JAL-4305 Isolate and unify the Jalview object from all the gubbins in jalview.bin...

[jalview.git] / examples / groovy / stripUniprotPrefixes.groovy

diff --git a/examples/groovy/stripUniprotPrefixes.groovy b/examples/groovy/stripUniprotPrefixes.groovy
index e324e18..2792604 100644 (file)
--- a/examples/groovy/stripUniprotPrefixes.groovy
+++ b/examples/groovy/stripUniprotPrefixes.groovy
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -29,7 +29,7 @@ def af = Jalview.getAlignFrames();
 
 for (ala in af)
 {
-       def al = ala.viewport.alignment;
+       def al = ala.getViewport().getAlignment();
        if (al!=null)
        {
                SequenceI[] seqs = al.getSequencesArray();
@@ -48,4 +48,4 @@ for (ala in af)
                }
        }
 }
-       
\ No newline at end of file
+