Replace Progs/RNAalifold with x64 binary and add all other programs
authorSasha Sherstnev <a.sherstnev@dundee.ac.uk>
Thu, 5 Sep 2013 10:57:22 +0000 (11:57 +0100)
committerSasha Sherstnev <a.sherstnev@dundee.ac.uk>
Thu, 5 Sep 2013 10:57:22 +0000 (11:57 +0100)
25 files changed:
binaries/src/ViennaRNA/Progs/RNA2Dfold [new file with mode: 0755]
binaries/src/ViennaRNA/Progs/RNALalifold [new file with mode: 0755]
binaries/src/ViennaRNA/Progs/RNALfold [new file with mode: 0755]
binaries/src/ViennaRNA/Progs/RNAPKplex [new file with mode: 0755]
binaries/src/ViennaRNA/Progs/RNAaliduplex [new file with mode: 0755]
binaries/src/ViennaRNA/Progs/RNAalifold
binaries/src/ViennaRNA/Progs/RNAcofold [new file with mode: 0755]
binaries/src/ViennaRNA/Progs/RNAdistance [new file with mode: 0755]
binaries/src/ViennaRNA/Progs/RNAduplex [new file with mode: 0755]
binaries/src/ViennaRNA/Progs/RNAeval [new file with mode: 0755]
binaries/src/ViennaRNA/Progs/RNAfold [new file with mode: 0755]
binaries/src/ViennaRNA/Progs/RNAheat [new file with mode: 0755]
binaries/src/ViennaRNA/Progs/RNAinverse [new file with mode: 0755]
binaries/src/ViennaRNA/Progs/RNApaln [new file with mode: 0755]
binaries/src/ViennaRNA/Progs/RNAparconv [new file with mode: 0755]
binaries/src/ViennaRNA/Progs/RNApdist [new file with mode: 0755]
binaries/src/ViennaRNA/Progs/RNAplex [new file with mode: 0755]
binaries/src/ViennaRNA/Progs/RNAplfold [new file with mode: 0755]
binaries/src/ViennaRNA/Progs/RNAplot [new file with mode: 0755]
binaries/src/ViennaRNA/Progs/RNAsnoop [new file with mode: 0755]
binaries/src/ViennaRNA/Progs/RNAsubopt [new file with mode: 0755]
binaries/src/ViennaRNA/Progs/RNAup [new file with mode: 0755]
binaries/src/ViennaRNA/RNAforester/src/RNAforester [new file with mode: 0755]
binaries/src/ViennaRNA/Utils/b2ct [new file with mode: 0755]
binaries/src/ViennaRNA/Utils/popt [new file with mode: 0755]

diff --git a/binaries/src/ViennaRNA/Progs/RNA2Dfold b/binaries/src/ViennaRNA/Progs/RNA2Dfold
new file mode 100755 (executable)
index 0000000..626292e
Binary files /dev/null and b/binaries/src/ViennaRNA/Progs/RNA2Dfold differ
diff --git a/binaries/src/ViennaRNA/Progs/RNALalifold b/binaries/src/ViennaRNA/Progs/RNALalifold
new file mode 100755 (executable)
index 0000000..1ef6755
Binary files /dev/null and b/binaries/src/ViennaRNA/Progs/RNALalifold differ
diff --git a/binaries/src/ViennaRNA/Progs/RNALfold b/binaries/src/ViennaRNA/Progs/RNALfold
new file mode 100755 (executable)
index 0000000..e8f13bb
Binary files /dev/null and b/binaries/src/ViennaRNA/Progs/RNALfold differ
diff --git a/binaries/src/ViennaRNA/Progs/RNAPKplex b/binaries/src/ViennaRNA/Progs/RNAPKplex
new file mode 100755 (executable)
index 0000000..2d21d87
Binary files /dev/null and b/binaries/src/ViennaRNA/Progs/RNAPKplex differ
diff --git a/binaries/src/ViennaRNA/Progs/RNAaliduplex b/binaries/src/ViennaRNA/Progs/RNAaliduplex
new file mode 100755 (executable)
index 0000000..17788a8
Binary files /dev/null and b/binaries/src/ViennaRNA/Progs/RNAaliduplex differ
index 4def1af..42d7fcf 100755 (executable)
Binary files a/binaries/src/ViennaRNA/Progs/RNAalifold and b/binaries/src/ViennaRNA/Progs/RNAalifold differ
diff --git a/binaries/src/ViennaRNA/Progs/RNAcofold b/binaries/src/ViennaRNA/Progs/RNAcofold
new file mode 100755 (executable)
index 0000000..e3221cb
Binary files /dev/null and b/binaries/src/ViennaRNA/Progs/RNAcofold differ
diff --git a/binaries/src/ViennaRNA/Progs/RNAdistance b/binaries/src/ViennaRNA/Progs/RNAdistance
new file mode 100755 (executable)
index 0000000..0cfa379
Binary files /dev/null and b/binaries/src/ViennaRNA/Progs/RNAdistance differ
diff --git a/binaries/src/ViennaRNA/Progs/RNAduplex b/binaries/src/ViennaRNA/Progs/RNAduplex
new file mode 100755 (executable)
index 0000000..7714de6
Binary files /dev/null and b/binaries/src/ViennaRNA/Progs/RNAduplex differ
diff --git a/binaries/src/ViennaRNA/Progs/RNAeval b/binaries/src/ViennaRNA/Progs/RNAeval
new file mode 100755 (executable)
index 0000000..88183d5
Binary files /dev/null and b/binaries/src/ViennaRNA/Progs/RNAeval differ
diff --git a/binaries/src/ViennaRNA/Progs/RNAfold b/binaries/src/ViennaRNA/Progs/RNAfold
new file mode 100755 (executable)
index 0000000..48cd281
Binary files /dev/null and b/binaries/src/ViennaRNA/Progs/RNAfold differ
diff --git a/binaries/src/ViennaRNA/Progs/RNAheat b/binaries/src/ViennaRNA/Progs/RNAheat
new file mode 100755 (executable)
index 0000000..782b369
Binary files /dev/null and b/binaries/src/ViennaRNA/Progs/RNAheat differ
diff --git a/binaries/src/ViennaRNA/Progs/RNAinverse b/binaries/src/ViennaRNA/Progs/RNAinverse
new file mode 100755 (executable)
index 0000000..7ad9066
Binary files /dev/null and b/binaries/src/ViennaRNA/Progs/RNAinverse differ
diff --git a/binaries/src/ViennaRNA/Progs/RNApaln b/binaries/src/ViennaRNA/Progs/RNApaln
new file mode 100755 (executable)
index 0000000..0e37a0c
Binary files /dev/null and b/binaries/src/ViennaRNA/Progs/RNApaln differ
diff --git a/binaries/src/ViennaRNA/Progs/RNAparconv b/binaries/src/ViennaRNA/Progs/RNAparconv
new file mode 100755 (executable)
index 0000000..5d8d707
Binary files /dev/null and b/binaries/src/ViennaRNA/Progs/RNAparconv differ
diff --git a/binaries/src/ViennaRNA/Progs/RNApdist b/binaries/src/ViennaRNA/Progs/RNApdist
new file mode 100755 (executable)
index 0000000..6e6bc4a
Binary files /dev/null and b/binaries/src/ViennaRNA/Progs/RNApdist differ
diff --git a/binaries/src/ViennaRNA/Progs/RNAplex b/binaries/src/ViennaRNA/Progs/RNAplex
new file mode 100755 (executable)
index 0000000..3a4d9ca
Binary files /dev/null and b/binaries/src/ViennaRNA/Progs/RNAplex differ
diff --git a/binaries/src/ViennaRNA/Progs/RNAplfold b/binaries/src/ViennaRNA/Progs/RNAplfold
new file mode 100755 (executable)
index 0000000..e80f801
Binary files /dev/null and b/binaries/src/ViennaRNA/Progs/RNAplfold differ
diff --git a/binaries/src/ViennaRNA/Progs/RNAplot b/binaries/src/ViennaRNA/Progs/RNAplot
new file mode 100755 (executable)
index 0000000..266eb6b
Binary files /dev/null and b/binaries/src/ViennaRNA/Progs/RNAplot differ
diff --git a/binaries/src/ViennaRNA/Progs/RNAsnoop b/binaries/src/ViennaRNA/Progs/RNAsnoop
new file mode 100755 (executable)
index 0000000..3582fb1
Binary files /dev/null and b/binaries/src/ViennaRNA/Progs/RNAsnoop differ
diff --git a/binaries/src/ViennaRNA/Progs/RNAsubopt b/binaries/src/ViennaRNA/Progs/RNAsubopt
new file mode 100755 (executable)
index 0000000..fabeb22
Binary files /dev/null and b/binaries/src/ViennaRNA/Progs/RNAsubopt differ
diff --git a/binaries/src/ViennaRNA/Progs/RNAup b/binaries/src/ViennaRNA/Progs/RNAup
new file mode 100755 (executable)
index 0000000..1ada9e8
Binary files /dev/null and b/binaries/src/ViennaRNA/Progs/RNAup differ
diff --git a/binaries/src/ViennaRNA/RNAforester/src/RNAforester b/binaries/src/ViennaRNA/RNAforester/src/RNAforester
new file mode 100755 (executable)
index 0000000..a0b5907
Binary files /dev/null and b/binaries/src/ViennaRNA/RNAforester/src/RNAforester differ
diff --git a/binaries/src/ViennaRNA/Utils/b2ct b/binaries/src/ViennaRNA/Utils/b2ct
new file mode 100755 (executable)
index 0000000..84054ad
Binary files /dev/null and b/binaries/src/ViennaRNA/Utils/b2ct differ
diff --git a/binaries/src/ViennaRNA/Utils/popt b/binaries/src/ViennaRNA/Utils/popt
new file mode 100755 (executable)
index 0000000..60b59d6
Binary files /dev/null and b/binaries/src/ViennaRNA/Utils/popt differ