     <operation name="cancelJob">
       <input wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/cancelJobRequest" message="tns:cancelJob"/>
       <output wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/cancelJobResponse" message="tns:cancelJobResponse"/>
     <operation name="cancelJob">
       <input wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/cancelJobRequest" message="tns:cancelJob"/>
       <output wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/cancelJobResponse" message="tns:cancelJobResponse"/>

@@ -147,6 +147,18 @@
   </portType>
   <binding name="DisemblWSPortBinding" type="tns:SequenceAnnotation">
     <soap:binding transport="http://schemas.xmlsoap.org/soap/http" style="document"/>
   </portType>
   <binding name="DisemblWSPortBinding" type="tns:SequenceAnnotation">
     <soap:binding transport="http://schemas.xmlsoap.org/soap/http" style="document"/>

+    <operation name="getAnnotation">
+      <soap:operation soapAction=""/>
+      <input>
+        <soap:body use="literal"/>
+      </input>
+      <output>
+        <soap:body use="literal"/>
+      </output>
+      <fault name="ResultNotAvailableException">
+        <soap:fault name="ResultNotAvailableException" use="literal"/>
+      </fault>
+    </operation>

     <operation name="customAnalize">
       <soap:operation soapAction=""/>
       <input>
     <operation name="customAnalize">
       <soap:operation soapAction=""/>
       <input>

@@ -207,18 +219,6 @@
         <soap:fault name="WrongParameterException" use="literal"/>
       </fault>
     </operation>
         <soap:fault name="WrongParameterException" use="literal"/>
       </fault>
     </operation>

-    <operation name="getAnnotation">
-      <soap:operation soapAction=""/>
-      <input>
-        <soap:body use="literal"/>
-      </input>
-      <output>
-        <soap:body use="literal"/>
-      </output>
-      <fault name="ResultNotAvailableException">
-        <soap:fault name="ResultNotAvailableException" use="literal"/>
-      </fault>
-    </operation>

     <operation name="cancelJob">
       <soap:operation soapAction=""/>
       <input>
     <operation name="cancelJob">
       <soap:operation soapAction=""/>
       <input>

diff --git a/webservices/compbio/ws/server/resource/GlobPlotWS.wsdl b/webservices/compbio/ws/server/resource/GlobPlotWS.wsdl
index 67f9169..c85f5ae 100644 (file)
--- a/webservices/compbio/ws/server/resource/GlobPlotWS.wsdl
+++ b/webservices/compbio/ws/server/resource/GlobPlotWS.wsdl
@@ -6,6 +6,15 @@
       <xsd:import namespace="http://msa.data.compbio/01/12/2010/" schemaLocation="GlobPlotWS_schema1.xsd"/>
     </xsd:schema>
   </types>
       <xsd:import namespace="http://msa.data.compbio/01/12/2010/" schemaLocation="GlobPlotWS_schema1.xsd"/>
     </xsd:schema>
   </types>

+  <message name="getAnnotation">
+    <part name="parameters" element="tns:getAnnotation"/>
+  </message>
+  <message name="getAnnotationResponse">
+    <part name="parameters" element="tns:getAnnotationResponse"/>
+  </message>
+  <message name="ResultNotAvailableException">
+    <part name="fault" element="tns:ResultNotAvailableException"/>
+  </message>

   <message name="customAnalize">
     <part name="parameters" element="tns:customAnalize"/>
   </message>
   <message name="customAnalize">
     <part name="parameters" element="tns:customAnalize"/>
   </message>

@@ -36,15 +45,6 @@
   <message name="presetAnalizeResponse">
     <part name="parameters" element="tns:presetAnalizeResponse"/>
   </message>
   <message name="presetAnalizeResponse">
     <part name="parameters" element="tns:presetAnalizeResponse"/>
   </message>

-  <message name="getAnnotation">
-    <part name="parameters" element="tns:getAnnotation"/>
-  </message>
-  <message name="getAnnotationResponse">
-    <part name="parameters" element="tns:getAnnotationResponse"/>
-  </message>
-  <message name="ResultNotAvailableException">
-    <part name="fault" element="tns:ResultNotAvailableException"/>
-  </message>

   <message name="cancelJob">
     <part name="parameters" element="tns:cancelJob"/>
   </message>
   <message name="cancelJob">
     <part name="parameters" element="tns:cancelJob"/>
   </message>

@@ -88,6 +88,11 @@
     <part name="parameters" element="tns:getRunnerOptionsResponse"/>
   </message>
   <portType name="SequenceAnnotation">
     <part name="parameters" element="tns:getRunnerOptionsResponse"/>
   </message>
   <portType name="SequenceAnnotation">

+    <operation name="getAnnotation">
+      <input wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/getAnnotationRequest" message="tns:getAnnotation"/>
+      <output wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/getAnnotationResponse" message="tns:getAnnotationResponse"/>
+      <fault message="tns:ResultNotAvailableException" name="ResultNotAvailableException" wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/getAnnotation/Fault/ResultNotAvailableException"/>
+    </operation>

     <operation name="customAnalize">
       <input wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/customAnalizeRequest" message="tns:customAnalize"/>
       <output wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/customAnalizeResponse" message="tns:customAnalizeResponse"/>
     <operation name="customAnalize">
       <input wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/customAnalizeRequest" message="tns:customAnalize"/>
       <output wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/customAnalizeResponse" message="tns:customAnalizeResponse"/>

@@ -111,11 +116,6 @@
       <fault message="tns:JobSubmissionException" name="JobSubmissionException" wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/presetAnalize/Fault/JobSubmissionException"/>
       <fault message="tns:WrongParameterException" name="WrongParameterException" wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/presetAnalize/Fault/WrongParameterException"/>
     </operation>
       <fault message="tns:JobSubmissionException" name="JobSubmissionException" wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/presetAnalize/Fault/JobSubmissionException"/>
       <fault message="tns:WrongParameterException" name="WrongParameterException" wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/presetAnalize/Fault/WrongParameterException"/>
     </operation>

-    <operation name="getAnnotation">
-      <input wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/getAnnotationRequest" message="tns:getAnnotation"/>
-      <output wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/getAnnotationResponse" message="tns:getAnnotationResponse"/>
-      <fault message="tns:ResultNotAvailableException" name="ResultNotAvailableException" wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/getAnnotation/Fault/ResultNotAvailableException"/>
-    </operation>

     <operation name="cancelJob">
       <input wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/cancelJobRequest" message="tns:cancelJob"/>
       <output wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/cancelJobResponse" message="tns:cancelJobResponse"/>
     <operation name="cancelJob">
       <input wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/cancelJobRequest" message="tns:cancelJob"/>
       <output wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/cancelJobResponse" message="tns:cancelJobResponse"/>

@@ -147,6 +147,18 @@
   </portType>
   <binding name="GlobPlotWSPortBinding" type="tns:SequenceAnnotation">
     <soap:binding transport="http://schemas.xmlsoap.org/soap/http" style="document"/>
   </portType>
   <binding name="GlobPlotWSPortBinding" type="tns:SequenceAnnotation">
     <soap:binding transport="http://schemas.xmlsoap.org/soap/http" style="document"/>

+    <operation name="getAnnotation">
+      <soap:operation soapAction=""/>
+      <input>
+        <soap:body use="literal"/>
+      </input>
+      <output>
+        <soap:body use="literal"/>
+      </output>
+      <fault name="ResultNotAvailableException">
+        <soap:fault name="ResultNotAvailableException" use="literal"/>
+      </fault>
+    </operation>

     <operation name="customAnalize">
       <soap:operation soapAction=""/>
       <input>
     <operation name="customAnalize">
       <soap:operation soapAction=""/>
       <input>

@@ -207,18 +219,6 @@
         <soap:fault name="WrongParameterException" use="literal"/>
       </fault>
     </operation>
         <soap:fault name="WrongParameterException" use="literal"/>
       </fault>
     </operation>

-    <operation name="getAnnotation">
-      <soap:operation soapAction=""/>
-      <input>
-        <soap:body use="literal"/>
-      </input>
-      <output>
-        <soap:body use="literal"/>
-      </output>
-      <fault name="ResultNotAvailableException">
-        <soap:fault name="ResultNotAvailableException" use="literal"/>
-      </fault>
-    </operation>

     <operation name="cancelJob">
       <soap:operation soapAction=""/>
       <input>
     <operation name="cancelJob">
       <soap:operation soapAction=""/>
       <input>

diff --git a/webservices/compbio/ws/server/resource/IUPredWS.wsdl b/webservices/compbio/ws/server/resource/IUPredWS.wsdl
index 4627adb..ddfde64 100644 (file)
--- a/webservices/compbio/ws/server/resource/IUPredWS.wsdl
+++ b/webservices/compbio/ws/server/resource/IUPredWS.wsdl
@@ -6,6 +6,15 @@
       <xsd:import namespace="http://msa.data.compbio/01/12/2010/" schemaLocation="IUPredWS_schema1.xsd"/>
     </xsd:schema>
   </types>
       <xsd:import namespace="http://msa.data.compbio/01/12/2010/" schemaLocation="IUPredWS_schema1.xsd"/>
     </xsd:schema>
   </types>

+  <message name="getAnnotation">
+    <part name="parameters" element="tns:getAnnotation"/>
+  </message>
+  <message name="getAnnotationResponse">
+    <part name="parameters" element="tns:getAnnotationResponse"/>
+  </message>
+  <message name="ResultNotAvailableException">
+    <part name="fault" element="tns:ResultNotAvailableException"/>
+  </message>

   <message name="customAnalize">
     <part name="parameters" element="tns:customAnalize"/>
   </message>
   <message name="customAnalize">
     <part name="parameters" element="tns:customAnalize"/>
   </message>

@@ -36,15 +45,6 @@
   <message name="presetAnalizeResponse">
     <part name="parameters" element="tns:presetAnalizeResponse"/>
   </message>
   <message name="presetAnalizeResponse">
     <part name="parameters" element="tns:presetAnalizeResponse"/>
   </message>

-  <message name="getAnnotation">
-    <part name="parameters" element="tns:getAnnotation"/>
-  </message>
-  <message name="getAnnotationResponse">
-    <part name="parameters" element="tns:getAnnotationResponse"/>
-  </message>
-  <message name="ResultNotAvailableException">
-    <part name="fault" element="tns:ResultNotAvailableException"/>
-  </message>

   <message name="cancelJob">
     <part name="parameters" element="tns:cancelJob"/>
   </message>
   <message name="cancelJob">
     <part name="parameters" element="tns:cancelJob"/>
   </message>

@@ -88,6 +88,11 @@
     <part name="parameters" element="tns:getRunnerOptionsResponse"/>
   </message>
   <portType name="SequenceAnnotation">
     <part name="parameters" element="tns:getRunnerOptionsResponse"/>
   </message>
   <portType name="SequenceAnnotation">

+    <operation name="getAnnotation">
+      <input wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/getAnnotationRequest" message="tns:getAnnotation"/>
+      <output wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/getAnnotationResponse" message="tns:getAnnotationResponse"/>
+      <fault message="tns:ResultNotAvailableException" name="ResultNotAvailableException" wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/getAnnotation/Fault/ResultNotAvailableException"/>
+    </operation>

     <operation name="customAnalize">
       <input wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/customAnalizeRequest" message="tns:customAnalize"/>
       <output wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/customAnalizeResponse" message="tns:customAnalizeResponse"/>
     <operation name="customAnalize">
       <input wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/customAnalizeRequest" message="tns:customAnalize"/>
       <output wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/customAnalizeResponse" message="tns:customAnalizeResponse"/>

@@ -111,11 +116,6 @@
       <fault message="tns:JobSubmissionException" name="JobSubmissionException" wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/presetAnalize/Fault/JobSubmissionException"/>
       <fault message="tns:WrongParameterException" name="WrongParameterException" wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/presetAnalize/Fault/WrongParameterException"/>
     </operation>
       <fault message="tns:JobSubmissionException" name="JobSubmissionException" wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/presetAnalize/Fault/JobSubmissionException"/>
       <fault message="tns:WrongParameterException" name="WrongParameterException" wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/presetAnalize/Fault/WrongParameterException"/>
     </operation>

-    <operation name="getAnnotation">
-      <input wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/getAnnotationRequest" message="tns:getAnnotation"/>
-      <output wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/getAnnotationResponse" message="tns:getAnnotationResponse"/>
-      <fault message="tns:ResultNotAvailableException" name="ResultNotAvailableException" wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/getAnnotation/Fault/ResultNotAvailableException"/>
-    </operation>

     <operation name="cancelJob">
       <input wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/cancelJobRequest" message="tns:cancelJob"/>
       <output wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/cancelJobResponse" message="tns:cancelJobResponse"/>
     <operation name="cancelJob">
       <input wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/cancelJobRequest" message="tns:cancelJob"/>
       <output wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/cancelJobResponse" message="tns:cancelJobResponse"/>

@@ -147,6 +147,18 @@
   </portType>
   <binding name="IUPredWSPortBinding" type="tns:SequenceAnnotation">
     <soap:binding transport="http://schemas.xmlsoap.org/soap/http" style="document"/>
   </portType>
   <binding name="IUPredWSPortBinding" type="tns:SequenceAnnotation">
     <soap:binding transport="http://schemas.xmlsoap.org/soap/http" style="document"/>

+    <operation name="getAnnotation">
+      <soap:operation soapAction=""/>
+      <input>
+        <soap:body use="literal"/>
+      </input>
+      <output>
+        <soap:body use="literal"/>
+      </output>
+      <fault name="ResultNotAvailableException">
+        <soap:fault name="ResultNotAvailableException" use="literal"/>
+      </fault>
+    </operation>

     <operation name="customAnalize">
       <soap:operation soapAction=""/>
       <input>
     <operation name="customAnalize">
       <soap:operation soapAction=""/>
       <input>

@@ -207,18 +219,6 @@
         <soap:fault name="WrongParameterException" use="literal"/>
       </fault>
     </operation>
         <soap:fault name="WrongParameterException" use="literal"/>
       </fault>
     </operation>

-    <operation name="getAnnotation">
-      <soap:operation soapAction=""/>
-      <input>
-        <soap:body use="literal"/>
-      </input>
-      <output>
-        <soap:body use="literal"/>
-      </output>
-      <fault name="ResultNotAvailableException">
-        <soap:fault name="ResultNotAvailableException" use="literal"/>
-      </fault>
-    </operation>

     <operation name="cancelJob">
       <soap:operation soapAction=""/>
       <input>
     <operation name="cancelJob">
       <soap:operation soapAction=""/>
       <input>

diff --git a/webservices/compbio/ws/server/resource/JronnWS.wsdl b/webservices/compbio/ws/server/resource/JronnWS.wsdl
index f8caa2c..b56cf06 100644 (file)
--- a/webservices/compbio/ws/server/resource/JronnWS.wsdl
+++ b/webservices/compbio/ws/server/resource/JronnWS.wsdl
@@ -6,6 +6,15 @@
       <xsd:import namespace="http://msa.data.compbio/01/12/2010/" schemaLocation="JronnWS_schema1.xsd"/>
     </xsd:schema>
   </types>
       <xsd:import namespace="http://msa.data.compbio/01/12/2010/" schemaLocation="JronnWS_schema1.xsd"/>
     </xsd:schema>
   </types>

+  <message name="getAnnotation">
+    <part name="parameters" element="tns:getAnnotation"/>
+  </message>
+  <message name="getAnnotationResponse">
+    <part name="parameters" element="tns:getAnnotationResponse"/>
+  </message>
+  <message name="ResultNotAvailableException">
+    <part name="fault" element="tns:ResultNotAvailableException"/>
+  </message>

   <message name="customAnalize">
     <part name="parameters" element="tns:customAnalize"/>
   </message>
   <message name="customAnalize">
     <part name="parameters" element="tns:customAnalize"/>
   </message>

@@ -36,15 +45,6 @@
   <message name="presetAnalizeResponse">
     <part name="parameters" element="tns:presetAnalizeResponse"/>
   </message>
   <message name="presetAnalizeResponse">
     <part name="parameters" element="tns:presetAnalizeResponse"/>
   </message>

-  <message name="getAnnotation">
-    <part name="parameters" element="tns:getAnnotation"/>
-  </message>
-  <message name="getAnnotationResponse">
-    <part name="parameters" element="tns:getAnnotationResponse"/>
-  </message>
-  <message name="ResultNotAvailableException">
-    <part name="fault" element="tns:ResultNotAvailableException"/>
-  </message>

   <message name="cancelJob">
     <part name="parameters" element="tns:cancelJob"/>
   </message>
   <message name="cancelJob">
     <part name="parameters" element="tns:cancelJob"/>
   </message>

@@ -88,6 +88,11 @@
     <part name="parameters" element="tns:getRunnerOptionsResponse"/>
   </message>
   <portType name="SequenceAnnotation">
     <part name="parameters" element="tns:getRunnerOptionsResponse"/>
   </message>
   <portType name="SequenceAnnotation">

+    <operation name="getAnnotation">
+      <input wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/getAnnotationRequest" message="tns:getAnnotation"/>
+      <output wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/getAnnotationResponse" message="tns:getAnnotationResponse"/>
+      <fault message="tns:ResultNotAvailableException" name="ResultNotAvailableException" wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/getAnnotation/Fault/ResultNotAvailableException"/>
+    </operation>

     <operation name="customAnalize">
       <input wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/customAnalizeRequest" message="tns:customAnalize"/>
       <output wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/customAnalizeResponse" message="tns:customAnalizeResponse"/>
     <operation name="customAnalize">
       <input wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/customAnalizeRequest" message="tns:customAnalize"/>
       <output wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/customAnalizeResponse" message="tns:customAnalizeResponse"/>

@@ -111,11 +116,6 @@
       <fault message="tns:JobSubmissionException" name="JobSubmissionException" wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/presetAnalize/Fault/JobSubmissionException"/>
       <fault message="tns:WrongParameterException" name="WrongParameterException" wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/presetAnalize/Fault/WrongParameterException"/>
     </operation>
       <fault message="tns:JobSubmissionException" name="JobSubmissionException" wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/presetAnalize/Fault/JobSubmissionException"/>
       <fault message="tns:WrongParameterException" name="WrongParameterException" wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/presetAnalize/Fault/WrongParameterException"/>
     </operation>

-    <operation name="getAnnotation">
-      <input wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/getAnnotationRequest" message="tns:getAnnotation"/>
-      <output wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/getAnnotationResponse" message="tns:getAnnotationResponse"/>
-      <fault message="tns:ResultNotAvailableException" name="ResultNotAvailableException" wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/getAnnotation/Fault/ResultNotAvailableException"/>
-    </operation>

     <operation name="cancelJob">
       <input wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/cancelJobRequest" message="tns:cancelJob"/>
       <output wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/cancelJobResponse" message="tns:cancelJobResponse"/>
     <operation name="cancelJob">
       <input wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/cancelJobRequest" message="tns:cancelJob"/>
       <output wsam:Action="http://msa.data.compbio/01/12/2010/SequenceAnnotation/cancelJobResponse" message="tns:cancelJobResponse"/>

@@ -147,6 +147,18 @@
   </portType>
   <binding name="JronnWSPortBinding" type="tns:SequenceAnnotation">
     <soap:binding transport="http://schemas.xmlsoap.org/soap/http" style="document"/>
   </portType>
   <binding name="JronnWSPortBinding" type="tns:SequenceAnnotation">
     <soap:binding transport="http://schemas.xmlsoap.org/soap/http" style="document"/>

+    <operation name="getAnnotation">
+      <soap:operation soapAction=""/>
+      <input>
+        <soap:body use="literal"/>
+      </input>
+      <output>
+        <soap:body use="literal"/>
+      </output>
+      <fault name="ResultNotAvailableException">
+        <soap:fault name="ResultNotAvailableException" use="literal"/>
+      </fault>
+    </operation>

     <operation name="customAnalize">
       <soap:operation soapAction=""/>
       <input>
     <operation name="customAnalize">
       <soap:operation soapAction=""/>
       <input>

@@ -207,18 +219,6 @@
         <soap:fault name="WrongParameterException" use="literal"/>
       </fault>
     </operation>
         <soap:fault name="WrongParameterException" use="literal"/>
       </fault>
     </operation>

-    <operation name="getAnnotation">
-      <soap:operation soapAction=""/>
-      <input>
-        <soap:body use="literal"/>
-      </input>
-      <output>
-        <soap:body use="literal"/>
-      </output>
-      <fault name="ResultNotAvailableException">
-        <soap:fault name="ResultNotAvailableException" use="literal"/>
-      </fault>
-    </operation>

     <operation name="cancelJob">
       <soap:operation soapAction=""/>
       <input>
     <operation name="cancelJob">
       <soap:operation soapAction=""/>
       <input>

diff --git a/webservices/compbio/ws/server/resource/MafftWS.wsdl b/webservices/compbio/ws/server/resource/MafftWS.wsdl
index c4fcf1c..bebc64b 100644 (file)
--- a/webservices/compbio/ws/server/resource/MafftWS.wsdl
+++ b/webservices/compbio/ws/server/resource/MafftWS.wsdl
@@ -15,11 +15,11 @@
   <message name="ResultNotAvailableException">
     <part name="fault" element="tns:ResultNotAvailableException"/>
   </message>
   <message name="ResultNotAvailableException">
     <part name="fault" element="tns:ResultNotAvailableException"/>
   </message>

-  <message name="presetAlign">
-    <part name="parameters" element="tns:presetAlign"/>
+  <message name="align">
+    <part name="parameters" element="tns:align"/>

   </message>
   </message>

-  <message name="presetAlignResponse">
-    <part name="parameters" element="tns:presetAlignResponse"/>
+  <message name="alignResponse">
+    <part name="parameters" element="tns:alignResponse"/>

   </message>
   <message name="UnsupportedRuntimeException">
     <part name="fault" element="tns:UnsupportedRuntimeException"/>
   </message>
   <message name="UnsupportedRuntimeException">
     <part name="fault" element="tns:UnsupportedRuntimeException"/>

@@ -30,6 +30,12 @@
   <message name="JobSubmissionException">
     <part name="fault" element="tns:JobSubmissionException"/>
   </message>
   <message name="JobSubmissionException">
     <part name="fault" element="tns:JobSubmissionException"/>
   </message>

+  <message name="presetAlign">
+    <part name="parameters" element="tns:presetAlign"/>
+  </message>
+  <message name="presetAlignResponse">
+    <part name="parameters" element="tns:presetAlignResponse"/>
+  </message>

   <message name="WrongParameterException">
     <part name="fault" element="tns:WrongParameterException"/>
   </message>
   <message name="WrongParameterException">
     <part name="fault" element="tns:WrongParameterException"/>
   </message>

@@ -39,12 +45,6 @@
   <message name="customAlignResponse">
     <part name="parameters" element="tns:customAlignResponse"/>
   </message>
   <message name="customAlignResponse">
     <part name="parameters" element="tns:customAlignResponse"/>
   </message>

-  <message name="align">
-    <part name="parameters" element="tns:align"/>
-  </message>
-  <message name="alignResponse">
-    <part name="parameters" element="tns:alignResponse"/>
-  </message>

   <message name="cancelJob">
     <part name="parameters" element="tns:cancelJob"/>
   </message>
   <message name="cancelJob">
     <part name="parameters" element="tns:cancelJob"/>
   </message>

@@ -93,6 +93,13 @@
       <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/getResultResponse" message="tns:getResultResponse"/>
       <fault message="tns:ResultNotAvailableException" name="ResultNotAvailableException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/getResult/Fault/ResultNotAvailableException"/>
     </operation>
       <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/getResultResponse" message="tns:getResultResponse"/>
       <fault message="tns:ResultNotAvailableException" name="ResultNotAvailableException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/getResult/Fault/ResultNotAvailableException"/>
     </operation>

+    <operation name="align">
+      <input wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/alignRequest" message="tns:align"/>
+      <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/alignResponse" message="tns:alignResponse"/>
+      <fault message="tns:UnsupportedRuntimeException" name="UnsupportedRuntimeException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/align/Fault/UnsupportedRuntimeException"/>
+      <fault message="tns:LimitExceededException" name="LimitExceededException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/align/Fault/LimitExceededException"/>
+      <fault message="tns:JobSubmissionException" name="JobSubmissionException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/align/Fault/JobSubmissionException"/>
+    </operation>

     <operation name="presetAlign">
       <input wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/presetAlignRequest" message="tns:presetAlign"/>
       <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/presetAlignResponse" message="tns:presetAlignResponse"/>
     <operation name="presetAlign">
       <input wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/presetAlignRequest" message="tns:presetAlign"/>
       <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/presetAlignResponse" message="tns:presetAlignResponse"/>

@@ -109,13 +116,6 @@
       <fault message="tns:JobSubmissionException" name="JobSubmissionException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/customAlign/Fault/JobSubmissionException"/>
       <fault message="tns:WrongParameterException" name="WrongParameterException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/customAlign/Fault/WrongParameterException"/>
     </operation>
       <fault message="tns:JobSubmissionException" name="JobSubmissionException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/customAlign/Fault/JobSubmissionException"/>
       <fault message="tns:WrongParameterException" name="WrongParameterException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/customAlign/Fault/WrongParameterException"/>
     </operation>

-    <operation name="align">
-      <input wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/alignRequest" message="tns:align"/>
-      <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/alignResponse" message="tns:alignResponse"/>
-      <fault message="tns:UnsupportedRuntimeException" name="UnsupportedRuntimeException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/align/Fault/UnsupportedRuntimeException"/>
-      <fault message="tns:LimitExceededException" name="LimitExceededException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/align/Fault/LimitExceededException"/>
-      <fault message="tns:JobSubmissionException" name="JobSubmissionException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/align/Fault/JobSubmissionException"/>
-    </operation>

     <operation name="cancelJob">
       <input wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/cancelJobRequest" message="tns:cancelJob"/>
       <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/cancelJobResponse" message="tns:cancelJobResponse"/>
     <operation name="cancelJob">
       <input wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/cancelJobRequest" message="tns:cancelJob"/>
       <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/cancelJobResponse" message="tns:cancelJobResponse"/>

@@ -159,7 +159,7 @@
         <soap:fault name="ResultNotAvailableException" use="literal"/>
       </fault>
     </operation>
         <soap:fault name="ResultNotAvailableException" use="literal"/>
       </fault>
     </operation>

-    <operation name="presetAlign">
+    <operation name="align">

       <soap:operation soapAction=""/>
       <input>
         <soap:body use="literal"/>
       <soap:operation soapAction=""/>
       <input>
         <soap:body use="literal"/>

@@ -176,11 +176,8 @@
       <fault name="JobSubmissionException">
         <soap:fault name="JobSubmissionException" use="literal"/>
       </fault>
       <fault name="JobSubmissionException">
         <soap:fault name="JobSubmissionException" use="literal"/>
       </fault>

-      <fault name="WrongParameterException">
-        <soap:fault name="WrongParameterException" use="literal"/>
-      </fault>

     </operation>
     </operation>

-    <operation name="customAlign">
+    <operation name="presetAlign">

       <soap:operation soapAction=""/>
       <input>
         <soap:body use="literal"/>
       <soap:operation soapAction=""/>
       <input>
         <soap:body use="literal"/>

@@ -201,7 +198,7 @@
         <soap:fault name="WrongParameterException" use="literal"/>
       </fault>
     </operation>
         <soap:fault name="WrongParameterException" use="literal"/>
       </fault>
     </operation>

-    <operation name="align">
+    <operation name="customAlign">

       <soap:operation soapAction=""/>
       <input>
         <soap:body use="literal"/>
       <soap:operation soapAction=""/>
       <input>
         <soap:body use="literal"/>

@@ -218,6 +215,9 @@
       <fault name="JobSubmissionException">
         <soap:fault name="JobSubmissionException" use="literal"/>
       </fault>
       <fault name="JobSubmissionException">
         <soap:fault name="JobSubmissionException" use="literal"/>
       </fault>

+      <fault name="WrongParameterException">
+        <soap:fault name="WrongParameterException" use="literal"/>
+      </fault>

     </operation>
     <operation name="cancelJob">
       <soap:operation soapAction=""/>
     </operation>
     <operation name="cancelJob">
       <soap:operation soapAction=""/>

diff --git a/webservices/compbio/ws/server/resource/MuscleWS.wsdl b/webservices/compbio/ws/server/resource/MuscleWS.wsdl
index da4ed97..4f2af4f 100644 (file)
--- a/webservices/compbio/ws/server/resource/MuscleWS.wsdl
+++ b/webservices/compbio/ws/server/resource/MuscleWS.wsdl
@@ -15,11 +15,11 @@
   <message name="ResultNotAvailableException">
     <part name="fault" element="tns:ResultNotAvailableException"/>
   </message>
   <message name="ResultNotAvailableException">
     <part name="fault" element="tns:ResultNotAvailableException"/>
   </message>

-  <message name="presetAlign">
-    <part name="parameters" element="tns:presetAlign"/>
+  <message name="align">
+    <part name="parameters" element="tns:align"/>

   </message>
   </message>

-  <message name="presetAlignResponse">
-    <part name="parameters" element="tns:presetAlignResponse"/>
+  <message name="alignResponse">
+    <part name="parameters" element="tns:alignResponse"/>

   </message>
   <message name="UnsupportedRuntimeException">
     <part name="fault" element="tns:UnsupportedRuntimeException"/>
   </message>
   <message name="UnsupportedRuntimeException">
     <part name="fault" element="tns:UnsupportedRuntimeException"/>

@@ -30,6 +30,12 @@
   <message name="JobSubmissionException">
     <part name="fault" element="tns:JobSubmissionException"/>
   </message>
   <message name="JobSubmissionException">
     <part name="fault" element="tns:JobSubmissionException"/>
   </message>

+  <message name="presetAlign">
+    <part name="parameters" element="tns:presetAlign"/>
+  </message>
+  <message name="presetAlignResponse">
+    <part name="parameters" element="tns:presetAlignResponse"/>
+  </message>

   <message name="WrongParameterException">
     <part name="fault" element="tns:WrongParameterException"/>
   </message>
   <message name="WrongParameterException">
     <part name="fault" element="tns:WrongParameterException"/>
   </message>

@@ -39,12 +45,6 @@
   <message name="customAlignResponse">
     <part name="parameters" element="tns:customAlignResponse"/>
   </message>
   <message name="customAlignResponse">
     <part name="parameters" element="tns:customAlignResponse"/>
   </message>

-  <message name="align">
-    <part name="parameters" element="tns:align"/>
-  </message>
-  <message name="alignResponse">
-    <part name="parameters" element="tns:alignResponse"/>
-  </message>

   <message name="cancelJob">
     <part name="parameters" element="tns:cancelJob"/>
   </message>
   <message name="cancelJob">
     <part name="parameters" element="tns:cancelJob"/>
   </message>

@@ -93,6 +93,13 @@
       <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/getResultResponse" message="tns:getResultResponse"/>
       <fault message="tns:ResultNotAvailableException" name="ResultNotAvailableException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/getResult/Fault/ResultNotAvailableException"/>
     </operation>
       <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/getResultResponse" message="tns:getResultResponse"/>
       <fault message="tns:ResultNotAvailableException" name="ResultNotAvailableException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/getResult/Fault/ResultNotAvailableException"/>
     </operation>

+    <operation name="align">
+      <input wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/alignRequest" message="tns:align"/>
+      <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/alignResponse" message="tns:alignResponse"/>
+      <fault message="tns:UnsupportedRuntimeException" name="UnsupportedRuntimeException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/align/Fault/UnsupportedRuntimeException"/>
+      <fault message="tns:LimitExceededException" name="LimitExceededException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/align/Fault/LimitExceededException"/>
+      <fault message="tns:JobSubmissionException" name="JobSubmissionException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/align/Fault/JobSubmissionException"/>
+    </operation>

     <operation name="presetAlign">
       <input wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/presetAlignRequest" message="tns:presetAlign"/>
       <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/presetAlignResponse" message="tns:presetAlignResponse"/>
     <operation name="presetAlign">
       <input wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/presetAlignRequest" message="tns:presetAlign"/>
       <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/presetAlignResponse" message="tns:presetAlignResponse"/>

@@ -109,13 +116,6 @@
       <fault message="tns:JobSubmissionException" name="JobSubmissionException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/customAlign/Fault/JobSubmissionException"/>
       <fault message="tns:WrongParameterException" name="WrongParameterException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/customAlign/Fault/WrongParameterException"/>
     </operation>
       <fault message="tns:JobSubmissionException" name="JobSubmissionException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/customAlign/Fault/JobSubmissionException"/>
       <fault message="tns:WrongParameterException" name="WrongParameterException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/customAlign/Fault/WrongParameterException"/>
     </operation>

-    <operation name="align">
-      <input wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/alignRequest" message="tns:align"/>
-      <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/alignResponse" message="tns:alignResponse"/>
-      <fault message="tns:UnsupportedRuntimeException" name="UnsupportedRuntimeException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/align/Fault/UnsupportedRuntimeException"/>
-      <fault message="tns:LimitExceededException" name="LimitExceededException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/align/Fault/LimitExceededException"/>
-      <fault message="tns:JobSubmissionException" name="JobSubmissionException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/align/Fault/JobSubmissionException"/>
-    </operation>

     <operation name="cancelJob">
       <input wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/cancelJobRequest" message="tns:cancelJob"/>
       <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/cancelJobResponse" message="tns:cancelJobResponse"/>
     <operation name="cancelJob">
       <input wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/cancelJobRequest" message="tns:cancelJob"/>
       <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/cancelJobResponse" message="tns:cancelJobResponse"/>

@@ -159,7 +159,7 @@
         <soap:fault name="ResultNotAvailableException" use="literal"/>
       </fault>
     </operation>
         <soap:fault name="ResultNotAvailableException" use="literal"/>
       </fault>
     </operation>

-    <operation name="presetAlign">
+    <operation name="align">

       <soap:operation soapAction=""/>
       <input>
         <soap:body use="literal"/>
       <soap:operation soapAction=""/>
       <input>
         <soap:body use="literal"/>

@@ -176,11 +176,8 @@
       <fault name="JobSubmissionException">
         <soap:fault name="JobSubmissionException" use="literal"/>
       </fault>
       <fault name="JobSubmissionException">
         <soap:fault name="JobSubmissionException" use="literal"/>
       </fault>

-      <fault name="WrongParameterException">
-        <soap:fault name="WrongParameterException" use="literal"/>
-      </fault>

     </operation>
     </operation>

-    <operation name="customAlign">
+    <operation name="presetAlign">

       <soap:operation soapAction=""/>
       <input>
         <soap:body use="literal"/>
       <soap:operation soapAction=""/>
       <input>
         <soap:body use="literal"/>

@@ -201,7 +198,7 @@
         <soap:fault name="WrongParameterException" use="literal"/>
       </fault>
     </operation>
         <soap:fault name="WrongParameterException" use="literal"/>
       </fault>
     </operation>

-    <operation name="align">
+    <operation name="customAlign">

       <soap:operation soapAction=""/>
       <input>
         <soap:body use="literal"/>
       <soap:operation soapAction=""/>
       <input>
         <soap:body use="literal"/>

@@ -218,6 +215,9 @@
       <fault name="JobSubmissionException">
         <soap:fault name="JobSubmissionException" use="literal"/>
       </fault>
       <fault name="JobSubmissionException">
         <soap:fault name="JobSubmissionException" use="literal"/>
       </fault>

+      <fault name="WrongParameterException">
+        <soap:fault name="WrongParameterException" use="literal"/>
+      </fault>

     </operation>
     <operation name="cancelJob">
       <soap:operation soapAction=""/>
     </operation>
     <operation name="cancelJob">
       <soap:operation soapAction=""/>

diff --git a/webservices/compbio/ws/server/resource/RegistryWS.wsdl b/webservices/compbio/ws/server/resource/RegistryWS.wsdl
index 6760f66..6e2d9f9 100644 (file)
--- a/webservices/compbio/ws/server/resource/RegistryWS.wsdl
+++ b/webservices/compbio/ws/server/resource/RegistryWS.wsdl
@@ -42,6 +42,18 @@
   <message name="isOperatingResponse">
     <part name="parameters" element="tns:isOperatingResponse"/>
   </message>
   <message name="isOperatingResponse">
     <part name="parameters" element="tns:isOperatingResponse"/>
   </message>

+  <message name="getServiceDescription">
+    <part name="parameters" element="tns:getServiceDescription"/>
+  </message>
+  <message name="getServiceDescriptionResponse">
+    <part name="parameters" element="tns:getServiceDescriptionResponse"/>
+  </message>
+  <message name="getServiceCategories">
+    <part name="parameters" element="tns:getServiceCategories"/>
+  </message>
+  <message name="getServiceCategoriesResponse">
+    <part name="parameters" element="tns:getServiceCategoriesResponse"/>
+  </message>

   <portType name="RegistryWS">
     <operation name="getSupportedServices">
       <input wsam:Action="http://msa.data.compbio/01/12/2010/RegistryWS/getSupportedServicesRequest" message="tns:getSupportedServices"/>
   <portType name="RegistryWS">
     <operation name="getSupportedServices">
       <input wsam:Action="http://msa.data.compbio/01/12/2010/RegistryWS/getSupportedServicesRequest" message="tns:getSupportedServices"/>

@@ -67,6 +79,14 @@
       <input wsam:Action="http://msa.data.compbio/01/12/2010/RegistryWS/isOperatingRequest" message="tns:isOperating"/>
       <output wsam:Action="http://msa.data.compbio/01/12/2010/RegistryWS/isOperatingResponse" message="tns:isOperatingResponse"/>
     </operation>
       <input wsam:Action="http://msa.data.compbio/01/12/2010/RegistryWS/isOperatingRequest" message="tns:isOperating"/>
       <output wsam:Action="http://msa.data.compbio/01/12/2010/RegistryWS/isOperatingResponse" message="tns:isOperatingResponse"/>
     </operation>

+    <operation name="getServiceDescription">
+      <input wsam:Action="http://msa.data.compbio/01/12/2010/RegistryWS/getServiceDescriptionRequest" message="tns:getServiceDescription"/>
+      <output wsam:Action="http://msa.data.compbio/01/12/2010/RegistryWS/getServiceDescriptionResponse" message="tns:getServiceDescriptionResponse"/>
+    </operation>
+    <operation name="getServiceCategories">
+      <input wsam:Action="http://msa.data.compbio/01/12/2010/RegistryWS/getServiceCategoriesRequest" message="tns:getServiceCategories"/>
+      <output wsam:Action="http://msa.data.compbio/01/12/2010/RegistryWS/getServiceCategoriesResponse" message="tns:getServiceCategoriesResponse"/>
+    </operation>

   </portType>
   <binding name="RegistryWSPortBinding" type="tns:RegistryWS">
     <soap:binding transport="http://schemas.xmlsoap.org/soap/http" style="document"/>
   </portType>
   <binding name="RegistryWSPortBinding" type="tns:RegistryWS">
     <soap:binding transport="http://schemas.xmlsoap.org/soap/http" style="document"/>

@@ -124,6 +144,24 @@
         <soap:body use="literal"/>
       </output>
     </operation>
         <soap:body use="literal"/>
       </output>
     </operation>

+    <operation name="getServiceDescription">
+      <soap:operation soapAction=""/>
+      <input>
+        <soap:body use="literal"/>
+      </input>
+      <output>
+        <soap:body use="literal"/>
+      </output>
+    </operation>
+    <operation name="getServiceCategories">
+      <soap:operation soapAction=""/>
+      <input>
+        <soap:body use="literal"/>
+      </input>
+      <output>
+        <soap:body use="literal"/>
+      </output>
+    </operation>

   </binding>
   <service name="RegistryWS">
     <port name="RegistryWSPort" binding="tns:RegistryWSPortBinding">
   </binding>
   <service name="RegistryWS">
     <port name="RegistryWSPort" binding="tns:RegistryWSPortBinding">

diff --git a/webservices/compbio/ws/server/resource/RegistryWS_schema1.xsd b/webservices/compbio/ws/server/resource/RegistryWS_schema1.xsd
index a7cb4c7..745515a 100644 (file)
--- a/webservices/compbio/ws/server/resource/RegistryWS_schema1.xsd
+++ b/webservices/compbio/ws/server/resource/RegistryWS_schema1.xsd
@@ -9,6 +9,14 @@
 
   <xs:element name="getLastTestedResponse" type="tns:getLastTestedResponse"/>
 
 
   <xs:element name="getLastTestedResponse" type="tns:getLastTestedResponse"/>
 

+  <xs:element name="getServiceCategories" type="tns:getServiceCategories"/>
+
+  <xs:element name="getServiceCategoriesResponse" type="tns:getServiceCategoriesResponse"/>
+
+  <xs:element name="getServiceDescription" type="tns:getServiceDescription"/>
+
+  <xs:element name="getServiceDescriptionResponse" type="tns:getServiceDescriptionResponse"/>
+

   <xs:element name="getSupportedServices" type="tns:getSupportedServices"/>
 
   <xs:element name="getSupportedServicesResponse" type="tns:getSupportedServicesResponse"/>
   <xs:element name="getSupportedServices" type="tns:getSupportedServices"/>
 
   <xs:element name="getSupportedServicesResponse" type="tns:getSupportedServicesResponse"/>

@@ -47,6 +55,18 @@
     </xs:sequence>
   </xs:complexType>
 
     </xs:sequence>
   </xs:complexType>
 

+  <xs:complexType name="getServiceDescription">
+    <xs:sequence>
+      <xs:element name="arg0" type="tns:services" minOccurs="0"/>
+    </xs:sequence>
+  </xs:complexType>
+
+  <xs:complexType name="getServiceDescriptionResponse">
+    <xs:sequence>
+      <xs:element name="return" type="xs:string" minOccurs="0"/>
+    </xs:sequence>
+  </xs:complexType>
+

   <xs:complexType name="getSupportedServices">
     <xs:sequence/>
   </xs:complexType>
   <xs:complexType name="getSupportedServices">
     <xs:sequence/>
   </xs:complexType>

@@ -57,6 +77,23 @@
     </xs:sequence>
   </xs:complexType>
 
     </xs:sequence>
   </xs:complexType>
 

+  <xs:complexType name="getServiceCategories">
+    <xs:sequence/>
+  </xs:complexType>
+
+  <xs:complexType name="getServiceCategoriesResponse">
+    <xs:sequence>
+      <xs:element name="return" type="tns:category" minOccurs="0" maxOccurs="unbounded"/>
+    </xs:sequence>
+  </xs:complexType>
+
+  <xs:complexType name="category">
+    <xs:sequence>
+      <xs:element name="name" type="xs:string" minOccurs="0"/>
+      <xs:element name="services" type="tns:services" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
+    </xs:sequence>
+  </xs:complexType>
+

   <xs:complexType name="isOperating">
     <xs:sequence>
       <xs:element name="arg0" type="tns:services" minOccurs="0"/>
   <xs:complexType name="isOperating">
     <xs:sequence>
       <xs:element name="arg0" type="tns:services" minOccurs="0"/>

@@ -98,6 +135,7 @@
       <xs:enumeration value="MafftWS"/>
       <xs:enumeration value="MuscleWS"/>
       <xs:enumeration value="ClustalWS"/>
       <xs:enumeration value="MafftWS"/>
       <xs:enumeration value="MuscleWS"/>
       <xs:enumeration value="ClustalWS"/>

+      <xs:enumeration value="ClustalOWS"/>

       <xs:enumeration value="TcoffeeWS"/>
       <xs:enumeration value="ProbconsWS"/>
       <xs:enumeration value="AAConWS"/>
       <xs:enumeration value="TcoffeeWS"/>
       <xs:enumeration value="ProbconsWS"/>
       <xs:enumeration value="AAConWS"/>

diff --git a/webservices/compbio/ws/server/resource/TcoffeeWS.wsdl b/webservices/compbio/ws/server/resource/TcoffeeWS.wsdl
index 6781837..5129abb 100644 (file)
--- a/webservices/compbio/ws/server/resource/TcoffeeWS.wsdl
+++ b/webservices/compbio/ws/server/resource/TcoffeeWS.wsdl
@@ -15,11 +15,11 @@
   <message name="ResultNotAvailableException">
     <part name="fault" element="tns:ResultNotAvailableException"/>
   </message>
   <message name="ResultNotAvailableException">
     <part name="fault" element="tns:ResultNotAvailableException"/>
   </message>

-  <message name="presetAlign">
-    <part name="parameters" element="tns:presetAlign"/>
+  <message name="align">
+    <part name="parameters" element="tns:align"/>

   </message>
   </message>

-  <message name="presetAlignResponse">
-    <part name="parameters" element="tns:presetAlignResponse"/>
+  <message name="alignResponse">
+    <part name="parameters" element="tns:alignResponse"/>

   </message>
   <message name="UnsupportedRuntimeException">
     <part name="fault" element="tns:UnsupportedRuntimeException"/>
   </message>
   <message name="UnsupportedRuntimeException">
     <part name="fault" element="tns:UnsupportedRuntimeException"/>

@@ -30,6 +30,12 @@
   <message name="JobSubmissionException">
     <part name="fault" element="tns:JobSubmissionException"/>
   </message>
   <message name="JobSubmissionException">
     <part name="fault" element="tns:JobSubmissionException"/>
   </message>

+  <message name="presetAlign">
+    <part name="parameters" element="tns:presetAlign"/>
+  </message>
+  <message name="presetAlignResponse">
+    <part name="parameters" element="tns:presetAlignResponse"/>
+  </message>

   <message name="WrongParameterException">
     <part name="fault" element="tns:WrongParameterException"/>
   </message>
   <message name="WrongParameterException">
     <part name="fault" element="tns:WrongParameterException"/>
   </message>

@@ -39,12 +45,6 @@
   <message name="customAlignResponse">
     <part name="parameters" element="tns:customAlignResponse"/>
   </message>
   <message name="customAlignResponse">
     <part name="parameters" element="tns:customAlignResponse"/>
   </message>

-  <message name="align">
-    <part name="parameters" element="tns:align"/>
-  </message>
-  <message name="alignResponse">
-    <part name="parameters" element="tns:alignResponse"/>
-  </message>

   <message name="cancelJob">
     <part name="parameters" element="tns:cancelJob"/>
   </message>
   <message name="cancelJob">
     <part name="parameters" element="tns:cancelJob"/>
   </message>

@@ -93,6 +93,13 @@
       <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/getResultResponse" message="tns:getResultResponse"/>
       <fault message="tns:ResultNotAvailableException" name="ResultNotAvailableException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/getResult/Fault/ResultNotAvailableException"/>
     </operation>
       <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/getResultResponse" message="tns:getResultResponse"/>
       <fault message="tns:ResultNotAvailableException" name="ResultNotAvailableException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/getResult/Fault/ResultNotAvailableException"/>
     </operation>

+    <operation name="align">
+      <input wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/alignRequest" message="tns:align"/>
+      <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/alignResponse" message="tns:alignResponse"/>
+      <fault message="tns:UnsupportedRuntimeException" name="UnsupportedRuntimeException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/align/Fault/UnsupportedRuntimeException"/>
+      <fault message="tns:LimitExceededException" name="LimitExceededException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/align/Fault/LimitExceededException"/>
+      <fault message="tns:JobSubmissionException" name="JobSubmissionException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/align/Fault/JobSubmissionException"/>
+    </operation>

     <operation name="presetAlign">
       <input wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/presetAlignRequest" message="tns:presetAlign"/>
       <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/presetAlignResponse" message="tns:presetAlignResponse"/>
     <operation name="presetAlign">
       <input wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/presetAlignRequest" message="tns:presetAlign"/>
       <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/presetAlignResponse" message="tns:presetAlignResponse"/>

@@ -109,13 +116,6 @@
       <fault message="tns:JobSubmissionException" name="JobSubmissionException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/customAlign/Fault/JobSubmissionException"/>
       <fault message="tns:WrongParameterException" name="WrongParameterException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/customAlign/Fault/WrongParameterException"/>
     </operation>
       <fault message="tns:JobSubmissionException" name="JobSubmissionException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/customAlign/Fault/JobSubmissionException"/>
       <fault message="tns:WrongParameterException" name="WrongParameterException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/customAlign/Fault/WrongParameterException"/>
     </operation>

-    <operation name="align">
-      <input wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/alignRequest" message="tns:align"/>
-      <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/alignResponse" message="tns:alignResponse"/>
-      <fault message="tns:UnsupportedRuntimeException" name="UnsupportedRuntimeException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/align/Fault/UnsupportedRuntimeException"/>
-      <fault message="tns:LimitExceededException" name="LimitExceededException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/align/Fault/LimitExceededException"/>
-      <fault message="tns:JobSubmissionException" name="JobSubmissionException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/align/Fault/JobSubmissionException"/>
-    </operation>

     <operation name="cancelJob">
       <input wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/cancelJobRequest" message="tns:cancelJob"/>
       <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/cancelJobResponse" message="tns:cancelJobResponse"/>
     <operation name="cancelJob">
       <input wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/cancelJobRequest" message="tns:cancelJob"/>
       <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/cancelJobResponse" message="tns:cancelJobResponse"/>

@@ -159,7 +159,7 @@
         <soap:fault name="ResultNotAvailableException" use="literal"/>
       </fault>
     </operation>
         <soap:fault name="ResultNotAvailableException" use="literal"/>
       </fault>
     </operation>

-    <operation name="presetAlign">
+    <operation name="align">

       <soap:operation soapAction=""/>
       <input>
         <soap:body use="literal"/>
       <soap:operation soapAction=""/>
       <input>
         <soap:body use="literal"/>

@@ -176,11 +176,8 @@
       <fault name="JobSubmissionException">
         <soap:fault name="JobSubmissionException" use="literal"/>
       </fault>
       <fault name="JobSubmissionException">
         <soap:fault name="JobSubmissionException" use="literal"/>
       </fault>

-      <fault name="WrongParameterException">
-        <soap:fault name="WrongParameterException" use="literal"/>
-      </fault>

     </operation>
     </operation>

-    <operation name="customAlign">
+    <operation name="presetAlign">

       <soap:operation soapAction=""/>
       <input>
         <soap:body use="literal"/>
       <soap:operation soapAction=""/>
       <input>
         <soap:body use="literal"/>

@@ -201,7 +198,7 @@
         <soap:fault name="WrongParameterException" use="literal"/>
       </fault>
     </operation>
         <soap:fault name="WrongParameterException" use="literal"/>
       </fault>
     </operation>

-    <operation name="align">
+    <operation name="customAlign">

       <soap:operation soapAction=""/>
       <input>
         <soap:body use="literal"/>
       <soap:operation soapAction=""/>
       <input>
         <soap:body use="literal"/>

@@ -218,6 +215,9 @@
       <fault name="JobSubmissionException">
         <soap:fault name="JobSubmissionException" use="literal"/>
       </fault>
       <fault name="JobSubmissionException">
         <soap:fault name="JobSubmissionException" use="literal"/>
       </fault>

+      <fault name="WrongParameterException">
+        <soap:fault name="WrongParameterException" use="literal"/>
+      </fault>

     </operation>
     <operation name="cancelJob">
       <soap:operation soapAction=""/>
     </operation>
     <operation name="cancelJob">
       <soap:operation soapAction=""/>