import org.gradle.plugins.ide.eclipse.model.Library
import java.security.MessageDigest
import java.util.regex.Matcher
+import java.util.concurrent.Executors
+import java.util.concurrent.Future
+import java.util.concurrent.ScheduledExecutorService
+import java.util.concurrent.TimeUnit
import groovy.transform.ExternalizeMethods
import groovy.util.XmlParser
import groovy.xml.XmlUtil
id "com.diffplug.gradle.spotless" version "3.28.0"
id 'com.github.johnrengelman.shadow' version '4.0.3'
id 'com.install4j.gradle' version '10.0.3'
- id 'com.dorongold.task-tree' version '2.1.0' // only needed to display task dependency tree with gradle task1 [task2 ...] taskTree
+ id 'com.dorongold.task-tree' version '2.1.1' // only needed to display task dependency tree with gradle task1 [task2 ...] taskTree
id 'com.palantir.git-version' version '0.13.0' apply false
}
jalviewjsJ2sAltSettingsFileName = string("${jalviewDir}/${jalviewjs_j2s_alt_settings}")
jalviewjsJ2sProps = null
jalviewjsJ2sPlugin = jalviewjs_j2s_plugin
+ jalviewjsStderrLaunchFilename = "${jalviewjsSiteDir}/"+(file(jalviewjs_stderr_launch).getName())
eclipseWorkspace = null
eclipseBinary = string("")
eclipseVersion = string("")
eclipseDebug = false
+
+ jalviewjsChromiumUserDir = "${jalviewjsBuildDir}/${jalviewjs_chromium_user_dir}"
+ jalviewjsChromiumProfileDir = "${ext.jalviewjsChromiumUserDir}/${jalviewjs_chromium_profile_name}"
+
// ENDEXT
}
// JBP->BS should the print statement in doFirst refer to compile_target_compatibility ?
sourceCompatibility = compile_source_compatibility
targetCompatibility = compile_target_compatibility
- options.compilerArgs = additional_compiler_args
+ options.compilerArgs += additional_compiler_args
options.encoding = "UTF-8"
doFirst {
print ("Setting target compatibility to "+compile_target_compatibility+"\n")
compileTestJava {
sourceCompatibility = compile_source_compatibility
targetCompatibility = compile_target_compatibility
- options.compilerArgs = additional_compiler_args
+ options.compilerArgs += additional_compiler_args
doFirst {
print ("Setting target compatibility to "+targetCompatibility+"\n")
}
compileJava.dependsOn prepare
run.dependsOn compileJava
-//run.dependsOn prepare
+compileTestJava.dependsOn compileJava
+
-//testReportDirName = "test-reports" // note that test workingDir will be $jalviewDir
test {
- dependsOn prepare
+ group = "Verification"
+ description = "Runs all testTaskN tasks)"
if (useClover) {
dependsOn cloverClasses
- } else { //?
- dependsOn compileJava //?
+ } else { //?
+ dependsOn testClasses
+ }
+
+ // not running tests in this task
+ exclude "**/*"
+}
+/* testTask0 is the main test task */
+task testTask0(type: Test) {
+ group = "Verification"
+ description = "The main test task. Runs all non-testTaskN-labelled tests (unless excluded)"
+ useTestNG() {
+ includeGroups testng_groups.split(",")
+ excludeGroups testng_excluded_groups.split(",")
+ tasks.withType(Test).matching {it.name.startsWith("testTask") && it.name != name}.all {t -> excludeGroups t.name}
+ preserveOrder true
+ useDefaultListeners=true
}
+}
+/* separated tests */
+task testTask1(type: Test) {
+ group = "Verification"
+ description = "Tests that need to be isolated from the main test run"
useTestNG() {
- includeGroups testng_groups
- excludeGroups testng_excluded_groups
+ includeGroups name
+ excludeGroups testng_excluded_groups.split(",")
preserveOrder true
useDefaultListeners=true
}
+}
+
+/* insert more testTaskNs here -- change N to next digit or other string */
+/*
+task testTaskN(type: Test) {
+ group = "Verification"
+ description = "Tests that need to be isolated from the main test run"
+ useTestNG() {
+ includeGroups name
+ excludeGroups testng_excluded_groups.split(",")
+ preserveOrder true
+ useDefaultListeners=true
+ }
+}
+*/
+
+/*
+ * adapted from https://medium.com/@wasyl/pretty-tests-summary-in-gradle-744804dd676c
+ * to summarise test results from all Test tasks
+ */
+/* START of test tasks results summary */
+import groovy.time.TimeCategory
+import org.gradle.api.tasks.testing.logging.TestExceptionFormat
+import org.gradle.api.tasks.testing.logging.TestLogEvent
+rootProject.ext.testsResults = [] // Container for tests summaries
+
+tasks.withType(Test).matching {t -> t.getName().startsWith("testTask")}.all { testTask ->
+
+ // from original test task
+ if (useClover) {
+ dependsOn cloverClasses
+ } else { //?
+ dependsOn testClasses //?
+ }
+
+ // run main tests first
+ if (!testTask.name.equals("testTask0"))
+ testTask.mustRunAfter "testTask0"
+ testTask.testLogging { logging ->
+ events TestLogEvent.FAILED
+// TestLogEvent.SKIPPED,
+// TestLogEvent.STANDARD_OUT,
+// TestLogEvent.STANDARD_ERROR
+
+ exceptionFormat TestExceptionFormat.FULL
+ showExceptions true
+ showCauses true
+ showStackTraces true
+
+ info.events = [ TestLogEvent.FAILED ]
+ }
+
+ if (OperatingSystem.current().isMacOsX()) {
+ testTask.systemProperty "apple.awt.UIElement", "true"
+ testTask.environment "JAVA_TOOL_OPTIONS", "-Dapple.awt.UIElement=true"
+ }
+
+
+ ignoreFailures = true // Always try to run all tests for all modules
+
+ afterSuite { desc, result ->
+ if (desc.parent)
+ return // Only summarize results for whole modules
+
+ def resultsInfo = [testTask.project.name, testTask.name, result, TimeCategory.minus(new Date(result.endTime), new Date(result.startTime)), testTask.reports.html.entryPoint]
+
+ rootProject.ext.testsResults.add(resultsInfo)
+ }
+
+ // from original test task
maxHeapSize = "1024m"
workingDir = jalviewDir
jvmArgs += additional_compiler_args
doFirst {
+ // this is not perfect yet -- we should only add the commandLineIncludePatterns to the
+ // testTasks that include the tests, and exclude all from the others.
+ // get --test argument
+ filter.commandLineIncludePatterns = test.filter.commandLineIncludePatterns
+ // do something with testTask.getCandidateClassFiles() to see if the test should silently finish because of the
+ // commandLineIncludePatterns not matching anything. Instead we are doing setFailOnNoMatchingTests(false) below
+
+
if (useClover) {
println("Running tests " + (useClover?"WITH":"WITHOUT") + " clover")
}
}
+
+
+ /* don't fail on no matching tests (so --tests will run across all testTasks) */
+ testTask.filter.setFailOnNoMatchingTests(false)
+
+ /* ensure the "test" task dependsOn all the testTasks */
+ test.dependsOn testTask
}
+gradle.buildFinished {
+ def allResults = rootProject.ext.testsResults
+
+ if (!allResults.isEmpty()) {
+ printResults allResults
+ allResults.each {r ->
+ if (r[2].resultType == TestResult.ResultType.FAILURE)
+ throw new GradleException("Failed tests!")
+ }
+ }
+}
+
+private static String colString(styler, col, colour, text) {
+ return col?"${styler[colour](text)}":text
+}
+
+private static String getSummaryLine(s, pn, tn, rt, rc, rs, rf, rsk, t, col) {
+ def colour = 'black'
+ def text = rt
+ def nocol = false
+ if (rc == 0) {
+ text = "-----"
+ nocol = true
+ } else {
+ switch(rt) {
+ case TestResult.ResultType.SUCCESS:
+ colour = 'green'
+ break;
+ case TestResult.ResultType.FAILURE:
+ colour = 'red'
+ break;
+ default:
+ nocol = true
+ break;
+ }
+ }
+ StringBuilder sb = new StringBuilder()
+ sb.append("${pn}")
+ if (tn != null)
+ sb.append(":${tn}")
+ sb.append(" results: ")
+ sb.append(colString(s, col && !nocol, colour, text))
+ sb.append(" (")
+ sb.append("${rc} tests, ")
+ sb.append(colString(s, col && rs > 0, 'green', rs))
+ sb.append(" successes, ")
+ sb.append(colString(s, col && rf > 0, 'red', rf))
+ sb.append(" failures, ")
+ sb.append("${rsk} skipped) in ${t}")
+ return sb.toString()
+}
+
+private static void printResults(allResults) {
+
+ // styler from https://stackoverflow.com/a/56139852
+ def styler = 'black red green yellow blue magenta cyan white'.split().toList().withIndex(30).collectEntries { key, val -> [(key) : { "\033[${val}m${it}\033[0m" }] }
+
+ def maxLength = 0
+ def failedTests = false
+ def summaryLines = []
+ def totalcount = 0
+ def totalsuccess = 0
+ def totalfail = 0
+ def totalskip = 0
+ def totaltime = TimeCategory.getSeconds(0)
+ // sort on project name then task name
+ allResults.sort {a, b -> a[0] == b[0]? a[1]<=>b[1]:a[0] <=> b[0]}.each {
+ def projectName = it[0]
+ def taskName = it[1]
+ def result = it[2]
+ def time = it[3]
+ def report = it[4]
+ def summaryCol = getSummaryLine(styler, projectName, taskName, result.resultType, result.testCount, result.successfulTestCount, result.failedTestCount, result.skippedTestCount, time, true)
+ def summaryPlain = getSummaryLine(styler, projectName, taskName, result.resultType, result.testCount, result.successfulTestCount, result.failedTestCount, result.skippedTestCount, time, false)
+ def reportLine = "Report file: ${report}"
+ def ls = summaryPlain.length()
+ def lr = reportLine.length()
+ def m = [ls, lr].max()
+ if (m > maxLength)
+ maxLength = m
+ def info = [ls, summaryCol, reportLine]
+ summaryLines.add(info)
+ failedTests |= result.resultType == TestResult.ResultType.FAILURE
+ totalcount += result.testCount
+ totalsuccess += result.successfulTestCount
+ totalfail += result.failedTestCount
+ totalskip += result.skippedTestCount
+ totaltime += time
+ }
+ def totalSummaryCol = getSummaryLine(styler, "OVERALL", "", failedTests?TestResult.ResultType.FAILURE:TestResult.ResultType.SUCCESS, totalcount, totalsuccess, totalfail, totalskip, totaltime, true)
+ def totalSummaryPlain = getSummaryLine(styler, "OVERALL", "", failedTests?TestResult.ResultType.FAILURE:TestResult.ResultType.SUCCESS, totalcount, totalsuccess, totalfail, totalskip, totaltime, false)
+ def tls = totalSummaryPlain.length()
+ if (tls > maxLength)
+ maxLength = tls
+ def info = [tls, totalSummaryCol, null]
+ summaryLines.add(info)
+
+ def allSummaries = []
+ for(sInfo : summaryLines) {
+ def ls = sInfo[0]
+ def summary = sInfo[1]
+ def report = sInfo[2]
+
+ StringBuilder sb = new StringBuilder()
+ sb.append("│" + summary + " " * (maxLength - ls) + "│")
+ if (report != null) {
+ sb.append("\n│" + report + " " * (maxLength - report.length()) + "│")
+ }
+ allSummaries += sb.toString()
+ }
+
+ println "┌${"${"─" * maxLength}"}┐"
+ println allSummaries.join("\n├${"${"─" * maxLength}"}┤\n")
+ println "└${"${"─" * maxLength}"}┘"
+}
+/* END of test tasks results summary */
+
task compileLinkCheck(type: JavaCompile) {
options.fork = true
props.put("getdown_txt_ui.instant_background_image", "${getdownImagesBuildDir}/${getdown_instant_background_image}")
props.put("getdown_txt_ui.error_background", "${getdownImagesBuildDir}/${getdown_error_background}")
props.put("getdown_txt_ui.progress_image", "${getdownImagesBuildDir}/${getdown_progress_image}")
- props.put("getdown_txt_ui.icon", "${getdownImagesBuildDir}/${getdown_icon}")
- props.put("getdown_txt_ui.mac_dock_icon", "${getdownImagesBuildDir}/${getdown_mac_dock_icon}")
+ props.put("getdown_txt_ui.icon", "${getdownImagesDir}/${getdown_icon}")
+ props.put("getdown_txt_ui.mac_dock_icon", "${getdownImagesDir}/${getdown_mac_dock_icon}")
}
props.put("getdown_txt_title", jalview_name)
'WRAPPER_LINK': getdownWrapperLink,
'BASH_WRAPPER_SCRIPT': getdown_bash_wrapper_script,
'POWERSHELL_WRAPPER_SCRIPT': getdown_powershell_wrapper_script,
+ 'BATCH_WRAPPER_SCRIPT': getdown_batch_wrapper_script,
'WRAPPER_SCRIPT_BIN_DIR': getdown_wrapper_script_dir,
'INSTALLER_NAME': install4jInstallerName,
'INSTALL4J_UTILS_DIR': install4j_utils_dir,
}
+task jalviewjsCopyStderrLaunchFile(type: Copy) {
+ from file(jalviewjs_stderr_launch)
+ into jalviewjsSiteDir
+
+ inputs.file jalviewjs_stderr_launch
+ outputs.file jalviewjsStderrLaunchFilename
+}
+
+task cleanJalviewjsChromiumUserDir {
+ doFirst {
+ delete jalviewjsChromiumUserDir
+ }
+ outputs.dir jalviewjsChromiumUserDir
+ // always run when depended on
+ outputs.upToDateWhen { !file(jalviewjsChromiumUserDir).exists() }
+}
+
+task jalviewjsChromiumProfile {
+ dependsOn cleanJalviewjsChromiumUserDir
+ mustRunAfter cleanJalviewjsChromiumUserDir
+
+ def firstRun = file("${jalviewjsChromiumUserDir}/First Run")
+
+ doFirst {
+ mkdir jalviewjsChromiumProfileDir
+ firstRun.text = ""
+ }
+ outputs.file firstRun
+}
+
+task jalviewjsLaunchTest {
+ group "Test"
+ description "Check JalviewJS opens in a browser"
+ dependsOn jalviewjsBuildSite
+ dependsOn jalviewjsCopyStderrLaunchFile
+ dependsOn jalviewjsChromiumProfile
+
+ def macOS = OperatingSystem.current().isMacOsX()
+ def chromiumBinary = macOS ? jalviewjs_macos_chromium_binary : jalviewjs_chromium_binary
+ if (chromiumBinary.startsWith("~/")) {
+ chromiumBinary = System.getProperty("user.home") + chromiumBinary.substring(1)
+ }
+
+ def stdout
+ def stderr
+ doFirst {
+ def timeoutms = Integer.valueOf(jalviewjs_chromium_overall_timeout) * 1000
+
+ def binary = file(chromiumBinary)
+ if (!binary.exists()) {
+ throw new StopExecutionException("Could not find chromium binary '${chromiumBinary}'. Cannot run task ${name}.")
+ }
+ stdout = new ByteArrayOutputStream()
+ stderr = new ByteArrayOutputStream()
+ def execStdout
+ def execStderr
+ if (jalviewjs_j2s_to_console.equals("true")) {
+ execStdout = new org.apache.tools.ant.util.TeeOutputStream(
+ stdout,
+ System.out)
+ execStderr = new org.apache.tools.ant.util.TeeOutputStream(
+ stderr,
+ System.err)
+ } else {
+ execStdout = stdout
+ execStderr = stderr
+ }
+ def execArgs = [
+ "--no-sandbox", // --no-sandbox IS USED BY THE THORIUM APPIMAGE ON THE BUILDSERVER
+ "--headless=new",
+ "--disable-gpu",
+ "--timeout=${timeoutms}",
+ "--virtual-time-budget=${timeoutms}",
+ "--user-data-dir=${jalviewDirAbsolutePath}/${jalviewjsBuildDir}/${jalviewjs_chromium_user_dir}",
+ "--profile-directory=${jalviewjs_chromium_profile_name}",
+ "--allow-file-access-from-files",
+ "--enable-logging=stderr",
+ "file://${jalviewDirAbsolutePath}/${jalviewjsStderrLaunchFilename}"
+ ]
+
+ if (true || macOS) {
+ ScheduledExecutorService executor = Executors.newScheduledThreadPool(3);
+ Future f1 = executor.submit(
+ () -> {
+ exec {
+ standardOutput = execStdout
+ errorOutput = execStderr
+ executable(chromiumBinary)
+ args(execArgs)
+ println "COMMAND: '"+commandLine.join(" ")+"'"
+ }
+ executor.shutdownNow()
+ }
+ )
+
+ def noChangeBytes = 0
+ def noChangeIterations = 0
+ executor.scheduleAtFixedRate(
+ () -> {
+ String stderrString = stderr.toString()
+ // shutdown the task if we have a success string
+ if (stderrString.contains(jalviewjs_desktop_init_string)) {
+ f1.cancel()
+ Thread.sleep(1000)
+ executor.shutdownNow()
+ }
+ // if no change in stderr for 10s then also end
+ if (noChangeIterations >= jalviewjs_chromium_idle_timeout) {
+ executor.shutdownNow()
+ }
+ if (stderrString.length() == noChangeBytes) {
+ noChangeIterations++
+ } else {
+ noChangeBytes = stderrString.length()
+ noChangeIterations = 0
+ }
+ },
+ 1, 1, TimeUnit.SECONDS)
+
+ executor.schedule(new Runnable(){
+ public void run(){
+ f1.cancel()
+ executor.shutdownNow()
+ }
+ }, timeoutms, TimeUnit.MILLISECONDS)
+
+ executor.awaitTermination(timeoutms+10000, TimeUnit.MILLISECONDS)
+ executor.shutdownNow()
+ }
+
+ }
+
+ doLast {
+ def found = false
+ stderr.toString().eachLine { line ->
+ if (line.contains(jalviewjs_desktop_init_string)) {
+ println("Found line '"+line+"'")
+ found = true
+ return
+ }
+ }
+ if (!found) {
+ throw new GradleException("Could not find evidence of Desktop launch in JalviewJS.")
+ }
+ }
+}
+
+
task jalviewjs {
group "JalviewJS"
- description "Build the site"
+ description "Build the JalviewJS site and run the launch test"
dependsOn jalviewjsBuildSite
+ dependsOn jalviewjsLaunchTest
}
git://source.jalview.org / jalview.git / blobdiff