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Revised exercise 1 - launching Jalview in line with 2.11.1.2 changes
author
Jim Procter
<jprocter@issues.jalview.org>
Fri, 2 Oct 2020 16:03:13 +0000
(17:03 +0100)
committer
Jim Procter
<jprocter@issues.jalview.org>
Fri, 2 Oct 2020 16:03:13 +0000
(17:03 +0100)
TheJalviewTutorial.tex
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a/TheJalviewTutorial.tex
b/TheJalviewTutorial.tex
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--- a/
TheJalviewTutorial.tex
+++ b/
TheJalviewTutorial.tex
@@
-328,13
+328,13
@@
Preferences...} menu on the desktop. A `Preference'
dialog box opens, untick the box adjacent to the `Open file' entry in the
`Visual' preferences tab.
Click {\sl OK} to save the preferences.}
dialog box opens, untick the box adjacent to the `Open file' entry in the
`Visual' preferences tab.
Click {\sl OK} to save the preferences.}
-%%\exstep{Launch another Jalview workbench from the web site by clicking on the
-%%The example alignment should not be loaded as Jalview starts up.}
+%%\exstep{Quit Jalview and open it again to check that the
+%%The example alignment is not loaded wehn Jalview starts up.}
\exstep{To reload the original demo file select the
{\em File$\Rightarrow$ From URL} entry in the Desktop menu. Click on
the URL history button (a downward arrow on the right hand side of the dialog
\exstep{To reload the original demo file select the
{\em File$\Rightarrow$ From URL} entry in the Desktop menu. Click on
the URL history button (a downward arrow on the right hand side of the dialog
-box) to view the files, select exampleFile\_2\_7.jar
-(\url{http://www.jalview.org/examples/exampleFile_2_7.jar})
+box) to view the files, select exampleFile\_2\_7.jvp
+(shown as \url{https://www.jalview.org/examples/exampleFile_2_7.jvp})
then click {\sl OK}.}
\begin{list}{$\circ$}{\newline
\newline {\bf
then click {\sl OK}.}
\begin{list}{$\circ$}{\newline
\newline {\bf
@@
-344,8
+344,6
@@
then click {\sl OK}.}
to the {\sl Tools $\Rightarrow$
Preferences...} menu on the desktop. Then tick the `Open file' entry of `Visual'
preferences tab, type in the URL of the sequence you want to load.}
to the {\sl Tools $\Rightarrow$
Preferences...} menu on the desktop. Then tick the `Open file' entry of `Visual'
preferences tab, type in the URL of the sequence you want to load.}
-%%\item {You may want to move the jalview.jnlp file from your {\bf downloads} to another folder.}
-%%\item {Opening Jalview via the jnlp file will also allow Jalview to be launched offline.}
\end{list}
{\bf See the video at:
\end{list}
{\bf See the video at: