JAL-629 nf-core sample alignment files and a2m versions

[jalview.git] / examples / test_fab41.result / sample.a3m

diff --git a/examples/test_fab41.result/sample.a3m b/examples/test_fab41.result/sample.a3m
index 6408d6f..1e3e2cd 100644 (file)
--- a/examples/test_fab41.result/sample.a3m
+++ b/examples/test_fab41.result/sample.a3m
@@ -1,50 +1,32 @@
->101/1-59
+>101
 PIAQIHILEGRSDEQKETLIREVSEAISRSLDAPLTSVRVIITEMAKGHFGIGGELASK
->A0A7C4BER2    87      0.406   6.001E-18       0       58      59      1       59      65/1-59
-PVVTIEMWEGRTPEQKKALVEAVTSAVAGAIGCPPEAVEVIIHEVPKVNWGIGGQIASE
->A0A1M5AEK1    85      0.338   2.938E-17       0       58      59      1       59      68/1-59
-PIYHIEMMEGRTPEQKRKLVEAVTRVSVDILGGSPEAVHVLIHEIPRDNWATGGQLWSE
->A0A429EDM9    84      0.355   7.621E-17       0       58      59      1       59      61/1-59
-PMINVSMFPGRTAEQKQALVREVTDAFVRTCGGNPEGVWVTINEIPAEHWASGGTLFSE
->A0A7C3TX99    84      0.372   7.621E-17       0       58      59      1       59      62/1-59
-PVVTVEMWEGRTDEQKRKLAELVTNAVCEAIGCPREAVEVIMREVPRKNWAIGGKLASE
->A0A4P6L4R2    83      0.322   1.977E-16       0       58      59      1       59      61/1-59
-PTINVQLFEGRTPEQKRAFVQAVTQATVETLGSSPESVDIILHEVKREHWATGGKLWSE
->UPI0003671E29 83      0.362   1.977E-16       0       57      59      1       58      61/1-58
-PLINVTMFPGRTEEQKRELVRELTDAFARTCDANPDGVWVTINEVPPERWAVGGRLIS-
->A0A847M6U1    83      0.379   1.977E-16       0       57      59      1       58      63/1-58
-PFVTVKMWEGRTTEQKAAIIEKVTEALIESMGVEPEHVSVVLQEYPKENWGVGGQLAS-
->A0A7C3BUL5    82      0.322   2.716E-16       0       58      59      1       59      60/1-59
-PLVTVEMWEGRTVEQKKELAQGITSVMTDKLGIPPEAVTIIIKDVPKHNWAIGGKLSSE
->A0A1F9XKG5    82      0.372   3.733E-16       0       58      59      1       59      65/1-59
-PVIKIEMWKGRTHEQKKKLVEKVTSATVESIGCPPEAVQIIINEVDKENWGLAGQLASE
->A0A0F0E1Y4    81      0.338   5.129E-16       0       58      59      1       59      61/1-59
-PILRLEMHPGRTPEQKRDFVREVTQVAVEVLKCPPESVDVVIYEVPREQWAKAGKLVSE
->UPI0011096F0C 81      0.355   5.129E-16       0       58      59      1       59      63/1-59
-PTYHVEMFEGRSPEQKKQLVEEVTRVTAETLGCSPEAVDIIITEVKRENWSTGGKLWSE
->A0A4Q3J2V2    81      0.389   5.129E-16       0       58      59      1       59      64/1-59
-PTIHVQMFEGRSAEQKRDFVREVTEAACRTLGCKPDSVDIIIQDVSRANWASGGKLWSE
->UPI00168717C6 81      0.310   5.129E-16       0       57      59      1       58      64/1-58
-PFVVVHMWDGRSVEQKRELAKAITDAMVEHAGARPDALHVAIQEYPKENWARAGVLGS-
->UPI00197BDC4A 81      0.392   7.048E-16       2       57      59      1       56      66/1-56
---IHVEMYPGRTPEQKADLVREVTDAFVRTCGGNPDGVWVVIQEVPGEHWGVGGQLAS-
->UPI00069C494D 81      0.305   7.048E-16       0       58      59      1       59      83/1-59
-PVVIIEMYPGRTPEQKRALVKAVTEAMVEHAGARPDHLHVILHEVAPENWALAGRLGTE
->A0A8J3FTW4    81      0.338   9.684E-16       0       58      59      1       59      64/1-58
-PLIRVSMFPGRTEEQKRELVAETEAFLRTCGGKREGVWVVIDEVPREHWAVGGRLSSE
->UPI00124B17A4 80      0.327   1.829E-15       0       57      59      1       58      61/1-57
-PTINVQMFAGRSAEQKRAFVKATDATCESLGCKPEGVDVIIQEVKREDWATGGKLWS-
->A0A662P0H6    80      0.440   1.829E-15       0       58      59      1       59      61/1-58
-PIVEIKMWAGRTEEQKERLVKETEAVTRALGVEPEETQVIIIEIPKSNWGVSGRLASK
->UPI0015FCCAFB 80      0.310   1.829E-15       0       57      59      1       58      61/1-57
-PHITVQHLAGRSTEQKRELARETDAYVRVTGIKPESVWVTFQDVPAEDWAVGGTPIA-
->A0A2S1XR35    80      0.293   1.829E-15       0       57      59      1       58      62/1-57
-PLINVQLFEGRTPEQKRAYAKATDASVEVLGCSPEAVDVIFHDVKKSDWASGGKLWS-
->A0A327JYV8    80      0.288   1.829E-15       0       58      59      1       59      63/1-58
-PVVTVEMWTGRSREQKRALVRATDAMVTHAGAKPDNLHVIIHEVPKEDWALAGVMGDE
->A0A7V8JTY1    79      0.379   2.513E-15       0       57      59      1       58      60/1-57
-PTFNIQLFEGRSLEQRRELVKATEVTCKTLQCPPESVDIIIQEVKKENWATGGKLWS-
->A0A7C6ZGD0    79      0.327   2.513E-15       0       57      59      1       58      61/1-57
-PIVRVEMWEGRTVEQKRELAKATEDMVKIAGAKPEAVVVIFEDVPKHNWATGGVLWS-
->UPI0005AB22ED 79      0.362   2.513E-15       0       57      59      1       58      61/1-57
-PLIQVKQLAGRSEEQKRAIARETDAFVRATGVRPEAVWVTIDELPPENWAIGGTLVA-
+>UPI000695F0FD 38      0.235   1.216E+00       0       57      59      69      136     151
+PHyeVSVTMPTGWlNTVRKQGMIDAVTRALLEAIATPFDEssrfrVRCLIPEIPDGNWGSGGyaLPLS-
+>SRR5512138_1377460    56      0.275   5.500E-07       0       58      59      66      134     140
+PHVAVKLYPGRTEQQKEQLARAIADDVMRILGSSEASVSVSIEEVDAADWAEkvyrplivegGGTLYKK
+>SRR5579871_5171350    56      0.260   5.500E-07       0       58      59      99      167     172
+PHVIVKLWPGRSEPQKQKLVESVTKAVTTSLGYSDEAVSVSLQEVPSDQWtekvyrpdilGTAGRLYKK
+>MGYP000923236236      52      0.227   1.338E-05       0       58      59      1       79      191
+PIVRITMFEGRTKEQKQELARVITEAVVNIAKTTPDATEVkdqILQKVllvrslrlPPppasrrqvsGAWSADGKPTSE
+>4468|scaffold_1473490_c1_1|-89|00     51      0.202   2.534E-05       0       58      59      41      109     115
+PHVIVKLWPGKSEREETQLAEAITKSVTETLNFGPESVSVAFEEIPAKDWAskvyhadiIGneGKLYKK
+>SRR6185503_13177952   48      0.250   4.494E-04       0       58      59      12      79      182
+PLVRITYPRGaLSPEHKTRIARALTEIVLDVevdaaTDAGRMVTVVHFNEAAPDDWAVGGEirsTAAE
+>SRR6185436_16110281   46      0.235   2.223E-03       0       58      59      68      135     197
+PLVRITYPRGaLSPDHKRRIARELTEIVLDVevdaaTDAGRMVTVIHFNEAAADDWAVGGEirsTAAE
+>SRR5258706_5983935    45      0.250   4.216E-03       0       58      59      65      132     177
+PRYRVipTVPEGQySNESRKALVKDVTEAVVRADGGKYEDvaprVWVFPTEIPDGQWGSRGviRPLPE
+>SRR5258708_19012803   45      0.264   4.216E-03       0       58      59      253     320     363
+PRYRIipTVPEGQySNESRKALVKDVTEAVVRADGGKYEDvaprVWVFPTEIPDGQWGSRGviRPLPE
+>SRR5207247_4366399    39      0.231   5.146E-01       0       58      59      36      104     105
+PVIEMFVPEGLaDAEAKRALHDRVSRQVLEVEGAtydesPLAQsiTWMLIQEVLECGWSVGSKAvwASE
+>SRR5215212_2981939    39      0.308   5.146E-01       0       58      59      23      90      161
+PIIEMHVQEGvLDEETKRTLHERVGRQVLEIEGAnyDENDVarlltFMFIREHPEGGFSIGGEMItSE
+>SRR3954452_24621378   38      0.197   7.091E-01       0       55      59      12      82      121
+PLyrVDVTVPEGsmihgQGPwalSRRRAIVREVTEIVLEAEGSDPSlgeawRVWVVLREVGDAFWGAAGEL---
+>SRR5438045_3761950    38      0.271   1.347E+00       0       54      59      17      86      122
+PLyrVQITVPEGsmlhgQGPwaiERRRELVRAVSKAVLDAEGTeynPASawRVWVLMSEISETHWGAAGE----
+>SRR5258707_1096459    37      0.222   2.559E+00       0       57      59      54      125     137
+PLVEMSFPVGvLTLDQKAAMIKSVTDVVRGAMKLPPDparKLFVEIFETPGGGFGVtakvvvvpGGkyRPAP-
+>SRR5438270_3928578    36      0.141   3.528E+00       0       54      59      15      99      112
+PLVEIDLLEAWAPDQIDAIADAIHEAMVETLGVPEraagrdsatkqhfysrfaallaeratvqsADLTAVLVENSRDDWSFGmGQ----