Web site updates

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4643 e3abac25-378b-4346-85de-24260fe3988d

diff --git a/website/contacts.html b/website/contacts.html
index faee9ad..dd89d87 100644 (file)
--- a/website/contacts.html
+++ b/website/contacts.html
@@ -30,7 +30,7 @@ page</title>
 <a href="man_about.html">Manual</a> \r
 <a href="download.html">Download</a> \r
 <a href="PublicAnnualStat" title="JABAWS usage statistics">Usage Statistics</a>\r
-<a href="ServiceStatus" title="JABAWS webservices status">Services Status</a>\r
+ <a href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
 <a class="selected" href="contacts.html">Contact Us</a>\r
 <a href="http://www.compbio.dundee.ac.uk" title="University of Dundee, The Barton Group" >Barton Group</a>\r
 </div>\r

diff --git a/website/download.html b/website/download.html
index bb430c3..68df896 100644 (file)
--- a/website/download.html
+++ b/website/download.html
@@ -31,7 +31,7 @@ page</title>
 <a href="man_about.html">Manual</a> \r
 <a class="selected" href="download.html">Download</a> \r
 <a href="PublicAnnualStat" title="JABAWS usage statistics">Usage Statistics</a>\r
-<a href="ServiceStatus" title="JABAWS webservices status">Services Status</a>\r
+ <a href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
 <a href="contacts.html">Contact Us</a>\r
 <a href="http://www.compbio.dundee.ac.uk" title="University of Dundee, The Barton Group" >Barton Group</a>\r
 </div>\r

diff --git a/website/index.html b/website/index.html
index 20fc40f..e93cb3c 100644 (file)
--- a/website/index.html
+++ b/website/index.html
@@ -33,7 +33,7 @@ page</title>
  <a href="man_about.html">Manual</a> \r
  <a href="download.html">Download</a> \r
  <a href="PublicAnnualStat" title="JABAWS server usage statistics">Usage Statistics</a>\r
- <a href="ServiceStatus" title="JABAWS webservices status">Services Status</a>\r
+ <a href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
  <a href="contacts.html">Contact Us</a>\r
  <a href="http://www.compbio.dundee.ac.uk" title="University of Dundee, The Barton Group" >Barton Group</a></div>\r
 \r

diff --git a/website/man_about.html b/website/man_about.html
index e26dbdf..accfc75 100644 (file)
--- a/website/man_about.html
+++ b/website/man_about.html
@@ -39,7 +39,7 @@
        </div>\r
        <a href="download.html">Download</a>\r
        <a href="PublicAnnualStat" title="JABAWS usage statistics">Usage Statistics</a>\r
-    <a href="ServiceStatus" title="JABAWS webservices status">Services Status</a>\r
+     <a href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
        <a href="contacts.html">Contact Us</a>\r
     <a href="http://www.compbio.dundee.ac.uk" title="University of Dundee, The Barton Group" >Barton Group</a></div>\r
 \r

diff --git a/website/man_awscloud.html b/website/man_awscloud.html
index 2737cd6..1db271d 100644 (file)
--- a/website/man_awscloud.html
+++ b/website/man_awscloud.html
@@ -46,7 +46,7 @@
        </div>\r
 <a href="download.html">Download</a> \r
 <a href="PublicAnnualStat" title="JABAWS usage statistics">Usage Statistics</a>\r
-<a href="ServiceStatus" title="JABAWS webservices status">Services Status</a>\r
+ <a href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
 <a href="contacts.html">Contact Us</a>\r
 <a href="http://www.compbio.dundee.ac.uk" title="University of Dundee, The Barton Group" >Barton Group</a>\r
 </div>\r

diff --git a/website/man_awscloud_bs.html b/website/man_awscloud_bs.html
index 44180fb..da3106c 100644 (file)
--- a/website/man_awscloud_bs.html
+++ b/website/man_awscloud_bs.html
@@ -46,7 +46,7 @@
        </div>\r
 <a href="download.html">Download</a> \r
 <a href="PublicAnnualStat" title="JABAWS usage statistics">Usage Statistics</a>\r
-<a href="ServiceStatus" title="JABAWS webservices status">Services Status</a>\r
+ <a href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
 <a href="contacts.html">Contact Us</a>\r
 <a href="http://www.compbio.dundee.ac.uk" title="University of Dundee, The Barton Group" >Barton Group</a>\r
 </div>\r

diff --git a/website/man_awscloud_ec2.html b/website/man_awscloud_ec2.html
index 7fe85ff..1de7775 100644 (file)
--- a/website/man_awscloud_ec2.html
+++ b/website/man_awscloud_ec2.html
@@ -46,7 +46,7 @@
        </div>\r
 <a href="download.html">Download</a> \r
 <a href="PublicAnnualStat" title="JABAWS usage statistics">Usage Statistics</a>\r
-<a href="ServiceStatus" title="JABAWS webservices status">Services Status</a>\r
+ <a href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
 <a href="contacts.html">Contact Us</a>\r
 <a href="http://www.compbio.dundee.ac.uk" title="University of Dundee, The Barton Group" >Barton Group</a>\r
 </div>\r

diff --git a/website/man_client.html b/website/man_client.html
index 7b106bc..5ba58f0 100644 (file)
--- a/website/man_client.html
+++ b/website/man_client.html
@@ -41,7 +41,7 @@
        </div>\r
 <a href="download.html">Download</a> \r
 <a href="PublicAnnualStat" title="JABAWS usage statistics">Usage Statistics</a>\r
-<a href="ServiceStatus" title="JABAWS webservices status">Services Status</a>\r
+ <a href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
 <a href="contacts.html">Contact Us</a>\r
 <a href="http://www.compbio.dundee.ac.uk" title="University of Dundee, The Barton Group" >Barton Group</a>\r
 </div>\r

diff --git a/website/man_configuration.html b/website/man_configuration.html
index 7a126d9..d46dc7f 100644 (file)
--- a/website/man_configuration.html
+++ b/website/man_configuration.html
@@ -41,7 +41,7 @@
        </div>\r
 <a href="download.html">Download</a> \r
 <a href="PublicAnnualStat" title="JABAWS usage statistics">Usage Statistics</a>\r
-<a href="ServiceStatus" title="JABAWS webservices status">Services Status</a>\r
+ <a href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
 <a href="contacts.html">Contact Us</a>\r
 <a href="http://www.compbio.dundee.ac.uk" title="University of Dundee, The Barton Group" >Barton Group</a>\r
 </div>\r

diff --git a/website/man_dev.html b/website/man_dev.html
index 5180eec..f18fb8f 100644 (file)
--- a/website/man_dev.html
+++ b/website/man_dev.html
@@ -41,7 +41,7 @@
        </div>\r
 <a href="download.html">Download</a> \r
 <a href="PublicAnnualStat" title="JABAWS server usage statistics">Usage Statistics</a>\r
-<a href="ServiceStatus" title="JABAWS webservices status">Services Status</a>\r
+ <a href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
 <a href="contacts.html">Contact Us</a>\r
 <a href="http://www.compbio.dundee.ac.uk" title="University of Dundee, The Barton Group" >Barton Group</a>\r
 \r

diff --git a/website/man_server_dev.html b/website/man_server_dev.html
index 2a3f246..898bbe4 100644 (file)
--- a/website/man_server_dev.html
+++ b/website/man_server_dev.html
@@ -40,7 +40,7 @@
        </div>\r
 <a href="download.html">Download</a> \r
 <a href="PublicAnnualStat" title="JABAWS usage statistics">Usage Statistics</a>\r
-<a href="ServiceStatus" title="JABAWS webservices status">Services Status</a>\r
+ <a href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
 <a href="contacts.html">Contact Us</a>\r
 <a href="http://www.compbio.dundee.ac.uk" title="University of Dundee, The Barton Group" >Barton Group</a>\r
 </div>\r

diff --git a/website/man_servervm.html b/website/man_servervm.html
index 53391de..9075c41 100644 (file)
--- a/website/man_servervm.html
+++ b/website/man_servervm.html
@@ -41,7 +41,7 @@
        </div>\r
 <a href="download.html">Download</a> \r
 <a href="PublicAnnualStat" title="JABAWS usage statistics">Usage Statistics</a>\r
-<a href="ServiceStatus" title="JABAWS webservices status">Services Status</a>\r
+ <a href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
 <a href="contacts.html">Contact Us</a>\r
 <a href="http://www.compbio.dundee.ac.uk" title="University of Dundee, The Barton Group" >Barton Group</a>\r
 </div>\r

diff --git a/website/man_serverwar.html b/website/man_serverwar.html
index 88bc96a..16a3f60 100644 (file)
--- a/website/man_serverwar.html
+++ b/website/man_serverwar.html
@@ -41,7 +41,7 @@
        </div>\r
 <a href="download.html">Download</a> \r
 <a href="PublicAnnualStat" title="JABAWS server usage statistics">Usage Statistics</a>\r
-<a href="ServiceStatus" title="JABAWS webservices status">Services Status</a>\r
+ <a href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
 <a href="contacts.html">Contact Us</a>\r
 <a href="http://www.compbio.dundee.ac.uk" title="University of Dundee, The Barton Group" >Barton Group</a></div>\r
 \r

diff --git a/website/man_stats.html b/website/man_stats.html
index 1673c5b..aba69dd 100644 (file)
--- a/website/man_stats.html
+++ b/website/man_stats.html
@@ -41,7 +41,7 @@
        </div>\r
 <a href="download.html">Download</a> \r
 <a href="PublicAnnualStat" title="JABAWS server usage statistics">Usage Statistics</a>\r
-<a href="ServiceStatus" title="JABAWS webservices status">Services Status</a>\r
+ <a href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
 <a href="contacts.html">Contact Us</a>\r
 <a href="http://www.compbio.dundee.ac.uk" title="University of Dundee, The Barton Group" >Barton Group</a>\r
 </div>\r

diff --git a/website/manual_qs_client.html b/website/manual_qs_client.html
index f5ff600..3684057 100644 (file)
--- a/website/manual_qs_client.html
+++ b/website/manual_qs_client.html
@@ -26,7 +26,7 @@
     <a href="man_about.html">Manual</a> \r
        <a href="download.html">Download</a>\r
     <a href="PublicAnnualStat" title="JABAWS server usage statistics">Usage Statistics</a>\r
-       <a href="ServiceStatus" title="JABAWS webservices status">Services Status</a>\r
+        <a href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
        <a href="contacts.html">Contact Us</a>\r
     <a href="http://www.compbio.dundee.ac.uk" title="University of Dundee, The Barton Group" >Barton Group</a></div>\r
 \r

diff --git a/website/manual_qs_va.html b/website/manual_qs_va.html
index 7c5de4f..2745c3d 100644 (file)
--- a/website/manual_qs_va.html
+++ b/website/manual_qs_va.html
@@ -26,7 +26,7 @@
     <a href="man_about.html">Manual</a> \r
        <a href="download.html">Download</a>\r
     <a href="PublicAnnualStat" title="JABAWS server usage statistics">Usage Statistics</a>\r
-       <a href="ServiceStatus" title="JABAWS webservices status">Services Status</a>\r
+        <a href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
        <a href="contacts.html">Contact Us</a>\r
     <a href="http://www.compbio.dundee.ac.uk" title="University of Dundee, The Barton Group" >Barton Group</a></div>\r
 <!-- panel end-->\r

diff --git a/website/manual_qs_war.html b/website/manual_qs_war.html
index 9ce3951..61844ba 100644 (file)
--- a/website/manual_qs_war.html
+++ b/website/manual_qs_war.html
@@ -27,7 +27,7 @@
     <a href="man_about.html">Manual</a> \r
        <a href="download.html">Download</a>\r
     <a href="PublicAnnualStat" title="JABAWS server usage statistics">Usage Statistics</a>\r
-       <a href="ServiceStatus" title="JABAWS webservices status">Services Status</a>\r
+        <a href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
        <a href="contacts.html">Contact Us</a>\r
     <a href="http://www.compbio.dundee.ac.uk" title="University of Dundee, The Barton Group" >Barton Group</a>\r
 \r
@@ -75,20 +75,15 @@
   <li>Drop the JABAWS WAR file into <span class="hightlight">tomcat/webapps</span> directory.</li>\r
   <li>(Re)start the Tomcat.</li>\r
   <li>Once the tomcat has started, it should automatically unpack the WAR into the webapps directory (if it doesn't, then you'll need to do this manually, it's just a zip archive in the end).</li>\r
-  <li> You then need to complete the installation of the executable binaries (this is optional if you use 32 bit version of Linux):</li>\r
-   <ul>\r
-     <li>If you are on Linux or Mac (OSX intel Mac only) <br/>\r
-       <span class="hightlight">cd</span> to <span class="hightlight"> webapps/jabaws/binaries/src/</span> and execute <span class="hightlight">./setexecflag.sh </span> script to ensure the JABAWS binaries can be executed. </li>\r
-     <li>If you are on other unix-like architecture with gnu compilers available or you'd like to get a maximum performance:</li>\r
-     <li> <span class="hightlight">cd</span> to <span class="hightlight">webapps/jabaws/binaries/src/</span> and execute <span class="hightlight">./compilebin.sh  </span> script to compile all binaries JABAWS depends on. </li>\r
-     <li><span class="hightlight">cd</span> to <span class="hightlight"> webapps/jabaws/binaries/src/ </span>and execute <span class="hightlight">./setexecflag.sh </span> script. </li>\r
-   </ul>\r
+  <li> If you are on Mac or other unix-like architecture with GNU compilers available or you'd like to get a maximum performance </li>\r
+   <ul><li> <span class="hightlight">cd</span> to <span class="hightlight">webapps/jabaws/binaries/src/</span> and execute <span class="hightlight">./compilebin.sh  </span> script to compile all binaries JABAWS depends on. </li>\r
+     </ul>\r
 </ol> \r
 \r
 <h3>Testing</h3>\r
 <p>You can test that your JABAWS server is working in several ways.</p>\r
 <ol>\r
-<li>Visit Services Status page available from the main menu using your web browser.</li>\r
+<li>Visit Services Status page available from the JABAWS main page using your web browser.</li>\r
 \r
 <li>If you are working on the command line, then use the command line client shipped with the JABAWS war to test it by running:\r
   <span class="code">java -jar &lt;Path to tomcat WebApp directory&gt;/jabaws/WEB-INF/lib/jaba-client.jar -h=http://localhost:8080/jabaws</span>\r

diff --git a/website/quick_start.html b/website/quick_start.html
index 242c148..5fb3cc5 100644 (file)
--- a/website/quick_start.html
+++ b/website/quick_start.html
@@ -26,7 +26,7 @@
     <a href="man_about.html">Manual</a> \r
        <a href="download.html">Download</a>\r
     <a href="PublicAnnualStat" title="JABAWS server usage statistics">Usage Statistics</a>\r
-       <a href="ServiceStatus" title="JABAWS webservices status">Services Status</a>\r
+       <a href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
        <a href="contacts.html">Contact Us</a>\r
     <a href="http://www.compbio.dundee.ac.uk" title="University of Dundee, The Barton Group" >Barton Group</a></div>\r
 \r