Merge branch 'releases/Release_2_11_3_Branch'

[jalview.git] / examples / groovy / parseproperties.groovy

diff --git a/examples/groovy/parseproperties.groovy b/examples/groovy/parseproperties.groovy
index c011698..ceec6d2 100644 (file)
--- a/examples/groovy/parseproperties.groovy
+++ b/examples/groovy/parseproperties.groovy
@@ -1,12 +1,31 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE.  See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 import jalview.analysis.*;
 import jalview.datamodel.*;
 import jalview.gui.AlignFrame;
 import jalview.gui.AlignViewport;
 
-def af = Jalview.getAlignFrames();
-def al = af[0].viewport.alignment;
+def al = Jalview.getCurrentAlignFrame().viewport.alignment;
 ParseProperties pp = new ParseProperties(al);
-pp.getScoresFromDescription("Score", "ScanPS Raw Score", "([-0-9.+]+)");
+pp.getScoresFromDescription("Score", "ScanPS Raw Score", "([-0-9.+]+)", true);
 def sqs = al.getSequenceAt(0);
 def annots = sqs.getAnnotation();