// local build environment properties
def localProps = "${jalviewDir}/local.properties"
if (file(localProps).exists()) {
- def p = new Properties()
- def localPropsFIS = new FileInputStream(localProps)
- p.load(localPropsFIS)
- localPropsFIS.close()
- p.each {
- key, val ->
- def over = getProperty(key) != null
- setProperty(key, val)
- if (over) {
- println("Overriding property '${key}' with local.properties value '${val}'")
- }
+ try {
+ def p = new Properties()
+ def localPropsFIS = new FileInputStream(localProps)
+ p.load(localPropsFIS)
+ localPropsFIS.close()
+ p.each {
+ key, val ->
+ def over = getProperty(key) != null
+ setProperty(key, val)
+ if (over) {
+ println("Overriding property '${key}' with local.properties value '${val}'")
+ }
+ }
+ } catch (Exception e) {
+ System.out.println("Exception reading local.properties")
}
}
def outputDir = "${classes}/${helpDir}"
from(inputDir) {
exclude '**/*.gif'
- exclude '**/*.jpg'
- exclude '**/*.png'
- filter(ReplaceTokens, beginToken: '$$', endToken: '$$', tokens: ['Version-Rel': JALVIEW_VERSION,'Year-Rel': getDate("yyyy")])
+ exclude '**/*.jpg'
+ exclude '**/*.png'
+ filter(ReplaceTokens, beginToken: '$$', endToken: '$$', tokens: ['Version-Rel': JALVIEW_VERSION,'Year-Rel': getDate("yyyy")])
}
from(inputDir) {
include '**/*.gif'
outputs.file("${jalviewDir}/${utilsDir}/BufferedLineReader.class")
}
-def helplinkscheckertouchfile = file("${jalviewDir}/${utilsDir}/HelpLinksChecker.touch")
task linkCheck(type: JavaExec) {
dependsOn prepare, compileLinkCheck
+
+ def helpLinksCheckerOutFile = file("${jalviewDir}/${utilsDir}/HelpLinksChecker.out")
classpath = files("${jalviewDir}/${utilsDir}")
main = "HelpLinksChecker"
workingDir = jalviewDir
def help = "${classes}/${helpDir}"
args = [ "${classes}/${helpDir}", "-nointernet" ]
- doLast {
- helplinkscheckertouchfile.createNewFile()
- }
+ def outFOS = new FileOutputStream(helpLinksCheckerOutFile, false) // false == don't append
+ def errFOS = outFOS
+ standardOutput = new org.apache.tools.ant.util.TeeOutputStream(
+ outFOS,
+ standardOutput)
+ errorOutput = new org.apache.tools.ant.util.TeeOutputStream(
+ outFOS,
+ errorOutput)
inputs.dir("${classes}/${helpDir}")
- outputs.file(helplinkscheckertouchfile)
+ outputs.file(helpLinksCheckerOutFile)
}
// import the pubhtmlhelp target
task jalviewjsSitePath {
def relativeBuildDir = file(jalviewDirAbsolutePath).toPath().relativize(buildDir.toPath())
jalviewjsBuildDir = "${relativeBuildDir}/jalviewjs"
- if (jalviewjs_site_dir.startsWith('/')) {
- jalviewjsSiteDir = jalviewjs_site_dir
- } else {
- jalviewjsSiteDir = "${jalviewjsBuildDir}/${jalviewjs_site_dir}"
- }
+ jalviewjsSiteDir = "${jalviewjsBuildDir}/${jalviewjs_site_dir}"
jalviewjsTransferSiteDir = "${jalviewjsBuildDir}/tmp/site"
}
propVal = System.getProperty("user.home") + propVal.substring(1)
}
}
- def propsFileName = "${jalviewjsBuildDir}/${jalviewjs_eclipse_workspace_location_file}"
+ def propsFileName = "${jalviewDirAbsolutePath}/${jalviewjsBuildDir}/${jalviewjs_eclipse_workspace_location_file}"
+ def propsFile = file(propsFileName)
def eclipseWsDir = propVal
def props = new Properties()
- if (( eclipseWsDir == null || !file(eclipseWsDir).exists() ) && file(propsFileName).exists()) {
- def ins = new FileInputStream("${jalviewDirAbsolutePath}/${propsFileName}")
+ if (( eclipseWsDir == null || !file(eclipseWsDir).exists() ) && propsFile.exists()) {
+ def ins = new FileInputStream(propsFileName)
props.load(ins)
ins.close()
if (props.getProperty(propKey, null) != null) {
}
}
+ def writeProps = false
if (eclipseWsDir == null || !file(eclipseWsDir).exists()) {
def tempDir = File.createTempDir()
eclipseWsDir = tempDir.getAbsolutePath()
- props.setProperty(propKey, eclipseWsDir)
- def propsFile = file(propsFileName)
- propsFile.parentFile.mkdirs()
- propsFile.createNewFile() // doesn't affect existing file
- def outs = new FileOutputStream(propsFile, false)
- props.store(outs, null)
- outs.close()
+ writeProps = true
}
-
eclipseWorkspace = file(eclipseWsDir)
doFirst {
+ if (writeProps) {
+ props.setProperty(propKey, eclipseWsDir)
+ propsFile.parentFile.mkdirs()
+ def bytes = new ByteArrayOutputStream()
+ props.store(bytes, null)
+ def propertiesString = bytes.toString()
+ propsFile.text = propertiesString
+ }
+
println("ECLIPSE WORKSPACE: "+eclipseWorkspace.getPath())
}
+
inputs.property(propKey, eclipseWsDir)
outputs.file(propsFileName)
}
-def eclipseDropinsDir
-def utilsDropinsDir
def eclipseBinary
def eclipseVersion
def eclipseDebug = false
}
if (OperatingSystem.current().isMacOsX()) {
eclipseRoot += "/Eclipse.app"
- eclipseDropinsDir = "${eclipseRoot}/Contents/Eclipse/dropins"
eclipseBinary = "${eclipseRoot}/Contents/MacOS/eclipse"
eclipseProduct = "${eclipseRoot}/Contents/Eclipse/.eclipseproduct"
} else if (OperatingSystem.current().isWindows()) { // check these paths!!
if (file("${eclipseRoot}/eclipse").isDirectory() && file("${eclipseRoot}/eclipse/.eclipseproduct").exists()) {
eclipseRoot += "/eclipse"
}
- eclipseDropinsDir = "${eclipseRoot}/dropins"
eclipseBinary = "${eclipseRoot}/eclipse"
eclipseProduct = "${eclipseRoot}/.eclipseproduct"
} else { // linux or unix
if (file("${eclipseRoot}/eclipse").isDirectory() && file("${eclipseRoot}/eclipse/.eclipseproduct").exists()) {
eclipseRoot += "/eclipse"
}
- eclipseDropinsDir = "${eclipseRoot}/dropins"
eclipseBinary = "${eclipseRoot}/eclipse"
eclipseProduct = "${eclipseRoot}/.eclipseproduct"
}
} else {
eclipseVersionSuffix = "_4.13"
}
- utilsDropinsDir = "${jalviewDir}/${jalviewjs_eclipse_dropins_dir}${eclipseVersionSuffix}"
*/
- utilsDropinsDir = "${jalviewDir}/${jalviewjs_eclipse_dropins_dir}"
+
def propKey = "eclipse_debug"
eclipseDebug = (project.hasProperty(propKey) && project.getProperty(propKey).equals("true"))
doFirst {
if (!assumedVersion) {
- println("ECLIPSE_VERSION=${eclipseVersion}")
+ println("ECLIPSE VERSION=${eclipseVersion}")
}
}
}
task OLDjalviewjsEclipseCopyDropins {
dependsOn jalviewjsEclipsePaths
dependsOn jalviewjsCleanEclipse
- def inputFiles = fileTree(dir: utilsDropinsDir, include: "*.jar")
+ def inputFiles = fileTree(dir: "${jalviewDir}/${jalviewjs_eclipse_dropins_dir}", include: "*.jar")
inputFiles += file(jalviewjs_j2s_plugin)
- def outputDir = eclipseDropinsDir
+ def outputDir = "${buildDir}/jalviewjs
inputs.files inputFiles
inputFiles.each { file ->
task jalviewjsEclipseCopyDropins(type: Copy) {
dependsOn jalviewjsEclipsePaths
- from utilsDropinsDir
- into eclipseDropinsDir
+ def inputFiles = fileTree(dir: "${jalviewDir}/${jalviewjs_eclipse_dropins_dir}", include: "*.jar")
+ inputFiles += file("${jalviewDir}/${jalviewjs_j2s_plugin}")
+ def outputDir = "${jalviewDir}/${jalviewjsBuildDir}/${jalviewjs_eclipse_tmp_dropins_dir}"
- doLast {
- copy {
- from jalviewjs_j2s_plugin
- into eclipseDropinsDir
- }
- }
+ from inputFiles
+ into outputDir
}
// this eclipse -clean doesn't actually work
"""
def inputByteStream = new ByteArrayInputStream(inputString.getBytes())
standardInput = inputByteStream
-
- doFirst {
- println("CLEAN ECLIPSE_DEBUG=${eclipseDebug}")
- }
}
/* not really working yet
jalviewjsEclipseCopyDropins.finalizedBy jalviewjsCleanEclipse
}
task jalviewjsCreateJ2sSettings(type: WriteProperties) {
+ group "JalviewJS"
+ description "Create the .j2s file from the j2s.* properties"
+
dependsOn jalviewjsSitePath
+
outputFile ("${jalviewDir}/${jalviewjs_j2s_settings}")
def j2s_props = project.properties.findAll { it.key.startsWith("j2s.") }.sort { it.key }
def siteDirProperty = "j2s.site.directory"
if (val != null) {
if (prop == siteDirProperty) {
if (!(val.startsWith('/') || val.startsWith("file://") )) {
- val = "${jalviewjsTransferSiteDir}/${val}"
+ val = "${jalviewDir}/${jalviewjsTransferSiteDir}/${val}"
}
setSiteDir = true
}
property(prop,val)
}
if (!setSiteDir) { // default site location, don't override specifically set property
- property(siteDirProperty,jalviewjsTransferSiteDir)
+ property(siteDirProperty,"${jalviewDir}/${jalviewjsTransferSiteDir}")
}
}
inputs.properties(j2s_props)
if (eclipseDebug) {
args += "-debug"
}
- // can we use args += ["--launcher.appendVmargs", "-vmargs", "-Dorg.eclipse.equinox.p2.reconciler.dropins.directory=utils/jalviewjs/eclipse/dropins"] here? (instead of copying plugins to eclipse dropins dir)
-
- doFirst {
- println("IMPORT ECLIPSE_DEBUG=${eclipseDebug}")
- }
+ args += [ "--launcher.appendVmargs", "-vmargs", "-Dorg.eclipse.equinox.p2.reconciler.dropins.directory=${jalviewDirAbsolutePath}/${jalviewjsBuildDir}/${jalviewjs_eclipse_tmp_dropins_dir}" ]
inputs.file("${jalviewDir}/.project")
- outputs.dir(projdir)
outputs.upToDateWhen { file(projdir).exists() }
}
if (eclipseDebug) {
args += "-debug"
}
- // can we use args += ["--launcher.appendVmargs", "-vmargs", "-Dorg.eclipse.equinox.p2.reconciler.dropins.directory=swingjs"] here? (instead of copying plugins to eclipse dropins dir)
+ args += [ "--launcher.appendVmargs", "-vmargs", "-Dorg.eclipse.equinox.p2.reconciler.dropins.directory=${jalviewDirAbsolutePath}/${jalviewjsBuildDir}/${jalviewjs_eclipse_tmp_dropins_dir}" ]
def stdout
def stderr
- stdout = new ByteArrayOutputStream()
- stderr = new ByteArrayOutputStream()
+ doFirst {
+ stdout = new ByteArrayOutputStream()
+ stderr = new ByteArrayOutputStream()
- def logOutFileName = "${jalviewDirAbsolutePath}/${jalviewjsBuildDir}/${jalviewjs_j2s_stdout}"
- def logOutFile = file(logOutFileName)
- logOutFile.createNewFile()
- logOutFile.text = """ROOT: ${jalviewjs_eclipse_root}
+ def logOutFileName = "${jalviewDirAbsolutePath}/${jalviewjsBuildDir}/${jalviewjs_j2s_stdout}"
+ def logOutFile = file(logOutFileName)
+ logOutFile.createNewFile()
+ logOutFile.text = """ROOT: ${jalviewjs_eclipse_root}
BINARY: ${eclipseBinary}
VERSION: ${eclipseVersion}
WORKSPACE: ${eclipseWorkspace}
DEBUG: ${eclipseDebug}
----
"""
- def logOutFOS = new FileOutputStream(logOutFile, true) // true == append
- //def logErrFileName = "${jalviewjsBuildDir}/${jalviewjs_j2s_stderr}"
- //def logErrFile = file(logFileName)
- //logErrFile.createNewFile()
- //def logErrFOS = new FileErrputStream(logErrFile, false)
- // combine stdout and stderr
- def logErrFOS = logOutFOS
-
- if (jalviewjs_j2s_to_console.equals("true")) {
- standardOutput = new org.apache.tools.ant.util.TeeOutputStream(
- new org.apache.tools.ant.util.TeeOutputStream(
- logOutFOS,
- stdout),
- standardOutput)
+ def logOutFOS = new FileOutputStream(logOutFile, true) // true == append
+ //def logErrFileName = "${jalviewDir}/${jalviewjsBuildDir}/${jalviewjs_j2s_stderr}"
+ //def logErrFile = file(logFileName)
+ //logErrFile.createNewFile()
+ //def logErrFOS = new FileErrputStream(logErrFile, false)
+ // combine stdout and stderr
+ def logErrFOS = logOutFOS
+
+ if (jalviewjs_j2s_to_console.equals("true")) {
+ standardOutput = new org.apache.tools.ant.util.TeeOutputStream(
+ new org.apache.tools.ant.util.TeeOutputStream(
+ logOutFOS,
+ stdout),
+ standardOutput)
errorOutput = new org.apache.tools.ant.util.TeeOutputStream(
new org.apache.tools.ant.util.TeeOutputStream(
logErrFOS,
stderr),
errorOutput)
- } else {
- standardOutput = new org.apache.tools.ant.util.TeeOutputStream(
- logOutFOS,
- stdout)
+ } else {
+ standardOutput = new org.apache.tools.ant.util.TeeOutputStream(
+ logOutFOS,
+ stdout)
errorOutput = new org.apache.tools.ant.util.TeeOutputStream(
logErrFOS,
stderr)
+ }
}
doLast {
if (stdout.toString().contains("Error processing ")) {
// j2s did not complete transpile
- throw new GradleException("Error during transpilation:\n${stderr}\nSee eclipse transpile log file '${jalviewjsBuildDir}/${jalviewjs_j2s_stdout}'")
+ throw new GradleException("Error during transpilation:\n${stderr}\nSee eclipse transpile log file '${jalviewDir}/${jalviewjsBuildDir}/${jalviewjs_j2s_stdout}'")
}
}
- doFirst {
- println("TRANSPILE ECLIPSE_DEBUG=${eclipseDebug}")
- }
-
inputs.dir("${jalviewDir}/${sourceDir}")
- outputs.dir("${jalviewDir}/${eclipse_bin_dir}/main")
outputs.dir("${jalviewDir}/${jalviewjsTransferSiteDir}")
- outputs.upToDateWhen { file("${jalviewDir}/${jalviewjsTransferSiteDir}${jalviewjs_server_resource}").exists() }
-
+ outputs.upToDateWhen( { file("${jalviewDir}/${jalviewjsTransferSiteDir}${jalviewjs_server_resource}").exists() } )
}
task jalviewjsCopyTransferSite(type: Copy) {
task cleanJalviewjsSite {
doFirst {
- delete jalviewjsTransferSiteDir
- delete jalviewjsSiteDir
+ delete "${jalviewDir}/${jalviewjsTransferSiteDir}"
+ delete "${jalviewDir}/${jalviewjsSiteDir}"
}
}
compression Compression.GZIP
- from jalviewjsSiteDir
+ from "${jalviewDir}/${jalviewjsSiteDir}"
into jalviewjs_site_dir // this is inside the tar file
- inputs.dir(jalviewjsSiteDir)
+ inputs.dir("${jalviewDir}/${jalviewjsSiteDir}")
}
task jalviewjsServer {
dependsOn jalviewjsEclipsePaths
doFirst {
- delete jalviewjsBuildDir
+ delete "${jalviewDir}/${jalviewjsBuildDir}"
delete "${jalviewDir}/${eclipse_bin_dir}"
if (eclipseWorkspace != null && file(eclipseWorkspace.getAbsolutePath()+"/.metadata").exists()) {
delete file(eclipseWorkspace.getAbsolutePath()+"/.metadata")
}
delete "${jalviewDir}/${jalviewjs_j2s_settings}"
}
+
+ outputs.upToDateWhen( { false } )
}
task jalviewjs {
task jalviewjsIDECopyTransferSite(type: Copy) {
- from jalviewjsTransferSiteDir
- into jalviewjsSiteDir
+ from "${jalviewDir}/${jalviewjsTransferSiteDir}"
+ into "${jalviewDir}/${jalviewjsSiteDir}"
}
task jalviewjsIDEj2s {
git://source.jalview.org / jalview.git / blobdiff