src/jalview/gui/ChimeraXViewFrame.java

   1 package jalview.gui;
   2
   3 import jalview.datamodel.PDBEntry;
   4 import jalview.datamodel.SequenceI;
   5 import jalview.gui.StructureViewer.ViewerType;
   6
   7 /**
   8  * A class for the gui frame through which Jalview interacts with the ChimeraX
   9  * structure viewer. Mostly the same as ChimeraViewFrame with a few overrides
  10  * for the differences.
  11  *
  12  * @author gmcarstairs
  13  *
  14  */
  15 public class ChimeraXViewFrame extends ChimeraViewFrame
  16 {
  17
  18   public ChimeraXViewFrame(PDBEntry pdb, SequenceI[] seqsForPdb,
  19           String[] chains, AlignmentPanel ap)
  20   {
  21     super(pdb, seqsForPdb, chains, ap);
  22   }
  23
  24   public ChimeraXViewFrame(PDBEntry[] pdbsForFile, boolean superposeAdded,
  25           SequenceI[][] theSeqs, AlignmentPanel ap)
  26   {
  27     super(pdbsForFile, superposeAdded, theSeqs, ap);
  28   }
  29
  30   /**
  31    * Constructor given a session file to be loaded
  32    *
  33    * @param chimeraSessionFile
  34    * @param alignPanel
  35    * @param pdbArray
  36    * @param seqsArray
  37    * @param colourByChimera
  38    * @param colourBySequence
  39    * @param newViewId
  40    */
  41   public ChimeraXViewFrame(String chimeraSessionFile,
  42           AlignmentPanel alignPanel, PDBEntry[] pdbArray,
  43           SequenceI[][] seqsArray, boolean colourByChimera,
  44           boolean colourBySequence, String newViewId)
  45   {
  46     super(chimeraSessionFile, alignPanel, pdbArray, seqsArray,
  47             colourByChimera, colourBySequence, newViewId);
  48   }
  49
  50   @Override
  51   public ViewerType getViewerType()
  52   {
  53     return ViewerType.CHIMERAX;
  54   }
  55
  56   @Override
  57   protected String getViewerName()
  58   {
  59     return "ChimeraX";
  60   }
  61
  62   @Override
  63   protected JalviewChimeraBindingModel newBindingModel(AlignmentPanel ap,
  64           PDBEntry[] pdbentrys, SequenceI[][] seqs)
  65   {
  66     return new JalviewChimeraXBindingModel(this,
  67             ap.getStructureSelectionManager(), pdbentrys, seqs, null);
  68   }
  69
  70   @Override
  71   protected void initMenus()
  72   {
  73     super.initMenus();
  74
  75     viewerActionMenu.setText("ChimeraX");
  76   }
  77
  78 }