when in wrapped mode
</li>
<li>
- <!-- JAL-3073 -->Can select columns by dragging left/right in
- annotations
+ <!-- JAL-3073 -->Can select columns by dragging left/right in a graph or histogram
+ annotation
</li>
<li>
<!-- JAL-2814 -->Help button on Uniprot and PDB search panels
<!-- JAL-3181 -->Consistent ordering of links in sequence id
popup menu
</li>
+ <li>
+ <!-- JAL-3080 -->Red line indicating tree-cut position not shown if no subgroups are created</li>
+ <li>
+ <!-- JAL-3042 -->Removed ability to configure length of search history by right-clicking search box</li>
+
+
</ul></li>
<li><strong>Java 11 Support</strong>
<ul>
and XML based data retrieval clients</li>
<li><!-- JAL-3311 -->Disable VAMSAS menu in preparation for removal</li>
<li><!-- -->Jalview Desktop no longer distributed via Java Web Start</li>
- </ul>
- <em>Development and Release Processes</em>
+ </ul> <em>Documentation</em>
+ <ul>
+ <li>
+ <!-- JAL-3003 -->Added remarks about transparent rendering effects
+ not supported in EPS figure export
+ </li>
+ </ul> <em>Development and Release Processes</em>
<ul>
<li>
<!-- JAL-3196,JAL-3007 -->Jalview Native Application and
<!-- JAL-2864 -->Memory test suite to detect leaks in common
operations</li>
<li>
- <!-- JAL-3140 -->IntervalStoreJ (NCList
- implementation that alows updates) used for Sequence Feature collections</li>
+ <!-- JAL-3140 JAL-2446 -->IntervalStoreJ (NCList
+ implementation that alows updates) used for Sequence Feature collections</li>
+ <li><!-- JAL-2360,JAL-2416 -->More unit test coverage, and minor issues resolved.</li>
</ul>
</td>
<td align="left" valign="top">
<!-- JAL-3143 -->Timeouts when retrieving data from Ensembl</li>
<li>
<!-- JAL-3244 -->'View [Structure] Mappings' and structure superposition in Jmol fail on Windows</li>
- <li>
+ <li>
+ <!-- JAL-3286 -->Blank error dialog is displayed when discovering
+ structures for sequences with lots of PDB structures
+ </li>
+ <li>
<!-- JAL-3239 -->Text misaligned in EPS or SVG image export with monospaced font</li>
<li>
<!-- JAL-3171 -->Warning of 'Duplicate entry' when saving
<li>
<!-- JAL-3178 -->Nonpositional features lose feature group
on export as Jalview features file</li>
- <li>
+ <li>
+ <!-- JAL-2060 -->'Graduated colour' option not offered for
+ manually created features (where if feature score is Float.NaN)
+ </li>
+ <li>
<!-- JAL-3097,JAL-3099 -->Blank extra columns drawn or
printed when columns are hidden</li>
<li>
sequence data at beginning or end of alignment added/removed
via 'Edit' sequence</li>
<li>
- <!-- JAL-2541 -->Delete/Cut selection doesn't relocate
+ <!-- JAL-2541,JAL-2684 (tests) -->Delete/Cut selection doesn't relocate
sequence features correctly when start of sequence is
removed (Known defect since 2.10)</li>
- </ul>
- <em>New Known Defects</em>
+ </ul><em>New Known Defects</em>
<ul>
<li>
<!-- JAL-2647 -->Input Data menu entry is greyed out when PCA View is restored from a Jalview 2.11 project</li>
<li>
- <!-- JAL-3213 -->Alignment panel height can be too small after 'New View'</li>
- <li>
- <!-- JAL-3240 -->Display is incorrect after removing gapped columns within hidden columns</li>
- </ul>
+ <!-- JAL-3213 -->Alignment panel height can be too small after 'New View'</li>
+ <li>
+ <!-- JAL-3240 -->Display is incorrect after removing gapped
+ columns within hidden columns
+ </li>
+ <li>
+ <!-- JAL-3314 -->Rightmost selection is lost when mouse re-enters
+ window after dragging left to select columns to left of visible
+ region
+ </li>
+ </ul>
</td>
</tr>
<tr>
<!-- JAL-2593 -->Improved performance when rendering lots
of features (particularly when transparency is disabled)
</li>
- </ul>
+ <li>
+ <!-- JAL-2296,JAL-2295 -->Experimental features in 2.10.2 for
+ exchange of Jalview features and Chimera attributes made
+ generally available
+ </li>
+ </ul>
</div>
</td>
<td><div align="left">