JAL-3210 Barebones gradle/buildship/eclipse. See README

[jalview.git] / examples / groovy / removeFeaturesByGroup.groovy

diff --git a/examples/groovy/removeFeaturesByGroup.groovy b/examples/groovy/removeFeaturesByGroup.groovy
deleted file mode 100644 (file)
index 341e06f..0000000
--- a/examples/groovy/removeFeaturesByGroup.groovy
+++ /dev/null
@@ -1,51 +0,0 @@
-/*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
- * 
- * This file is part of Jalview.
- * 
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3
- * of the License, or (at your option) any later version.
- *  
- * Jalview is distributed in the hope that it will be useful, but 
- * WITHOUT ANY WARRANTY; without even the implied warranty 
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
- * PURPOSE.  See the GNU General Public License for more details.
- * 
- * You should have received a copy of the GNU General Public License
- * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
- * The Jalview Authors are detailed in the 'AUTHORS' file.
- */
-import jalview.analysis.*;
-import jalview.datamodel.*;
-import jalview.gui.AlignFrame;
-import jalview.gui.AlignViewport;
-
-def af = Jalview.getAlignFrames();
-
-def todie = "PDBFile"; // about to delete this type of group
-for (ala in af)
-{
-       def al = ala.viewport.alignment.getDataset();
-       if (al!=null)
-       {
-               SequenceI[] seqs = al.getSequencesArray();
-               for (sq in seqs)
-               {
-                       if (sq!=null) {
-                               SequenceFeature[] sf = sq.getSequenceFeatures();
-                               for (sfpos in sf)
-                               {
-                                   if (sfpos!=null && sfpos.getFeatureGroup().equals(todie))
-                                       {
-                                               sq.deleteFeature(sfpos);
-                                       }
-                               }
-                       }
-               }
-       }
-}
-       
-