JAL-3574 JAL-3407 release notes

[jalview.git] / help / help / html / releases.html

diff --git a/help/help/html/releases.html b/help/help/html/releases.html
index 06ff979..9442641 100755 (executable)
--- a/help/help/html/releases.html
+++ b/help/help/html/releases.html
@@ -58,13 +58,13 @@ li:before {
     <tr>
       <td width="60" align="center" nowrap><strong><a
           id="Jalview.2.11.1">2.11.1</a><a id="Jalview.2.11.1.0">.0</a><br />
-          <em>2/04/2020</em></strong></td>
+          <em>22/04/2020</em></strong></td>
       <td align="left" valign="top">
         <ul>
           <li>
-            <!-- JAL-3187,JAL-3305,JAL-3304,JAL-3302 -->Map 'virtual'
+            <!-- JAL-3187,JAL-3305,JAL-3304,JAL-3302,JAL-3567 -->Map 'virtual'
             codon features shown on protein (or vice versa) for display
-            in alignments, on structure views and for export.
+            in alignments, on structure views, in feature reports and for export.
           </li>
           <li>
             <!-- JAL-3121 -->Feature attributes from VCF files can be
@@ -98,6 +98,9 @@ li:before {
             <!-- JAL-3549 -->Warn if Sort by Score or Density attempted
             with no feature types visible
           </li>
+          <li>
+          <!-- JAL-3574 -->Improved support for filtering feature attributes with large integer values
+          </li>
         </ul><em>Jalview Installer</em>
            <ul>
           <li>
@@ -119,6 +122,9 @@ li:before {
           <li>
             <!-- JAL-3508 -->New point release version scheme - 2.11.1.0
           </li>
+          <li>
+            <!-- JAL-3577 -->'Jalview Test' installers/apps for easier access to test-release channel builds            
+          </li> 
         </ul> <em>Build System</em>
         <ul>
           <li>
@@ -136,11 +142,24 @@ li:before {
             to stdout containing the consensus sequence for each
             alignment in a Jalview session
           </li>
+          <li>
+            <!-- JAL-3578 -->ComputePeptideVariants.groovy to translate
+            genomic sequence_variant annotation from CDS as
+            missense_variant or synonymous_variant on protein products.
+          </li>
         </ul>
       </td>
       <td align="left" valign="top">
         <ul>
           <li>
+            <!-- JAL-3581 -->Hidden sequence markers still visible when
+            'Show hidden markers' option is not ticked
+          </li>
+          <li>
+            <!-- JAL-3571 -->Feature Editor dialog can be opened when
+            'Show Sequence Features' option is not ticked
+          </li>
+          <li>
             <!-- JAL-3549 -->Undo 'Null' operation shown after sort by
             buttons in Feature Settings dialog are clicked when no
             features are visible
@@ -190,6 +209,11 @@ li:before {
             <!-- JAL-3406 -->Credits missing some authors in Jalview
             help documentation for 2.11.0 release
           </li>
+          <li>
+            <!-- JAL-3529 -->Export of Pfam alignment as Stockholm
+            includes Pfam ID as sequence's accession rather than its
+            Uniprot Accession
+          </li>
         </ul> <em>Java 11 Compatibility issues</em>
         <ul>
           <li>
@@ -232,6 +256,9 @@ li:before {
             <!-- JAL-3562 -->Test Suite: Certain Functional tests fail on jalview's
             bamboo server but run fine locally.
           </li>
+          <li>
+            <!-- JAL-3574 -->Filtering features by genomic location (POS) is broken by rounding
+          </li>
         </ul>
       </td>
     </tr>