Merge branch 'develop' into features/JAL-2094_colourInterface

[jalview.git] / help / helpTOC.xml

diff --git a/help/helpTOC.xml b/help/helpTOC.xml
index fe8e1a9..c4476fd 100755 (executable)
--- a/help/helpTOC.xml
+++ b/help/helpTOC.xml
@@ -23,11 +23,9 @@
 <!-- DO NOT WRAP THESE LINES - help2Website relies on each item being on one line! -->
        <tocitem text="Jalview Documentation" target="home" expand="true">
                        <tocitem text="What's new" target="new" expand="true">
-                               <tocitem text="Split Frame View" target="splitframe" />
-                               <tocitem text="PDB Sequence Fetcher" target="pdbfetcher" />
-                               <tocitem text="PDB Structure Chooser" target="pdbchooser" />
-                               <tocitem text="Chimera Viewer" target="chimera" />
-                               <tocitem text="Select Columns by Annotation" target="selectcolbyannot" />
+                               <tocitem text="Retrieval from ENSEMBL" target="ensemblfetch" />
+                               <tocitem text="UniProt Free Text Search" target="uniprotfetcher" />
+                               
                                <tocitem text="Latest Release Notes" target="release"/>
                </tocitem>
                
@@ -107,7 +105,7 @@
                        <tocitem text="By RNA Helices" target="colours.rnahelices" />
                </tocitem>
                
-               <tocitem text="Calculations" target="calculations" expand="false">
+               <tocitem text="Calculations" expand="false">
                        <tocitem text="Sorting alignments" target="sorting" />
                        <tocitem text="Calculating trees" target="trees" />
                        <tocitem text="Principal Component Analysis" target="pca" />
@@ -133,8 +131,7 @@
                        <tocitem text="PDB Sequence Fetcher" target="pdbfetcher" />
                        <tocitem text="PDB Structure Chooser" target="pdbchooser" />
                        <tocitem text="Jmol Viewer" target="pdbjmol" />
-                       <tocitem text="Chimera Viewer" target="chimera" />
-                       <tocitem text="Simple PDB Viewer" target="pdbmcviewer" />
+                       <tocitem text="Chimera Viewer" target="chimera" />                      
                </tocitem>
                <tocitem text="Viewing RNA structures" target="varna" expand="false"/>
                <tocitem text="VAMSAS Data Exchange" target="vamsas">