Merge branch 'releases/Release_2_11_3_Branch'

[jalview.git] / examples / groovy / ComputePeptideVariants.groovy

diff --git a/examples/groovy/ComputePeptideVariants.groovy b/examples/groovy/ComputePeptideVariants.groovy
index 6caa69c..e5ece51 100644 (file)
--- a/examples/groovy/ComputePeptideVariants.groovy
+++ b/examples/groovy/ComputePeptideVariants.groovy
@@ -1,6 +1,6 @@
 import jalview.datamodel.SequenceFeature
 import jalview.gui.Desktop
-def af = jalview.bin.Jalview.currentAlignFrame
+def af = Jalview.getCurrentAlignFrame()
 def av = af.viewport
 def fr = Desktop.getAlignFrameFor(av.codingComplement).getFeatureRenderer()
 def counts = 0
@@ -29,4 +29,4 @@ for (seq in av.alignment.sequences)
 }
 af.getFeatureRenderer().featuresAdded()
 af.alignPanel.paintAlignment(true, true)
-println "Added " + countm + " missense and " + counts + " synonymous variants"
\ No newline at end of file
+println "Added " + countm + " missense and " + counts + " synonymous variants"