Merge branch 'releases/Release_2_11_3_Branch'

[jalview.git] / examples / groovy / stripUniprotPrefixes.groovy

diff --git a/examples/groovy/stripUniprotPrefixes.groovy b/examples/groovy/stripUniprotPrefixes.groovy
index b190e4d..5a01da4 100644 (file)
--- a/examples/groovy/stripUniprotPrefixes.groovy
+++ b/examples/groovy/stripUniprotPrefixes.groovy
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -29,7 +29,7 @@ def af = Jalview.getAlignFrames();
 
 for (ala in af)
 {
-       def al = ala.viewport.alignment;
+       def al = ala.getViewport().getAlignment();
        if (al!=null)
        {
                SequenceI[] seqs = al.getSequencesArray();
@@ -47,5 +47,6 @@ for (ala in af)
                        }
                }
        }
+       ala.repaint();
 }
-       
\ No newline at end of file
+