JAL-3407 add and document ComputePeptideVariants.groovy

[jalview.git] / help / help / html / whatsNew.html

diff --git a/help/help/html/whatsNew.html b/help/help/html/whatsNew.html
index 00f9466..0f0c7f1 100755 (executable)
--- a/help/help/html/whatsNew.html
+++ b/help/help/html/whatsNew.html
@@ -43,7 +43,13 @@
       <a href="features/splitView.html#virtualfeats">Sequence
         Features dialog</a>. This allows more analyses of nucleotide and
       peptide sequence features on alignments in a more flexible and
-      memory efficient way than in earlier versions.</li>
+      memory efficient way than in earlier versions.<br />
+    <em>Note: Virtual features work best when variants are
+        annotated with CSQ fields. Please <a
+        href="features/importvcf.html#computepepvariants">see this
+          Groovy script workaround</a> if you are working with VCF files
+        without CSQ fields.
+    </em></li>
     <li><strong>Improved VCF data import</strong><br /> <a
       href="features/importvcf.html#attribs">Standard attributes for
         filtering variants</a> (e.g. position, QUAL field etc) are now