+<html>
+<!--
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
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+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ -->
+<head>
+<title>Flower Colour Scheme</title>
+<style type="text/css">
+<!--
+td {
+ text-align: center;
+}
+-->
+</style>
+</head>
+
+<body>
+ <p>
+ <strong><a name="gecos-flower">Flower</a></strong>
+ </p>
+ <p>
+ This colour scheme was generated by the gecos software. See<br/>
+ Kunzmann, P., Mayer, B.E. & Hamacher, K. Substitution matrix based color schemes for sequence alignment visualization. <em>BMC Bioinformatics</em> <strong>21</strong>, 209 (2020). https://doi.org/10.1186/s12859-020-3526-6<br/>
+ and https://gecos.biotite-python.org/ .<br/>
+ Gecos sets perceptual differences in the colour scheme according to differences in the substitution matrix.
+ </p>
+ <p>
+ flower is a light color scheme, based on BLOSUM62.
+ </p>
+ <div align="center">
+ <table width="400" border="1">
+
+<tr>
+ <td bgcolor="#b18a51">A</td>
+ <td bgcolor="#ff5701">C</td>
+ <td bgcolor="#01a578">D</td>
+ <td bgcolor="#2da0a1">E</td>
+</tr>
+<tr>
+ <td bgcolor="#fa559d">F</td>
+ <td bgcolor="#b1c23c">G</td>
+ <td bgcolor="#0194f9">H</td>
+ <td bgcolor="#f27663">I</td>
+</tr>
+<tr>
+ <td bgcolor="#7fc3d7">K</td>
+ <td bgcolor="#df6e75">L</td>
+ <td bgcolor="#fe9daf">M</td>
+ <td bgcolor="#0bcec6">N</td>
+</tr>
+<tr>
+ <td bgcolor="#4fa32a">P</td>
+ <td bgcolor="#7295ae">Q</td>
+ <td bgcolor="#83bff1">R</td>
+ <td bgcolor="#b4bd9b">S</td>
+</tr>
+<tr>
+ <td bgcolor="#d2b576">T</td>
+ <td bgcolor="#fd997b">V</td>
+ <td bgcolor="#ff2ded">W</td>
+ <td bgcolor="#c96ecf">Y</td>
+</tr>
+
+ </table>
+ </div>
+</body>
+</html>
git://source.jalview.org / jalview.git / blobdiff