JAL-629 Tests for FileUtils. Tidying counter substitutions. Fixing PAE opening.

[jalview.git] / examples / test_fab41.result / argfile.txt

diff --git a/examples/test_fab41.result/argfile.txt b/examples/test_fab41.result/argfile.txt
index ed450dd..a3540cf 100644 (file)
--- a/examples/test_fab41.result/argfile.txt
+++ b/examples/test_fab41.result/argfile.txt
@@ -1,14 +1,16 @@
+--nonews
+--nosplash
 --substitutions
 --open={argfiledirname}/sample.a2m
 --colour=gecos:flower
---structure={argfiledirname}/test_fab41_unrelaxed_rank_1_model_3.pdb
---paematrix=[label=pAE R1-M3]{argfiledirname}/test_fab41_unrelaxed_rank_1_model_3_scores.json
---structure={argfiledirname}/test_fab41_unrelaxed_rank_2_model_4.pdb
---paematrix=[label=pAE R2-M4]{argfiledirname}/test_fab41_unrelaxed_rank_2_model_4_scores.json
---structure={argfiledirname}/test_fab41_unrelaxed_rank_3_model_2.pdb
---paematrix=[label=pAE R3-M2]{argfiledirname}/test_fab41_unrelaxed_rank_3_model_2_scores.json
---structure={argfiledirname}/test_fab41_unrelaxed_rank_4_model_5.pdb
---paematrix=[label=pAE R4-M5]{argfiledirname}/test_fab41_unrelaxed_rank_4_model_5_scores.json
---structure={argfiledirname}/test_fab41_unrelaxed_rank_5_model_1.pdb
---paematrix=[label=pAE R5-M1]{argfiledirname}/test_fab41_unrelaxed_rank_5_model_1_scores.json
+--structure={dirname}/test_fab41_unrelaxed_rank_1_model_3.pdb
+--paematrix="[label=PAE R1-M3]{dirname}/test_fab41_unrelaxed_rank_1_model_3_scores.json"
+--structure={dirname}/test_fab41_unrelaxed_rank_2_model_4.pdb
+--paematrix="[label=PAE R2-M4]{dirname}/test_fab41_unrelaxed_rank_2_model_4_scores.json"
+--structure={dirname}/test_fab41_unrelaxed_rank_3_model_2.pdb
+--paematrix="[label=PAE R3-M2]{dirname}/test_fab41_unrelaxed_rank_3_model_2_scores.json"
+--structure={dirname}/test_fab41_unrelaxed_rank_4_model_5.pdb
+--paematrix="[label=PAE R4-M5]{dirname}/test_fab41_unrelaxed_rank_4_model_5_scores.json"
+--structure={dirname}/test_fab41_unrelaxed_rank_5_model_1.pdb
+--paematrix="[label=PAE R5-M1]{dirname}/test_fab41_unrelaxed_rank_5_model_1_scores.json"
 --image={dirname}/{basename}.html