<!-- JAL-2864 -->Memory test suite to detect leaks in common
operations</li>
<li>
- <!-- JAL-3140 -->IntervalStoreJ (NCList
- implementation that alows updates) used for Sequence Feature collections</li>
+ <!-- JAL-3140 JAL-2446 -->IntervalStoreJ (NCList
+ implementation that alows updates) used for Sequence Feature collections</li>
+ <li><!-- JAL-2360,JAL-2416 -->More unit test coverage, and minor issues resolved.</li>
</ul>
</td>
<td align="left" valign="top">
<!-- JAL-3143 -->Timeouts when retrieving data from Ensembl</li>
<li>
<!-- JAL-3244 -->'View [Structure] Mappings' and structure superposition in Jmol fail on Windows</li>
- <li>
+ <li>
+ <!-- JAL-3286 -->Blank error dialog is displayed when discovering
+ structures for sequences with lots of PDB structures
+ </li>
+ <li>
<!-- JAL-3239 -->Text misaligned in EPS or SVG image export with monospaced font</li>
<li>
<!-- JAL-3171 -->Warning of 'Duplicate entry' when saving
sequence data at beginning or end of alignment added/removed
via 'Edit' sequence</li>
<li>
- <!-- JAL-2541 -->Delete/Cut selection doesn't relocate
+ <!-- JAL-2541,JAL-2684 (tests) -->Delete/Cut selection doesn't relocate
sequence features correctly when start of sequence is
removed (Known defect since 2.10)</li>
- </ul><em>New Known Defects</em>
+ <li>
+ <!-- JAL-2830 -->Inserting gap sequence via the Edit Sequence
+ dialog corrupts dataset sequence
+ </li>
+ </ul><em>New Known Defects</em>
<ul>
<li>
<!-- JAL-2647 -->Input Data menu entry is greyed out when PCA View is restored from a Jalview 2.11 project</li>
window after dragging left to select columns to left of visible
region
</li>
+ <li>
+ <!-- JAL-2876 -->Features coloured according to their description
+ string and thresholded by score in earlier versions of Jalview are
+ not shown as thresholded features in 2.11. To workaround please
+ create a Score filter instead.
+ </li>
</ul>
</td>
</tr>
<!-- JAL-2589 -->User defined gap colour not shown in
overview when features overlaid on alignment
</li>
- </ul>
+ <li>
+ <!-- JAL-2567 -->Feature settings for different views not
+ recovered correctly from Jalview project file
+ </li>
+ <li>
+ <!-- JAL-2256 -->Feature colours in overview when first opened
+ (automatically via preferences) are different to the main
+ alignment panel
+ </li>
+ </ul>
<em>Data import/export</em>
<ul>
<li>