JAL-3210 Barebones gradle/buildship/eclipse. See README

[jalview.git] / examples / testdata / exonerateoutput.gff

diff --git a/examples/testdata/exonerateoutput.gff b/examples/testdata/exonerateoutput.gff
deleted file mode 100644 (file)
index d3b5f9b..0000000
--- a/examples/testdata/exonerateoutput.gff
+++ /dev/null
@@ -1,20 +0,0 @@
-# (exonerate delimits GFF with [START|END] OF GFF DUMP)
-# --- START OF GFF DUMP ---
-#
-#
-##gff-version 2
-##source-version exonerate:protein2genome:local 2.2.0
-##date 2015-01-16
-##type DNA
-#
-#
-# seqname source feature start end score strand frame attributes
-#
-contig_1146    exonerate:protein2genome:local  gene    8534    11269   3652    -       .       gene_id 0 ; sequence DDB_G0269124 ; gene_orientation .
-contig_1146    exonerate:protein2genome:local  cds     8534    11269   .       -       .       
-contig_1146    exonerate:protein2genome:local  exon    8534    11269   .       -       .       insertions 3 ; deletions 6
-#TODO need to understand why GFF features is from 11269 but Align is from 11270
-contig_1146    exonerate:protein2genome:local  similarity      8534    11269   3652    -       .       alignment_id 0 ; Query DDB_G0269124 ; Align 11270 143 120 ; Align 11150 187 282 ; Align 10865 281 888 ; Align 9977 578 1068 ; Align 8909 935 375
-# and a made-up alignment to a sequence in exonerateseqs.fa
-contig_1146    exonerate:protein2genome:local  similarity      8534    11269   3652    -       .       alignment_id 0 ; Query DDB_G0280897 ; Align 11270 143 120 
-# --- END OF GFF DUMP ---