import org.apache.tools.ant.filters.ReplaceTokens
+//import org.apache.tools.ant.filters.ReplaceRegexp
import org.gradle.internal.os.OperatingSystem
+import org.gradle.plugins.ide.eclipse.model.*
+
+
+import groovy.transform.ExternalizeMethods
buildscript {
dependencies {
- classpath 'org.openclover:clover:4.3.1'
- classpath 'org.apache.commons:commons-compress:1.18'
+ classpath 'org.openclover:clover:4.3.1'
+ classpath 'org.apache.commons:commons-compress:1.18'
}
}
plugins {
id 'java'
id 'application'
+ id 'eclipse'
id 'com.github.johnrengelman.shadow' version '4.0.3'
id 'com.install4j.gradle' version '7.0.9'
}
mainClassName = launcherClass
def cloverInstrDir = file("$buildDir/$cloverSourcesInstrDir")
def classes = "$jalviewDir/$classesDir"
+
if (clover.equals("true")) {
use_clover = true
classes = "$buildDir/$cloverClassesDir"
// configure classpath/args for j8/j11 compilation
+def jalviewDirAbsolutePath = file(jalviewDir).getAbsolutePath()
def libDir
def libDistDir
def compile_source_compatibility
def compile_target_compatibility
+
+ext {
+ // where the getdown channel will be built.
+ // TODO: consider allowing this expression to be overridden by -P arg
+ getdownWebsiteDir = jalviewDir + '/' + getdown_website_dir + '/' + JAVA_VERSION
+ getdownAppDir = getdownWebsiteDir + '/' + getdown_app_dir
+ getdownJ11libDir = getdownWebsiteDir + '/' + getdown_j11lib_dir
+ getdownResourceDir = getdownWebsiteDir + '/' + getdown_resource_dir
+ getdownLauncher = jalviewDir + '/' + getdown_launcher
+ getdownFilesDir = jalviewDir + '/' + getdown_files_dir + '/' + JAVA_VERSION + '/'
+ getdown_app_base = getdown_channel_base+"/"+getdown_channel_name+"/"+JAVA_VERSION+"/"
+ modules_compileClasspath = fileTree(dir: "$jalviewDir/$j11modDir", include: ["*.jar"])
+ modules_runtimeClasspath = modules_compileClasspath
+ gitHash = ""
+ gitBranch = ""
+}
+
+def JAVA_INTEGER_VERSION
def additional_compiler_args = []
+// these are getdown.txt properties defined dependent on the JAVA_VERSION
def getdown_alt_java_min_version
+// this property is assigned below and expanded to multiple lines in the getdown task
+def getdown_alt_multi_java_location
if (JAVA_VERSION.equals("1.8")) {
+ JAVA_INTEGER_VERSION = "8"
libDir = j11libDir
libDistDir = j8libDir
compile_source_compatibility = 1.8
compile_target_compatibility = 1.8
getdown_alt_java_min_version = getdown_alt_java8_min_version
+ getdown_alt_multi_java_location = getdown_alt_java8_txt_multi_java_location
} else if (JAVA_VERSION.equals("11")) {
+ JAVA_INTEGER_VERSION = "11"
libDir = j11libDir
libDistDir = j11libDir
compile_source_compatibility = 11
compile_target_compatibility = 11
getdown_alt_java_min_version = getdown_alt_java11_min_version
+ getdown_alt_multi_java_location = getdown_alt_java11_txt_multi_java_location
additional_compiler_args += [
- '--module-path', file("$jalviewDir/$j11modDir").getAbsolutePath(),
+ '--module-path', ext.modules_compileClasspath.asPath,
'--add-modules', j11modules
]
} else {
resources {
srcDirs "$jalviewDir/$resourceDir"
- srcDirs "$jalviewDir/$libDir"
+ srcDirs "$jalviewDir/$libDistDir"
}
jar.destinationDir = file("$jalviewDir/$packageDir")
runtimeClasspath = compileClasspath
}
-
clover {
java {
- srcDirs = [ cloverInstrDir ]
- outputDir = file("${buildDir}/${cloverClassesDir}")
+ srcDirs = [ cloverInstrDir ]
+ outputDir = file("${buildDir}/${cloverClassesDir}")
}
-
+
resources {
srcDirs = sourceSets.main.resources.srcDirs
}
compileClasspath = configurations.cloverRuntime + files( sourceSets.clover.java.outputDir )
+ compileClasspath += files(sourceSets.main.java.outputDir)
+ compileClasspath += sourceSets.main.compileClasspath
compileClasspath += fileTree(dir: "$jalviewDir/$utilsDir", include: ["**/*.jar"])
compileClasspath += fileTree(dir: "$jalviewDir/$libDir", include: ["*.jar"])
runtimeClasspath = compileClasspath
}
-
+
test {
java {
srcDirs "$jalviewDir/$testSourceDir"
srcDirs = sourceSets.main.resources.srcDirs
}
- compileClasspath = files( sourceSets.test.java.outputDir )
+ compileClasspath = files( sourceSets.test.java.outputDir )
+
if (use_clover) {
compileClasspath += sourceSets.clover.compileClasspath
} else {
- compileClasspath += sourceSets.main.compileClasspath
compileClasspath += files(sourceSets.main.java.outputDir)
}
- compileClasspath += files( sourceSets.main.resources.srcDirs)
+ //compileClasspath += sourceSets.main.compileClasspath
+ //compileClasspath += files( sourceSets.main.resources.srcDirs)
compileClasspath += fileTree(dir: "$jalviewDir/$utilsDir", include: ["**/*.jar"])
compileClasspath += fileTree(dir: "$jalviewDir/$libDir", include: ["*.jar"])
}
configurations {
- cloverRuntime
- cloverRuntime.extendsFrom cloverCompile
+ cloverRuntime
+ cloverRuntime.extendsFrom cloverCompile
}
-
+
+eclipse {
+ project {
+ name = "Jalview with gradle build"
+
+ natures 'org.eclipse.jdt.core.javanature',
+ 'org.eclipse.jdt.groovy.core.groovyNature',
+ 'org.eclipse.buildship.core.gradleprojectnature'
+
+ buildCommand 'org.eclipse.jdt.core.javabuilder'
+ buildCommand 'org.eclipse.buildship.core.gradleprojectbuilder'
+ }
+
+ classpath {
+ //defaultOutputDir = sourceSets.main.java.outputDir
+ def removeThese = []
+ configurations.each{ if (it.isCanBeResolved()) {
+ removeThese += it
+ }
+ }
+
+ minusConfigurations += removeThese
+ plusConfigurations = [ ]
+ file {
+
+ whenMerged { cp ->
+ def removeTheseToo = []
+ HashMap<String, Boolean> addedSrcPath = new HashMap<>();
+ cp.entries.each { entry ->
+ if (entry.kind == 'src') {
+ if (addedSrcPath.getAt(entry.path) || !(entry.path == "src" || entry.path == "test")) {
+ removeTheseToo += entry
+ } else {
+ addedSrcPath.putAt(entry.path, true)
+ }
+ }
+ }
+ cp.entries.removeAll(removeTheseToo)
+
+ cp.entries += new Output("bin/main")
+ cp.entries += new Library(fileReference(helpParentDir))
+ cp.entries += new Library(fileReference(resourceDir))
+
+ HashMap<String, Boolean> addedLibPath = new HashMap<>();
+ def allPaths = sourceSets.test.compileClasspath + sourceSets.main.compileClasspath
+ sourceSets.main.compileClasspath.each{
+ //if ((it.isDirectory() || ! it.exists()) && ! (it.equals(sourceSets.main.java.outputDir))) {
+ //no longer want to add outputDir as eclipse is using its own output dir in bin/main
+ if (it.isDirectory() || ! it.exists()) {
+ // don't add dirs to classpath
+ return
+ }
+ def itPath = it.toString()
+ if (itPath.startsWith(jalviewDirAbsolutePath+"/")) {
+ itPath = itPath.substring(jalviewDirAbsolutePath.length()+1)
+ }
+ if (addedLibPath.get(itPath)) {
+ //println("Not adding duplicate entry "+itPath)
+ } else {
+ //println("Adding entry "+itPath)
+ cp.entries += new Library(fileReference(itPath))
+ addedLibPath.put(itPath, true)
+ }
+ }
+
+ sourceSets.test.compileClasspath.each{
+ //if ((it.isDirectory() || ! it.exists()) && ! (it.equals(sourceSets.main.java.outputDir))) {
+ //no longer want to add outputDir as eclipse is using its own output dir in bin/main
+ if (it.isDirectory() || ! it.exists()) {
+ // don't add dirs to classpath
+ return false // groovy "break" in .each loop
+ }
+ def itPath = it.toString()
+ if (itPath.startsWith(jalviewDirAbsolutePath+"/")) {
+ itPath = itPath.substring(jalviewDirAbsolutePath.length()+1)
+ }
+ if (addedLibPath.get(itPath)) {
+ // don't duplicate
+ } else {
+ def lib = new Library(fileReference(itPath))
+ // this doesn't work... yet. Adding test=true attribute using withXml below
+ //def attrs = new Node(null, 'attributes', ["test":"true"])
+ //lib.appendNode(attrs) //
+ cp.entries += lib
+ addedLibPath.put(itPath, true)
+ }
+ }
+ }
+
+ // withXml changes ignored by buildship, these add the "test=true" attribute
+ withXml {
+ def node = it.asNode()
+
+ def srcTestAttributes
+ node.children().each{ cpe ->
+ def attributes = cpe.attributes()
+ if (attributes.get("kind") == "src" && attributes.get("path") == "test") {
+ srcTestAttributes = cpe.find { a -> a.name() == "attributes" }
+ return
+ }
+ }
+ def addTestAttribute = true
+ srcTestAttributes.each{a ->
+ if (a.name() == "attribute" && a.attributes().getAt("name") == "test") {
+ addTestAttribute = false
+ }
+ }
+ if (addTestAttribute) {
+ srcTestAttributes.append(new Node(null, "attribute", [name:"test", value:"true"]))
+ }
+
+ node.children().each{ cpe ->
+ def attributes = cpe.attributes()
+ if (attributes.get("kind") == "lib" && attributes.get("path").startsWith("utils/")) {
+ cpe.appendNode('attributes')
+ .appendNode('attribute', [name:"test", value:"true"])
+ }
+ }
+ } // withXML
+ } // file
+
+ containers 'org.eclipse.buildship.core.gradleclasspathcontainer'
+ } // classpath
+
+ jdt {
+ // for the IDE, use java 11 compatibility
+ sourceCompatibility = 11
+ targetCompatibility = 11
+ javaRuntimeName = "JavaSE-11"
+
+ file {
+ withProperties { props ->
+ def jalview_prefs = new Properties()
+ def ins = new FileInputStream(jalviewDirAbsolutePath+"/"+eclipse_extra_jdt_prefs_file)
+ jalview_prefs.load(ins)
+ ins.close()
+ jalview_prefs.forEach { t, v ->
+ if (props.getAt(t) == null) {
+ props.putAt(t, v)
+ }
+ }
+ }
+ }
+ }
+
+ //synchronizationTasks eclipseClasspath
+ //autoBuildTasks eclipseClasspath
+}
+
task cloverInstr() {
// only instrument source, we build test classes as normal
- inputs.files files (sourceSets.main.allJava) // , fileTree(dir:"$jalviewDir/$testSourceDir", include: ["**/*.java"]))
- outputs.dir cloverInstrDir
-
- doFirst {
- delete cloverInstrDir
- def argsList = ["--initstring", "${buildDir}/clover/clover.db",
- "-d", "${buildDir}/${cloverSourcesInstrDir}"]
- argsList.addAll(inputs.files.files.collect({ file ->
- file.absolutePath
- }))
- String[] args = argsList.toArray()
- println("About to instrument "+args.length +" files")
- com.atlassian.clover.CloverInstr.mainImpl(args)
- }
+ inputs.files files (sourceSets.main.allJava) // , fileTree(dir:"$jalviewDir/$testSourceDir", include: ["**/*.java"]))
+ outputs.dir cloverInstrDir
+
+ doFirst {
+ delete cloverInstrDir
+ def argsList = ["--initstring", "${buildDir}/clover/clover.db",
+ "-d", "${buildDir}/${cloverSourcesInstrDir}"]
+ argsList.addAll(inputs.files.files.collect({ file ->
+ file.absolutePath
+ }))
+ String[] args = argsList.toArray()
+ println("About to instrument "+args.length +" files")
+ com.atlassian.clover.CloverInstr.mainImpl(args)
+ }
}
+
-
task cloverReport {
- inputs.dir "${buildDir}/clover"
- outputs.dir "${reportsDir}/clover"
- onlyIf {
- file("${buildDir}/clover/clover.db").exists()
- }
- doFirst {
- def argsList = ["--initstring", "${buildDir}/clover/clover.db",
- "-o", "${reportsDir}/clover"]
- String[] args = argsList.toArray()
- com.atlassian.clover.reporters.html.HtmlReporter.runReport(args)
-
- // and generate ${reportsDir}/clover/clover.xml
- args = ["--initstring", "${buildDir}/clover/clover.db",
- "-o", "${reportsDir}/clover/clover.xml"].toArray()
- com.atlassian.clover.reporters.xml.XMLReporter.runReport(args)
- }
+ group = "Verification"
+ description = "Createst the Clover report"
+ inputs.dir "${buildDir}/clover"
+ outputs.dir "${reportsDir}/clover"
+ onlyIf {
+ file("${buildDir}/clover/clover.db").exists()
+ }
+ doFirst {
+ def argsList = ["--initstring", "${buildDir}/clover/clover.db",
+ "-o", "${reportsDir}/clover"]
+ String[] args = argsList.toArray()
+ com.atlassian.clover.reporters.html.HtmlReporter.runReport(args)
+
+ // and generate ${reportsDir}/clover/clover.xml
+ args = ["--initstring", "${buildDir}/clover/clover.db",
+ "-o", "${reportsDir}/clover/clover.xml"].toArray()
+ com.atlassian.clover.reporters.xml.XMLReporter.runReport(args)
+ }
}
// end clover bits
}
compileTestJava {
-
if (use_clover) {
dependsOn compileCloverJava
classpath += configurations.cloverRuntime
return date.format(format)
}
-def getGitHash() {
- def stdout = new ByteArrayOutputStream()
- exec {
- commandLine "git", "rev-parse", "--short", "HEAD"
- standardOutput = stdout
- workingDir = jalviewDir
+task setGitHash(type: Exec) {
+ workingDir = jalviewDir
+ commandLine "git", "rev-parse", "--short", "HEAD"
+ standardOutput = new ByteArrayOutputStream()
+ project.ext.gitHash = {
+ return standardOutput.toString().trim()
}
- return stdout.toString().trim()
}
-def getGitBranch() {
- def stdout = new ByteArrayOutputStream()
- exec {
- commandLine "git", "rev-parse", "--abbrev-ref", "HEAD"
- standardOutput = stdout
- workingDir = jalviewDir
+task setGitBranch(type: Exec) {
+ workingDir = jalviewDir
+ commandLine "git", "rev-parse", "--abbrev-ref", "HEAD"
+ standardOutput = new ByteArrayOutputStream()
+ project.ext.gitBranch = {
+ return standardOutput.toString().trim()
}
- return stdout.toString().trim()
+}
+
+task setGitVals {
+ dependsOn setGitHash
+ dependsOn setGitBranch
}
task createBuildProperties(type: WriteProperties) {
+ dependsOn setGitVals
inputs.dir("$jalviewDir/$sourceDir")
inputs.dir("$jalviewDir/$resourceDir")
outputFile "$classes/$buildPropertiesFile"
- /* taking time/date specific comment out to allow better incremental builds */
+ // taking time specific comment out to allow better incremental builds
//comment "--Jalview Build Details--\n"+getDate("yyyy-MM-dd HH:mm:ss")
comment "--Jalview Build Details--\n"+getDate("yyyy-MM-dd")
property "BUILD_DATE", getDate("dd MMMM yyyy")
property "VERSION", JALVIEW_VERSION
- property "INSTALLATION", INSTALLATION+" git-commit:"+getGitHash()+" ["+getGitBranch()+"]"
+ property "INSTALLATION", INSTALLATION+" git-commit:"+project.ext.gitHash+" ["+project.ext.gitBranch+"]"
outputs.file(outputFile)
outputs.dir("$classes")
}
+def buildingHTML = "$jalviewDir/$docDir/building.html"
+task deleteBuildingHTML(type: Delete) {
+ delete buildingHTML
+}
+
+task convertBuildingMD(type: Exec) {
+ dependsOn deleteBuildingHTML
+ def buildingMD = "$jalviewDir/$docDir/building.md"
+ def css = "$jalviewDir/$docDir/github.css"
+
+ def pandoc = pandoc_exec
+ if (! file(pandoc).exists() && hostname.equals("jv-bamboo")) {
+ pandoc = System.getProperty("user.home")+"/buildtools/pandoc/bin/pandoc"
+ }
+
+ if (file(pandoc).exists()) {
+ commandLine pandoc, '-s', '-o', buildingHTML, '--metadata', 'pagetitle="Building Jalview from Source"', '--toc', '-H', css, buildingMD
+ }
+ ignoreExitValue true
+
+ inputs.file(buildingMD)
+ inputs.file(css)
+ outputs.file(buildingHTML)
+}
+clean {
+ delete buildingHTML
+}
+
task syncDocs(type: Sync) {
+ dependsOn convertBuildingMD
def syncDir = "$classes/$docDir"
from fileTree("$jalviewDir/$docDir")
into syncDir
}
def helpFile = "$classes/$helpDir/help.jhm"
-task syncHelp(type: Sync) {
- inputs.files("$jalviewDir/$helpDir")
- outputs.files(helpFile)
-
- def syncDir = "$classes/$helpDir"
- from fileTree("$jalviewDir/$helpDir")
- into syncDir
-}
task copyHelp(type: Copy) {
- def inputDir = "$jalviewDir/$helpDir"
+ def inputDir = "$jalviewDir/$helpParentDir/$helpDir"
def outputDir = "$classes/$helpDir"
- from inputDir
+ from(inputDir) {
+ exclude '**/*.gif'
+ exclude '**/*.jpg'
+ exclude '**/*.png'
+ filter(ReplaceTokens, beginToken: '$$', endToken: '$$', tokens: ['Version-Rel': JALVIEW_VERSION])
+ }
+ from(inputDir) {
+ include '**/*.gif'
+ include '**/*.jpg'
+ include '**/*.png'
+ }
into outputDir
- filter(ReplaceTokens, beginToken: '$$', endToken: '$$', tokens: ['Version-Rel': "USING_FILTER"])
+
inputs.dir(inputDir)
outputs.files(helpFile)
outputs.dir(outputDir)
}
task syncLib(type: Sync) {
- def syncDir = "$classes/$libDir"
- from fileTree("$jalviewDir/$libDir")
+ def syncDir = "$classes/$libDistDir"
+ from fileTree("$jalviewDir/$libDistDir")
into syncDir
}
if (use_clover) {
dependsOn cloverInstr
}
- print("Running tests " + (use_clover?"WITH":"WITHOUT") + " clover [clover="+use_clover+"]\n")
-
+
+ print("Running tests " + (use_clover?"WITH":"WITHOUT") + " clover [clover="+use_clover+"]\n")
+
useTestNG() {
includeGroups testngGroups
preserveOrder true
useDefaultListeners=true
}
-
+
workingDir = jalviewDir
//systemProperties 'clover.jar' System.properties.clover.jar
sourceCompatibility = compile_source_compatibility
destinationDir = file("$jalviewDir/$utilsDir")
source = fileTree(dir: "$jalviewDir/$utilsDir", include: ["HelpLinksChecker.java", "BufferedLineReader.java"])
+ inputs.file("$jalviewDir/$utilsDir/HelpLinksChecker.java")
+ inputs.file("$jalviewDir/$utilsDir/HelpLinksChecker.java")
outputs.file("$jalviewDir/$utilsDir/HelpLinksChecker.class")
outputs.file("$jalviewDir/$utilsDir/BufferedLineReader.class")
}
+def helplinkscheckeroutputfile = file("$jalviewDir/$utilsDir/HelpLinksChecker.out")
task linkCheck(type: JavaExec) {
dependsOn prepare, compileLinkCheck
classpath = files("$jalviewDir/$utilsDir")
workingDir = jalviewDir
def help = "$classes/$helpDir"
args = [ "$classes/$helpDir", "-nointernet" ]
- //args = [ "$classesDir/$helpDir", "-nointernet" ]
doFirst {
- standardOutput new FileOutputStream("$jalviewDir/$utilsDir/HelpLinksChecker.out")
+ helplinkscheckeroutputfile.createNewFile()
+ standardOutput new FileOutputStream(helplinkscheckeroutputfile, false)
}
- outputs.file("$jalviewDir/$utilsDir/HelpLinksChecker.out")
+ outputs.file(helplinkscheckeroutputfile)
}
task cleanPackageDir(type: Delete) {
// doing a Sync instead of Copy as Copy doesn't deal with "outputs" very well
task syncJars(type: Sync) {
- from fileTree("$jalviewDir/$libDir").include("**/*.jar").include("*.jar").files
+ from fileTree("$jalviewDir/$libDistDir").include("**/*.jar").include("*.jar").files
into "$jalviewDir/$packageDir"
preserve {
include jar.archiveName
}
task makeDist {
+ group = "build"
+ description = "Put all required libraries in dist"
// order of "cleanPackageDir", "copyJars", "jar" important!
jar.mustRunAfter cleanPackageDir
syncJars.mustRunAfter cleanPackageDir
}
shadowJar {
+ group = "distribution"
dependsOn makeDist
- if (JAVA_VERSION.equals("11")) {
- from ("$jalviewDir/$j11libDir") {
- include("*.jar")
- }
+ from ("$jalviewDir/$libDistDir") {
+ include("*.jar")
}
mainClassName = shadowJarMainClass
mergeServiceFiles()
- classifier = "all"
+ classifier = "all-"+JAVA_VERSION
minimize()
}
-ext {
- getdownWebsiteDir = jalviewDir + '/' + getdown_website_dir
- getdownAppDir = getdownWebsiteDir + '/' + getdown_app_dir
- getdownJ11libDir = getdownWebsiteDir + '/' + getdown_j11lib_dir
- getdownResourceDir = getdownWebsiteDir + '/' + getdown_resource_dir
- getdownLauncher = jalviewDir + '/' + getdown_launcher
- getdownFilesDir = jalviewDir + '/' + getdown_files_dir
- getdownLib1 = jalviewDir + '/' + getdown_lib1
- def getdownChannel = getdown_channel_name
- if (getdown_channel_name.equals("COMMIT")) {
- getdownChannel = getGitHash()
- }
- getdown_app_base = getdown_channel_base+"/"+JAVA_VERSION+"/"+getdownChannel+"/"
-}
-
task getdownWebsite() {
+ group = "distribution"
+ description = "Create the getdown minimal app folder, and website folder for this version of jalview. Website folder also used for offline app installer"
dependsOn makeDist
def getdownWebsiteResourceFilenames = []
def getdownTextString = ""
// go through properties looking for getdown_txt_...
def props = project.properties.sort { it.key }
props.put("getdown_txt_java_min_version", getdown_alt_java_min_version)
+ props.put("getdown_txt_multi_java_location", getdown_alt_multi_java_location)
+
+ if (getdown_local == "true") {
+ getdown_app_base = file(getdownWebsiteDir).toURI().toString()
+ }
props.put("getdown_txt_appbase", getdown_app_base)
props.each{ prop, val ->
if (prop.startsWith("getdown_txt_") && val != null) {
}
}
- if (JAVA_VERSION.equals("11")) {
- def j11libFiles = fileTree(dir: "$jalviewDir/$j11libDir", include: ["*.jar"]).getFiles()
- j11libFiles.sort().each{f ->
- def line = "code = " + getdown_j11lib_dir + '/' + f.getName() + "\n"
- getdownTextString += line
- copy {
- from f.getPath()
- into project.ext.getdownJ11libDir
- }
- }
- }
-
- getdownTextString += "code = " + file(getdownLauncher).getName() + "\n"
+ // NOT USING MODULES YET, EVERYTHING SHOULD BE IN dist
+ /*
+ if (JAVA_VERSION.equals("11")) {
+ def j11libFiles = fileTree(dir: "$jalviewDir/$j11libDir", include: ["*.jar"]).getFiles()
+ j11libFiles.sort().each{f ->
+ def line = "code = " + getdown_j11lib_dir + '/' + f.getName() + "\n"
+ getdownTextString += line
+ copy {
+ from f.getPath()
+ into project.ext.getdownJ11libDir
+ }
+ }
+ }
+ */
+
+ // getdown-launcher.jar should not be in main application class path so the main application can move it when updated. Listed as a resource so it gets updated.
+ //getdownTextString += "class = " + file(getdownLauncher).getName() + "\n"
+ getdownTextString += "resource = " + file(getdownLauncher).getName() + "\n"
getdownTextString += "class = " + mainClass + "\n"
def getdown_txt = file(project.ext.getdownWebsiteDir + "/getdown.txt")
copy {
from getdownLauncher
- into project.ext.getdownWebsiteDir
- }
-
- copy {
- from getdownLauncher
- into project.ext.getdownFilesDir
- }
-
- copy {
- from getdownLib1
into project.ext.getdownFilesDir
}
copy {
- from getdownLib1
+ from getdownLauncher
into project.ext.getdownWebsiteDir
}
from jalviewDir + '/' + project.getProperty('getdown_txt_ui.progress_image')
from jalviewDir + '/' + project.getProperty('getdown_txt_ui.icon')
from jalviewDir + '/' + project.getProperty('getdown_txt_ui.mac_dock_icon')
- into project.ext.getdownFilesDir + '/' + getdown_resource_dir
+ into project.ext.getdownFilesDir + '/' + getdown_resource_dir
}
}
}
task getdownDigest(type: JavaExec) {
+ group = "distribution"
+ description = "Digest the getdown website folder"
dependsOn getdownWebsite
- classpath = files(jalviewDir + '/' + getdown_core)
- classpath file(jalviewDir + '/' + getdown_lib1)
+ classpath = files(jalviewDir + '/' + getdown_core, jalviewDir+'/'+getdown_launcher)
main = "com.threerings.getdown.tools.Digester"
args project.ext.getdownWebsiteDir
+ inputs.dir(project.ext.getdownWebsiteDir)
outputs.file(project.ext.getdownWebsiteDir + '/' + "digest2.txt")
}
task getdown() {
+ group = "distribution"
+ description = "Create the minimal and full getdown app folder for installers and website and create digest file"
dependsOn getdownDigest
}
}
installDir = file(install4jHomeDir)
mediaTypes = Arrays.asList(install4jMediaTypes.split(","))
+ if (install4jFaster.equals("true")) {
+ faster = true
+ }
}
def install4jConf
def macosJavaVMDir
+def macosJavaVMTgz
def windowsJavaVMDir
+def windowsJavaVMTgz
+def install4jDir = "$jalviewDir/$install4jResourceDir"
+def install4jConfFile = "jalview-installers-java"+JAVA_VERSION+".install4j"
+install4jConf = "$install4jDir/$install4jConfFile"
+
task copyInstall4jTemplate(type: Copy) {
- def install4jDir = "$jalviewDir/$install4jResourceDir"
- def install4jConfFile = "jalview-installers-java"+JAVA_VERSION+".install4j"
- macosJavaVMDir = System.env.HOME+"/buildtools/jre/openjdk-java_vm/macos-jre"+JAVA_VERSION+"/java_vm"
- windowsJavaVMDir = System.env.HOME+"/buildtools/jre/openjdk-java_vm/windows-jre"+JAVA_VERSION+"/java_vm"
+ macosJavaVMDir = System.env.HOME+"/buildtools/jre/openjdk-java_vm/getdown/macos-jre"+JAVA_VERSION+"/jre"
+ macosJavaVMTgz = System.env.HOME+"/buildtools/jre/openjdk-java_vm/install4j/tgz/macos-jre"+JAVA_VERSION+".tar.gz"
+ windowsJavaVMDir = System.env.HOME+"/buildtools/jre/openjdk-java_vm/getdown/windows-jre"+JAVA_VERSION+"/jre"
+ windowsJavaVMTgz = System.env.HOME+"/buildtools/jre/openjdk-java_vm/install4j/tgz/windows-jre"+JAVA_VERSION+".tar.gz"
from (install4jDir) {
include install4jTemplate
rename (install4jTemplate, install4jConfFile)
filter(ReplaceTokens, beginToken: '', endToken: '', tokens: ['9999999999': JAVA_VERSION])
- filter(ReplaceTokens, beginToken: '$$', endToken: '$$', tokens: ['VERSION': JALVIEW_VERSION, 'MACOS_JAVA_VM_DIR': macosJavaVMDir, 'WINDOWS_JAVA_VM_DIR': windowsJavaVMDir])
+ filter(ReplaceTokens, beginToken: '$$', endToken: '$$',
+ tokens: [
+ 'JAVA_VERSION': JAVA_VERSION,
+ 'JAVA_INTEGER_VERSION': JAVA_INTEGER_VERSION,
+ 'VERSION': JALVIEW_VERSION,
+ 'MACOS_JAVA_VM_DIR': macosJavaVMDir,
+ 'MACOS_JAVA_VM_TGZ': macosJavaVMTgz,
+ 'WINDOWS_JAVA_VM_DIR': windowsJavaVMDir,
+ 'WINDOWS_JAVA_VM_TGZ': windowsJavaVMTgz,
+ 'INSTALL4JINFOPLISTFILEASSOCIATIONS': install4jInfoPlistFileAssociations,
+ 'COPYRIGHT_MESSAGE': install4jCopyrightMessage,
+ 'MACOS_BUNDLE_ID': install4jMacOSBundleId
+ ]
+ )
+ if (OSX_KEYPASS=="") {
+ filter(ReplaceTokens, beginToken: 'codeSigning macEnabled="', endToken: '"', tokens: ['true':'codeSigning macEnabled="false"'])
+ filter(ReplaceTokens, beginToken: 'runPostProcessor="true" ',endToken: 'Processor', tokens: ['post':'runPostProcessor="false" postProcessor'])
+ }
}
into install4jDir
- install4jConf = "$install4jDir/$install4jConfFile"
- inputs.files("$install4jDir/$install4jTemplate")
outputs.files(install4jConf)
+
+ doLast {
+ // include file associations in installer
+ def installerFileAssociationsXml = file("$install4jDir/$install4jInstallerFileAssociations").text
+ ant.replaceregexp(
+ byline: false,
+ flags: "s",
+ match: '<action name="EXTENSIONS_REPLACED_BY_GRADLE".*?</action>',
+ replace: installerFileAssociationsXml,
+ file: install4jConf
+ )
+ /*
+ // include uninstaller applescript app files in dmg
+ def installerDMGUninstallerXml = file("$install4jDir/$install4jDMGUninstallerAppFiles").text
+ ant.replaceregexp(
+ byline: false,
+ flags: "s",
+ match: '<file name="UNINSTALL_OLD_JALVIEW_APP_REPLACED_IN_GRADLE" file=.*?>',
+ replace: installerDMGUninstallerXml,
+ file: install4jConf
+ )
+ */
+ }
}
task installers(type: com.install4j.gradle.Install4jTask) {
+ group = "distribution"
+ description = "Create the install4j installers"
dependsOn getdown
dependsOn copyInstall4jTemplate
- projectFile = file install4jConf
- variables = [majorVersion: version.substring(2, 11), build: 001]
- destination = "$jalviewDir/$install4jBuildDir"
+ projectFile = file(install4jConf)
+ println("Using projectFile "+projectFile)
+ variables = [majorVersion: version.substring(2, 11), build: 001, OSX_KEYSTORE: OSX_KEYSTORE, JSIGN_SH: JSIGN_SH]
+ destination = "$jalviewDir/$install4jBuildDir/$JAVA_VERSION"
buildSelected = true
+
+ if (OSX_KEYPASS) {
+ macKeystorePassword=OSX_KEYPASS
+
+ }
+
inputs.dir(project.ext.getdownWebsiteDir)
inputs.file(install4jConf)
inputs.dir(macosJavaVMDir)
inputs.dir(windowsJavaVMDir)
- outputs.dir("$jalviewDir/$install4jBuildDir")
+ outputs.dir("$jalviewDir/$install4jBuildDir/$JAVA_VERSION")
}
clean {
git://source.jalview.org / jalview.git / blobdiff