<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
+<!--
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
+ * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+-->
<html><!-- InstanceBegin template="/Templates/jtemplate.dwt" codeOutsideHTMLIsLocked="false" -->
<head>
-<!-- InstanceBeginEditable name="doctitle" -->\r
-<TITLE>Applet Parameters</TITLE>\r
+<!-- InstanceBeginEditable name="doctitle" -->
+<TITLE>Applet Parameters</TITLE>
<!-- InstanceEndEditable -->
<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1"><meta http-equiv="keywords" content="jalview,multiple,sequence,alignment,editor,viewer,java,download,barton group,protein,dna,das,distributed annotation system">
<!-- InstanceBeginEditable name="head" --><!-- InstanceEndEditable -->
<img src="../bbsrc-new.gif" width="179" height="64" border="1"></a>
</div>
</td>
- <td valign="top" width="587" bgcolor="#F2F2FF"><!-- InstanceBeginEditable name="Contents" --> \r
+ <td valign="top" width="587" bgcolor="#F2F2FF"><!-- InstanceBeginEditable name="Contents" -->
<p>
<strong>Quick Links:<ul><li>Download the applet jar file from <a
href="jalviewApplet.jar">here</a>
</font></li>
<li> Use Jalview for input to a HTML form. For an example of how to
code this using Javascript, click <a href="formComplete.html">here</a>.
- <br>\r
- </li>\r
+ <br>
+ </li>
<li>Embed Jalview into the web page, without the "Start Jalview"
button by setting the embed parameter to true;<br>
<param name="embedded"
<font size="2"><param name="PDBFile3" value="Third.pdb
D=SeqX B=SeqY C=SeqZ"> </font> <br>
</li>
- <li>Note parameter "PDBSeq" is no longer required.<br>\r
+ <li>Note parameter "PDBSeq" is no longer required.<br>
</li>
<li>Jalview 2.3 was updated to work with Jmol 11. See the <a href="../versions.html">versions archive if you want to download the old Jmol applet</a>.</li>
<p> </p>