JAL-3111 JAL-2962 JAL-2903 JAL-2986 release notes

[jalview.git] / help / help / html / releases.html

diff --git a/help/help/html/releases.html b/help/help/html/releases.html
index 7d9d7c9..b9b1b67 100755 (executable)
--- a/help/help/html/releases.html
+++ b/help/help/html/releases.html
@@ -58,7 +58,7 @@ li:before {
     <tr>
       <td width="60" align="center" nowrap>
           <strong><a name="Jalview.2.11">2.11</a><br />
-            <em>20/06/2019</em></strong>
+            <em>27/06/2019</em></strong>
       </td>
       <td align="left" valign="top">
         <ul>
@@ -124,13 +124,17 @@ li:before {
                                                        </li>
                                                </ul>
                                        </li>
-          <li><strong>Principal Components Analysis Viewer</strong>
+                                       <li>
+                                               <!-- JAL-3205 -->Symmetric score matrices for faster
+                                               tree and PCA calculations
+                                       </li>
+                                       <li><strong>Principal Components Analysis Viewer</strong>
             <ul>
                                                        <li>
                                                                <!-- JAL-1767,JAL-2647 -->Principal Components Analysis results
                                                                and Viewer state saved in Jalview Project
                                                        </li>
-                                                       <li>'Change parameters' option removed from viewer's
+                                                       <li><!-- JAL-2962 -->'Change parameters' option removed from viewer's
                                                                drop-down menus</li>
                                                        <li>
                                                                <!-- JAL-2975 -->Can use shift + arrow keys to rotate PCA image
@@ -162,7 +166,7 @@ li:before {
                                                                view
                                                        </li>
                                                        <li>
-                                                               <!-- JAL-2527 -->Alignment Overview now WYSIWIS (What you see is
+                                                               <!-- JAL-2527 JAL-3203 -->Alignment Overview now WYSIWIS (What you see is
                                                                what is shown)<br />Only visible region of alignment is shown by
                                                                default (can be changed in user preferences)
                                                        </li>
@@ -235,11 +239,13 @@ li:before {
                                                <!-- JAL-3003 -->Added remarks about transparent rendering effects
                                                not supported in EPS figure export
                                        </li>
+                                       <li><!-- JAL-2903 -->Typos in documentation for Preferences dialog</li>
                                </ul> <em>Development and Release Processes</em>
         <ul>
                <li>
                                                <!-- JAL-3196,JAL-3179.JAL-2671 -->Build system migrated from Ant to Gradle
                                        </li>
+                                       <li><!-- JAL-1424 -->Enhanced checks for missing and duplicated keys in Message bundles</li>
                                        <li>
                                                <!-- JAL-3225 -->Eclipse project configuration managed with
                                                gradle-eclipse
@@ -315,6 +321,10 @@ li:before {
                                                export as Jalview features file
                                        </li>
                                        <li>
+                                               <!-- JAL-2816 -->Tooltips displayed for features filtered by
+                                               score from view
+                                       </li>
+                                       <li>
                                                <!-- JAL-2060 -->'Graduated colour' option not offered for
                                                manually created features (where if feature score is Float.NaN)
                                        </li>
@@ -433,9 +443,14 @@ li:before {
                                                <!-- JAL-868 -->Structure colours not updated when associated tree
                                                repartitions the alignment view (Regression in 2.10.5)
                                        </li>
-
                                </ul>
-                               <em>New Known Defects</em>
+                               <em>Datamodel</em>
+                               <ul>
+                                       <li>
+                                               <!-- JAL-2986 -->Sequence.findIndex returns wrong value when
+                                               sequence's End is greater than its length
+                                       </li>
+                               </ul> <em>New Known Defects</em>
                                <ul>
                                        <li>
                                                <!-- JAL-3313 -->Codon consensus logo incorrectly scaled in gapped
@@ -646,6 +661,10 @@ li:before {
                 open URL in the browser can be dropped onto Jalview.</em>
             </li>
           </ul>
+          <em>New Known Defects</em>
+          <ul>
+            <li><!-- JAL-3083 -->Cancel option doesn't reset Colour by Annotation</li>
+          </ul>
         </div></td>
     </tr>
     <tr>
@@ -805,7 +824,11 @@ li:before {
               Sequences' enabled) or Ensembl isoforms (Workaround in
               2.10.4 is to fail back to N&amp;W mapping)
             </li>
-          </ul>
+                                               <li>
+                                                       <!-- JAL-2990 -->Export Annotations from File Menu with CSV
+                                                       option gives blank output
+                                               </li>
+                                       </ul>
         </div>
           </td>
     </tr>